Ubc (ubiquitin C) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ubc (ubiquitin C) Rattus norvegicus
Analyze
Symbol: Ubc
Name: ubiquitin C
RGD ID: 621244
Description: Predicted to enable protein tag activity and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be located in mitochondrial outer membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBC (ubiquitin C); PARTICIPATES IN eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: polyubiquitin-C; ubiquitin
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81236,899,673 - 36,905,275 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1236,900,127 - 36,905,275 (+)EnsemblGRCr8
mRatBN7.21231,239,149 - 31,243,924 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,239,152 - 31,243,925 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1232,412,823 - 32,415,121 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,024,248 - 33,026,546 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,076,179 - 32,078,249 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01236,638,457 - 36,642,734 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1236,638,457 - 36,642,734 (+)Ensemblrn6Rnor6.0
Rnor_5.01238,515,117 - 38,520,066 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41232,333,211 - 32,337,944 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1232,933,657 - 32,936,338 (+)NCBICelera
RGSC_v3.11232,196,598 - 32,201,332 (+)NCBI
Cytogenetic Map12q15NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-lariciresinol  (ISO)
(-)-lariciresinol  (ISO)
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2-bromohexadecanoic acid  (ISO)
2-butoxyethanol  (ISO)
2-methylcholine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-(hydroxymethyl)cytosine  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (EXP)
alpha-hexachlorocyclohexane  (EXP)
aminoglutethimide  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
Azaspiracid  (ISO)
azoxystrobin  (EXP)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
budesonide  (ISO)
butane-2,3-dione  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chloropicrin  (ISO)
chloroquine  (EXP)
chlorpyrifos  (EXP,ISO)
chromium(3+) trichloride  (EXP)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
crotonaldehyde  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
Cyclopamine  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
diethylstilbestrol  (ISO)
dinophysistoxin 1  (ISO)
doxorubicin  (ISO)
enzalutamide  (ISO)
flavonoids  (EXP)
fluoranthene  (ISO)
flusilazole  (ISO)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
glycidyl methacrylate  (ISO)
glyphosate  (EXP)
graphene oxide  (ISO)
haloperidol  (ISO)
hexaconazole  (ISO)
hydrogen cyanide  (ISO)
hydrogen peroxide  (EXP)
imidacloprid  (EXP)
imidazopyrazole  (ISO)
iron dichloride  (ISO)
isoprenaline  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
maneb  (ISO)
menadione  (ISO)
methamphetamine  (EXP)
methylisothiazolinone  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (ISO)
nickel subsulfide  (ISO)
nicotine  (ISO)
nitric oxide  (ISO)
okadaic acid  (ISO)
oxidopamine  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phlorizin  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picolinic acid  (EXP)
potassium cyanide  (ISO)
pyrogallol  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sulfasalazine  (ISO)
tamoxifen  (ISO)
testosterone  (EXP)
tetrachloro-1,4-benzoquinone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thiabendazole  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (EXP)
triadimefon  (ISO)
triamcinolone acetonide  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Nucleotide sequence and expression of the rat polyubiquitin mRNA. Hayashi T, etal., Biochim Biophys Acta 1994 Jun 21;1218(2):232-4.
