Ablim1 (actin-binding LIM protein 1) - Rat Genome Database

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Gene: Ablim1 (actin-binding LIM protein 1) Rattus norvegicus
Analyze
Symbol: Ablim1 (Ensembl: AABR07007032.1)
Name: actin-binding LIM protein 1
RGD ID: 1565768
Description: Predicted to enable actin binding activity. Predicted to be involved in cytoskeleton organization. Predicted to act upstream of or within plasma membrane bounded cell projection organization and positive regulation of transcription by RNA polymerase II. Predicted to be located in lamellipodium and stress fiber. Predicted to be active in postsynaptic density. Orthologous to human ABLIM1 (actin binding LIM protein 1); INTERACTS WITH 4,4'-diaminodiphenylmethane; amphetamine; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102550100; LOC307989; MGC125264; RGD1565768; similar to actin-binding LIM protein 1 long isoform; uncharacterized LOC102550100
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81266,088,868 - 266,377,169 (-)NCBIGRCr8
mRatBN7.21256,083,747 - 256,372,075 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1256,084,297 - 256,371,969 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1264,293,977 - 264,485,616 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01271,000,027 - 271,191,663 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01263,645,117 - 263,836,899 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01277,853,877 - 278,043,096 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01285,233,699 - 285,420,807 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41263,380,818 - 263,465,905 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1251,779,866 - 252,069,514 (-)NCBICelera
Cytogenetic Map1q55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
8-Br-cAMP  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
Benoxacor  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
butan-1-ol  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
FR900359  (ISO)
hydrogen peroxide  (ISO)
lead(0)  (ISO)
methamphetamine  (EXP,ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
mifepristone  (ISO)
mitomycin C  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenytoin  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP)
vincaleukoblastine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Protein trafficking and anchoring complexes revealed by proteomic analysis of inward rectifier potassium channel (Kir2.x)-associated proteins. Leonoudakis D, etal., J Biol Chem. 2004 May 21;279(21):22331-46. Epub 2004 Mar 15.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:9245787   PMID:11163266   PMID:12477932   PMID:17114649   PMID:17194709   PMID:22684256  


Genomics

Comparative Map Data
Ablim1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81266,088,868 - 266,377,169 (-)NCBIGRCr8
mRatBN7.21256,083,747 - 256,372,075 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1256,084,297 - 256,371,969 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1264,293,977 - 264,485,616 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01271,000,027 - 271,191,663 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01263,645,117 - 263,836,899 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01277,853,877 - 278,043,096 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01285,233,699 - 285,420,807 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41263,380,818 - 263,465,905 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1251,779,866 - 252,069,514 (-)NCBICelera
Cytogenetic Map1q55NCBI
ABLIM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810114,431,110 - 114,801,373 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10114,431,112 - 114,768,061 (-)EnsemblGRCh38hg38GRCh38
GRCh3710116,190,869 - 116,528,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610116,180,859 - 116,434,404 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410116,180,859 - 116,276,675NCBI
Celera10109,920,119 - 110,173,614 (-)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10109,817,609 - 110,070,887 (-)NCBIHuRef
CHM1_110116,474,653 - 116,728,179 (-)NCBICHM1_1
T2T-CHM13v2.010115,325,183 - 115,686,686 (-)NCBIT2T-CHM13v2.0
Ablim1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391957,021,165 - 57,303,776 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1957,021,165 - 57,303,351 (-)EnsemblGRCm39 Ensembl
GRCm381957,032,733 - 57,315,344 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1957,032,733 - 57,314,919 (-)EnsemblGRCm38mm10GRCm38
MGSCv371957,107,754 - 57,290,522 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361957,090,390 - 57,269,282 (-)NCBIMGSCv36mm8
Celera1959,226,385 - 59,408,337 (-)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1952.09NCBI
Ablim1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543119,402,023 - 19,683,589 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543119,397,136 - 19,684,574 (-)NCBIChiLan1.0ChiLan1.0
ABLIM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28126,315,945 - 126,645,544 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110126,321,282 - 126,650,889 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010111,030,953 - 111,360,527 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110114,460,703 - 114,712,858 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10114,465,838 - 114,712,561 (-)Ensemblpanpan1.1panPan2
ABLIM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12825,260,323 - 25,543,369 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2825,260,873 - 25,545,304 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2825,412,116 - 25,695,587 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02825,794,442 - 26,078,835 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2825,793,574 - 26,078,829 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12825,349,757 - 25,633,749 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02825,364,845 - 25,649,366 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02825,558,277 - 25,842,977 (-)NCBIUU_Cfam_GSD_1.0
Ablim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721320,654,882 - 20,840,766 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364864,722,279 - 4,925,551 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364864,720,643 - 4,906,460 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABLIM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14124,760,404 - 125,010,892 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114124,759,811 - 125,108,722 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214135,882,251 - 136,231,438 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABLIM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19107,298,018 - 107,638,915 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9107,302,821 - 107,524,945 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604868,532,262 - 68,873,635 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ablim1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473731,943,110 - 32,164,451 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473731,856,202 - 32,169,116 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ablim1
2989 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:236
Count of miRNA genes:164
Interacting mature miRNAs:178
Transcripts:ENSRNOT00000018693, ENSRNOT00000067257
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1245907761257976495Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat

Markers in Region
BF386652  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,170,210 - 256,170,376 (+)MAPPERmRatBN7.2
Rnor_6.01277,936,908 - 277,937,073NCBIRnor6.0
Rnor_5.01285,316,207 - 285,316,372UniSTSRnor5.0
RGSC_v3.41263,463,774 - 263,463,939UniSTSRGSC3.4
Celera1251,864,429 - 251,864,594UniSTS
RH 3.4 Map11682.3UniSTS
Cytogenetic Map1q55UniSTS
RH128661  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,084,552 - 256,084,741 (+)MAPPERmRatBN7.2
Rnor_6.01277,854,137 - 277,854,325NCBIRnor6.0
Rnor_5.01285,233,955 - 285,234,143UniSTSRnor5.0
Celera1251,780,126 - 251,780,314UniSTS
RH 3.4 Map11682.4UniSTS
Cytogenetic Map1q55UniSTS
RH129917  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,085,891 - 256,086,105 (+)MAPPERmRatBN7.2
Rnor_6.01277,855,476 - 277,855,689NCBIRnor6.0
Rnor_5.01285,235,294 - 285,235,507UniSTSRnor5.0
Celera1251,781,465 - 251,781,678UniSTS
RH 3.4 Map11680.8UniSTS
Cytogenetic Map1q55UniSTS
RH144593  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,130,175 - 256,130,341 (+)MAPPERmRatBN7.2
Rnor_6.01277,896,927 - 277,897,092NCBIRnor6.0
Rnor_5.01285,276,460 - 285,276,625UniSTSRnor5.0
RGSC_v3.41263,422,224 - 263,422,389UniSTSRGSC3.4
Celera1251,824,391 - 251,824,556UniSTS
RH 3.4 Map11680.4UniSTS
Cytogenetic Map1q55UniSTS
BF387847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,127,756 - 256,127,906 (+)MAPPERmRatBN7.2
Rnor_6.01277,894,509 - 277,894,658NCBIRnor6.0
Rnor_5.01285,274,042 - 285,274,191UniSTSRnor5.0
RGSC_v3.41263,419,806 - 263,419,955UniSTSRGSC3.4
Celera1251,821,974 - 251,822,123UniSTS
RH 3.4 Map11680.3UniSTS
Cytogenetic Map1q55UniSTS
BF388033  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,200,132 - 256,200,306 (+)MAPPERmRatBN7.2
Rnor_6.01277,966,818 - 277,966,991NCBIRnor6.0
Rnor_5.01285,346,339 - 285,346,512UniSTSRnor5.0
RGSC_v3.41263,494,112 - 263,494,285UniSTSRGSC3.4
Celera1251,894,369 - 251,894,542UniSTS
RH 3.4 Map11677.5UniSTS
Cytogenetic Map1q55UniSTS
BF399361  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,084,987 - 256,085,161 (+)MAPPERmRatBN7.2
Rnor_6.01277,854,572 - 277,854,745NCBIRnor6.0
Rnor_5.01285,234,390 - 285,234,563UniSTSRnor5.0
Celera1251,780,561 - 251,780,734UniSTS
RH 3.4 Map11677.5UniSTS
Cytogenetic Map1q55UniSTS
RH141446  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,141,315 - 256,141,497 (+)MAPPERmRatBN7.2
Rnor_6.01277,908,067 - 277,908,248NCBIRnor6.0
Rnor_5.01285,287,600 - 285,287,781UniSTSRnor5.0
RGSC_v3.41263,433,364 - 263,433,545UniSTSRGSC3.4
Celera1251,835,531 - 251,835,712UniSTS
RH 3.4 Map11678.9UniSTS
Cytogenetic Map1q55UniSTS
AA944848  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,138,832 - 256,139,030 (+)MAPPERmRatBN7.2
Rnor_6.01277,905,584 - 277,905,781NCBIRnor6.0
Rnor_5.01285,285,117 - 285,285,314UniSTSRnor5.0
RGSC_v3.41263,430,881 - 263,431,078UniSTSRGSC3.4
Celera1251,833,048 - 251,833,245UniSTS
RH 3.4 Map11679.4UniSTS
Cytogenetic Map1q55UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC105867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: NM_001395154   ⟹   NP_001382083
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,088,870 - 266,281,767 (-)NCBI
mRatBN7.21256,083,749 - 256,276,661 (-)NCBI
RefSeq Acc Id: NM_001395155   ⟹   NP_001382084
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,088,868 - 266,177,533 (-)NCBI
mRatBN7.21256,083,747 - 256,172,413 (-)NCBI
RefSeq Acc Id: XM_039110220   ⟹   XP_038966148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,089,420 - 266,377,153 (-)NCBI
mRatBN7.21256,084,298 - 256,372,048 (-)NCBI
RefSeq Acc Id: XM_039110273   ⟹   XP_038966201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,103,496 - 266,377,169 (-)NCBI