3. Ubiquitin (UbC) expression in muscle cells is increased by glucocorticoids through a mechanism involving Sp1 and MEK1. Marinovic AC, etal., J Biol Chem 2002 May 10;277(19):16673-81.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9074707   PMID:9139693   PMID:9447980   PMID:10191279   PMID:10751411   PMID:10938131   PMID:11137137   PMID:11901229   PMID:12167719   PMID:12477932   PMID:12626652   PMID:12675925  
PMID:12847084   PMID:12967636   PMID:14507671   PMID:14526223   PMID:14531861   PMID:14638691   PMID:14642282   PMID:14657369   PMID:14970263   PMID:15048125   PMID:15359219   PMID:15371442  
PMID:15389569   PMID:15456867   PMID:15605377   PMID:15659545   PMID:15767585   PMID:16112871   PMID:16301819   PMID:16330492   PMID:16368719   PMID:16428329   PMID:16502470   PMID:16525057  
PMID:16782881   PMID:16849335   PMID:17060322   PMID:17062563   PMID:17110338   PMID:17141156   PMID:17210752   PMID:17322297   PMID:17634366   PMID:17726030   PMID:18078967   PMID:18174161  
PMID:18419753   PMID:18724031   PMID:18779656   PMID:18784257   PMID:19103650   PMID:19182904   PMID:19190083   PMID:19198660   PMID:19223597   PMID:19347873   PMID:19533683   PMID:19536136  
PMID:19541932   PMID:19586612   PMID:19801490   PMID:19950214   PMID:19996297   PMID:20029031   PMID:20100827   PMID:20346417   PMID:20405034   PMID:20623542   PMID:20665669   PMID:20724525  
PMID:20819951   PMID:20861072   PMID:20863832   PMID:21071436   PMID:21073519   PMID:21185309   PMID:21454665   PMID:21478148   PMID:21572988   PMID:21630459   PMID:21808025   PMID:21980954  
PMID:22046440   PMID:22082260   PMID:22206666   PMID:22279542   PMID:22357842   PMID:22405206   PMID:22531154   PMID:22681889   PMID:22705851   PMID:22871113   PMID:22964853   PMID:23106098  
PMID:23146885   PMID:23166351   PMID:23171401   PMID:23258539   PMID:23376485   PMID:23533145   PMID:23850969   PMID:23906983   PMID:24011916   PMID:24018537   PMID:24030972   PMID:24093724  
PMID:24114844   PMID:24186360   PMID:24236122   PMID:24334056   PMID:24478626   PMID:24722446   PMID:25002582   PMID:28259758  


Genomics

Comparative Map Data
Ubc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81236,899,673 - 36,905,275 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1236,900,127 - 36,905,275 (+)EnsemblGRCr8
mRatBN7.21231,239,149 - 31,243,924 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,239,152 - 31,243,925 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1232,412,823 - 32,415,121 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,024,248 - 33,026,546 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,076,179 - 32,078,249 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01236,638,457 - 36,642,734 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1236,638,457 - 36,642,734 (+)Ensemblrn6Rnor6.0
Rnor_5.01238,515,117 - 38,520,066 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41232,333,211 - 32,337,944 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1232,933,657 - 32,936,338 (+)NCBICelera
RGSC_v3.11232,196,598 - 32,201,332 (+)NCBI
Cytogenetic Map12q15NCBI
UBC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812124,911,646 - 124,914,650 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12124,911,604 - 124,917,368 (-)Ensemblhg38GRCh38
GRCh3712125,396,192 - 125,399,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612123,962,145 - 123,965,530 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3412123,921,073 - 123,924,077NCBI
Celera12124,997,873 - 125,000,802 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12122,358,235 - 122,361,174 (-)NCBIHuRef
CHM1_112125,217,624 - 125,221,019 (-)NCBICHM1_1
T2T-CHM13v2.012124,916,854 - 124,919,858 (-)NCBIT2T-CHM13v2.0
Ubc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395125,463,029 - 125,467,081 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5125,463,029 - 125,467,266 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385125,385,965 - 125,390,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5125,385,965 - 125,390,202 (-)Ensemblmm10GRCm38
MGSCv375125,866,335 - 125,870,387 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365125,675,482 - 125,679,691 (-)NCBIMGSCv36mm8
Celera5122,405,521 - 122,411,999 (-)NCBICelera
Cytogenetic Map5G1.1NCBI
cM Map564.18NCBI