mRatBN7.21256,098,058 - 256,372,075 (-)NCBI
RefSeq Acc Id: XM_039110288   ⟹   XP_038966216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,103,496 - 266,377,159 (-)NCBI
mRatBN7.21256,098,058 - 256,372,062 (-)NCBI
RefSeq Acc Id: XM_039110296   ⟹   XP_038966224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,123,607 - 266,377,166 (-)NCBI
mRatBN7.21256,115,564 - 256,372,073 (-)NCBI
RefSeq Acc Id: XM_039110316   ⟹   XP_038966244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,089,420 - 266,280,760 (-)NCBI
mRatBN7.21256,084,293 - 256,275,654 (-)NCBI
RefSeq Acc Id: XM_039110327   ⟹   XP_038966255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,089,420 - 266,281,886 (-)NCBI
mRatBN7.21256,084,293 - 256,276,748 (-)NCBI
RefSeq Acc Id: XM_063288149   ⟹   XP_063144219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,462 - 266,377,165 (-)NCBI
RefSeq Acc Id: XM_063288152   ⟹   XP_063144222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,462 - 266,377,165 (-)NCBI
RefSeq Acc Id: XM_063288159   ⟹   XP_063144229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,463 - 266,377,164 (-)NCBI
RefSeq Acc Id: XM_063288164   ⟹   XP_063144234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,462 - 266,309,426 (-)NCBI
RefSeq Acc Id: XM_063288167   ⟹   XP_063144237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,462 - 266,261,236 (-)NCBI
RefSeq Acc Id: XM_063288169   ⟹   XP_063144239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,462 - 266,377,165 (-)NCBI
RefSeq Acc Id: XM_063288172   ⟹   XP_063144242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,463 - 266,377,161 (-)NCBI
RefSeq Acc Id: XM_063288177   ⟹   XP_063144247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,464 - 266,377,157 (-)NCBI
RefSeq Acc Id: XM_063288185   ⟹   XP_063144255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,462 - 266,377,165 (-)NCBI
RefSeq Acc Id: XM_063288189   ⟹   XP_063144259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,463 - 266,261,247 (-)NCBI
RefSeq Acc Id: XM_063288194   ⟹   XP_063144264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,464 - 266,377,158 (-)NCBI
RefSeq Acc Id: XM_063288202   ⟹   XP_063144272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,464 - 266,377,157 (-)NCBI
RefSeq Acc Id: XM_063288205   ⟹   XP_063144275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,464 - 266,377,155 (-)NCBI
RefSeq Acc Id: XM_063288206   ⟹   XP_063144276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,464 - 266,377,157 (-)NCBI
RefSeq Acc Id: XM_063288210   ⟹   XP_063144280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,465 - 266,377,150 (-)NCBI
RefSeq Acc Id: XM_063288216   ⟹   XP_063144286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,463 - 266,377,160 (-)NCBI
RefSeq Acc Id: XM_063288219   ⟹   XP_063144289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,465 - 266,377,150 (-)NCBI
RefSeq Acc Id: XM_063288221   ⟹   XP_063144291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,463 - 266,377,156 (-)NCBI
RefSeq Acc Id: XM_063288226   ⟹   XP_063144296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,465 - 266,377,148 (-)NCBI
RefSeq Acc Id: XM_063288227   ⟹   XP_063144297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,466 - 266,261,213 (-)NCBI
RefSeq Acc Id: XM_063288228   ⟹   XP_063144298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,466 - 266,377,140 (-)NCBI
RefSeq Acc Id: XM_063288233   ⟹   XP_063144303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,466 - 266,337,639 (-)NCBI
RefSeq Acc Id: XM_063288235   ⟹   XP_063144305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,465 - 266,261,216 (-)NCBI
RefSeq Acc Id: XM_063288237   ⟹   XP_063144307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,465 - 266,377,148 (-)NCBI
RefSeq Acc Id: XM_063288242   ⟹   XP_063144312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,096,458 - 266,177,486 (-)NCBI
RefSeq Acc Id: XM_063288249   ⟹   XP_063144319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,123,607 - 266,377,149 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001382083 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382084 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966148 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966201 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966216 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966224 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966244 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966255 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144219 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144222 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144229 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144234 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144237 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144239 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144242 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144247 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144255 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144259 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144264 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144272 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144275 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144276 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144280 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144286 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144289 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144291 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144296 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144297 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144298 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144303 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144305 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144307 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144312 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144319 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05868 (Get FASTA)   NCBI Sequence Viewer  