UBC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210132,995,718 - 132,999,939 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112132,992,096 - 132,998,965 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012122,502,868 - 122,507,101 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112126,789,228 - 126,793,343 (-)NCBIPanPan1.1PanPan1.1panPan2
UBC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,006,375 - 5,008,570 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,165,853 - 5,168,506 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0265,251,876 - 5,254,989 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl265,251,324 - 5,254,984 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1265,186,495 - 5,189,830 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0265,278,119 - 5,281,494 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0265,230,046 - 5,233,383 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ubc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118159,015,205 - 159,018,452 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936558461,033 - 464,222 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1428,257,027 - 28,263,044 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11428,253,857 - 28,260,771 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21429,958,861 - 29,961,533 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap14q12-q15NCBI
UBC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111120,277,855 - 120,279,553 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037125,003,711 - 125,007,003 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubc
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11628,520,660 - 28,525,518 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ubc
35 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:91
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000045162
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122977552242298555Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)123424347543352593Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)122963663737764351Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat

Markers in Region
AI194771  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01238,519,850 - 38,519,985NCBIRnor5.0
RGSC_v3.41232,337,734 - 32,337,868UniSTSRGSC3.4
Celera1232,936,128 - 32,936,262UniSTS
Cytogenetic Map12q14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D17296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X92660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X92661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000085692   ⟹   ENSRNOP00000074688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1236,900,813 - 36,905,270 (+)Ensembl
mRatBN7.2 Ensembl1231,239,153 - 31,243,925 (+)Ensembl
Rnor_6.0 Ensembl1236,638,457 - 36,642,734 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102498   ⟹   ENSRNOP00000078230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1236,900,277 - 36,905,275 (+)Ensembl
mRatBN7.2 Ensembl1231,239,152 - 31,243,924 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102889   ⟹   ENSRNOP00000080954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1236,900,340 - 36,905,275 (+)Ensembl
mRatBN7.2 Ensembl1231,241,974 - 31,243,924 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000166204   ⟹   ENSRNOP00000107356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1236,900,127 - 36,905,275 (+)Ensembl
RefSeq Acc Id: NM_001399781   ⟹   NP_001386710
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,900,500 - 36,905,275 (+)NCBI
mRatBN7.21231,239,149 - 31,243,924 (+)NCBI
RefSeq Acc Id: NM_001399782   ⟹   NP_001386711
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,900,500 - 36,905,275 (+)NCBI
mRatBN7.21231,239,149 - 31,243,924 (+)NCBI
RefSeq Acc Id: NM_001399783   ⟹   NP_001386712
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,900,500 - 36,905,275 (+)NCBI
mRatBN7.21231,239,149 - 31,243,924 (+)NCBI
RefSeq Acc Id: NM_001399785   ⟹   NP_001386714
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,900,500 - 36,905,275 (+)NCBI
mRatBN7.21231,239,149 - 31,243,924 (+)NCBI
RefSeq Acc Id: NM_001399786   ⟹   NP_001386715
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,900,500 - 36,905,275 (+)NCBI
mRatBN7.21231,239,149 - 31,243,924 (+)NCBI
RefSeq Acc Id: NM_001399787   ⟹   NP_001386716
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,900,500 - 36,905,275 (+)NCBI
mRatBN7.21231,239,149 - 31,243,924 (+)NCBI
RefSeq Acc Id: NM_001399788   ⟹   NP_001386717
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,900,500 - 36,905,275 (+)NCBI
mRatBN7.21231,239,149 - 31,243,924 (+)NCBI
RefSeq Acc Id: NM_017314   ⟹   NP_059010
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,900,505 - 36,905,275 (+)NCBI
mRatBN7.21231,239,154 - 31,243,924 (+)NCBI
Rnor_6.01236,638,457 - 36,642,734 (+)NCBI
Rnor_5.01238,515,117 - 38,520,066 (+)NCBI
RGSC_v3.41232,333,211 - 32,337,944 (+)RGD
Celera1232,933,657 - 32,936,338 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089712   ⟹   XP_038945640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,899,673 - 36,905,275 (+)NCBI
mRatBN7.21231,239,497 - 31,243,924 (+)NCBI
RefSeq Acc Id: XM_063271601   ⟹   XP_063127671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81236,899,673 - 36,905,275 (+)NCBI
RefSeq Acc Id: NP_059010   ⟸   NM_017314
- Peptide Label: isoform 3 precursor
- UniProtKB: Q63429 (UniProtKB/Swiss-Prot),   Q3ZBA1 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074688   ⟸   ENSRNOT00000085692
RefSeq Acc Id: XP_038945640   ⟸   XM_039089712
- Peptide Label: isoform X1
- UniProtKB: Q63429 (UniProtKB/Swiss-Prot),   Q3ZBA1 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000078230   ⟸   ENSRNOT00000102498
Ensembl Acc Id: ENSRNOP00000080954   ⟸   ENSRNOT00000102889
RefSeq Acc Id: NP_001386710   ⟸   NM_001399781
- Peptide Label: isoform 1
- UniProtKB: Q63429 (UniProtKB/Swiss-Prot),   Q3ZBA1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001386711   ⟸   NM_001399782
- Peptide Label: isoform 2
- UniProtKB: Q63429 (UniProtKB/Swiss-Prot),   Q3ZBA1 (UniProtKB/Swiss-Prot),   F1LML2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386714   ⟸   NM_001399785
- Peptide Label: isoform 5
- UniProtKB: Q63429 (UniProtKB/Swiss-Prot),   Q3ZBA1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001386716   ⟸   NM_001399787
- Peptide Label: isoform 6
- UniProtKB: Q5FWT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386715   ⟸   NM_001399786
- Peptide Label: isoform 6
- UniProtKB: Q5FWT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386717   ⟸   NM_001399788
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001386712   ⟸   NM_001399783
- Peptide Label: isoform 2
- UniProtKB: Q63429 (UniProtKB/Swiss-Prot),   Q3ZBA1 (UniProtKB/Swiss-Prot),   F1LML2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127671   ⟸   XM_063271601
- Peptide Label: isoform X1
- UniProtKB: Q63429 (UniProtKB/Swiss-Prot),   Q3ZBA1 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000107356   ⟸   ENSRNOT00000166204
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63429-F1-model_v2 AlphaFold Q63429 1-810 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698603
Promoter ID:EPDNEW_R9126
Type:single initiation site
Name:Ubc_1
Description:ubiquitin C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01236,638,425 - 36,638,485EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621244 AgrOrtholog
BioCyc Gene G2FUF-19381 BioCyc
Ensembl Genes ENSRNOG00000057823 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000085692 ENTREZGENE
  ENSRNOT00000166204 ENTREZGENE
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7312282 IMAGE-MGC_LOAD
  IMAGE:7929586 IMAGE-MGC_LOAD
InterPro Ubiquitin UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Ubiquitin_CS UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
  Ubiquitin_ubiquitin-like UniProtKB/Swiss-Prot
KEGG Report rno:50522 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105452 IMAGE-MGC_LOAD
  MGC:124622 IMAGE-MGC_LOAD
NCBI Gene 50522 ENTREZGENE
PANTHER UBIQUITIN UniProtKB/Swiss-Prot
Pfam ubiquitin UniProtKB/Swiss-Prot
PhenoGen Ubc PhenoGen
PRINTS UBIQUITIN UniProtKB/Swiss-Prot
PROSITE UBIQUITIN_1 UniProtKB/Swiss-Prot
  UBIQUITIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000057823 RatGTEx
SMART UBQ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot
UniProt A0A8I5ZKH3_RAT UniProtKB/TrEMBL
  A0A8I5ZR71_RAT UniProtKB/TrEMBL
  A0ABK0LNL6_RAT UniProtKB/TrEMBL
  F1LML2 ENTREZGENE, UniProtKB/TrEMBL
  Q3ZBA1 ENTREZGENE
  Q5FWT0 ENTREZGENE, UniProtKB/TrEMBL
  Q63429 ENTREZGENE
  Q63653_RAT UniProtKB/TrEMBL
  Q63654_RAT UniProtKB/TrEMBL
  UBC_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q3ZBA1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Ubc  ubiquitin C      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Ubc  ubiquitin C      Symbol and Name status set to provisional 70820 PROVISIONAL