  EDL94509 (Get FASTA)   NCBI Sequence Viewer  
  EDL94510 (Get FASTA)   NCBI Sequence Viewer  
  EDL94511 (Get FASTA)   NCBI Sequence Viewer  
  EDL94512 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018694.7
  ENSRNOP00000069687.2
  ENSRNOP00000076718.1
  ENSRNOP00000076813.1
  ENSRNOP00000082920.1
  ENSRNOP00000083861.1
  ENSRNOP00000086138.1
  ENSRNOP00000089021.1
  ENSRNOP00000091051.1
RefSeq Acc Id: XP_038966255   ⟸   XM_039110327
- Peptide Label: isoform X32
- UniProtKB: A0A8I5ZVV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966244   ⟸   XM_039110316
- Peptide Label: isoform X30
- UniProtKB: A0A8I5ZVV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966148   ⟸   XM_039110220
- Peptide Label: isoform X31
- UniProtKB: A0A8I6A592 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966201   ⟸   XM_039110273
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038966216   ⟸   XM_039110288
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038966224   ⟸   XM_039110296
- Peptide Label: isoform X28
RefSeq Acc Id: NP_001382084   ⟸   NM_001395155
- Peptide Label: isoform 2
- UniProtKB: Q3KR72 (UniProtKB/TrEMBL),   A0A0G2JW01 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001382083   ⟸   NM_001395154
- Peptide Label: isoform 1
- UniProtKB: A0A8I5Y6A1 (UniProtKB/TrEMBL),   A0A8I5ZVV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144312   ⟸   XM_063288242
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063144239   ⟸   XM_063288169
- Peptide Label: isoform X6
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144255   ⟸   XM_063288185
- Peptide Label: isoform X9
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144222   ⟸   XM_063288152
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A592 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144219   ⟸   XM_063288149
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A592 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144234   ⟸   XM_063288164
- Peptide Label: isoform X4
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144237   ⟸   XM_063288167
- Peptide Label: isoform X5
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144229   ⟸   XM_063288159
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A592 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144242   ⟸   XM_063288172
- Peptide Label: isoform X7
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144286   ⟸   XM_063288216
- Peptide Label: isoform X16
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144291   ⟸   XM_063288221
- Peptide Label: isoform X18
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144259   ⟸   XM_063288189
- Peptide Label: isoform X10
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144264   ⟸   XM_063288194
- Peptide Label: isoform X11
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144276   ⟸   XM_063288206
- Peptide Label: isoform X14
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144247   ⟸   XM_063288177
- Peptide Label: isoform X8
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144272   ⟸   XM_063288202
- Peptide Label: isoform X12
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144275   ⟸   XM_063288205
- Peptide Label: isoform X13
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144289   ⟸   XM_063288219
- Peptide Label: isoform X17
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144280   ⟸   XM_063288210
- Peptide Label: isoform X15
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144307   ⟸   XM_063288237
- Peptide Label: isoform X25
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144296   ⟸   XM_063288226
- Peptide Label: isoform X19
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144305   ⟸   XM_063288235
- Peptide Label: isoform X24
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144298   ⟸   XM_063288228
- Peptide Label: isoform X21
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144303   ⟸   XM_063288233
- Peptide Label: isoform X22
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144297   ⟸   XM_063288227
- Peptide Label: isoform X20
- UniProtKB: F1LWK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144319   ⟸   XM_063288249
- Peptide Label: isoform X29
Protein Domains
HP   LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JW01-F1-model_v2 AlphaFold A0A0G2JW01 1-427 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565768 AgrOrtholog
BioCyc Gene G2FUF-55302 BioCyc
Ensembl Genes ENSRNOG00000046333 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018693.8 UniProtKB/TrEMBL
  ENSRNOT00000078416.2 UniProtKB/TrEMBL
  ENSRNOT00000094056.1 UniProtKB/TrEMBL
  ENSRNOT00000094452.1 UniProtKB/TrEMBL
  ENSRNOT00000096928.1 UniProtKB/TrEMBL
  ENSRNOT00000106287.1 UniProtKB/TrEMBL
  ENSRNOT00000108182.1 UniProtKB/TrEMBL
  ENSRNOT00000109951.1 UniProtKB/TrEMBL
  ENSRNOT00000117785.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.950.10 UniProtKB/TrEMBL
  Cysteine Rich Protein UniProtKB/TrEMBL
InterPro AbLIM_anchor UniProtKB/TrEMBL
  Actin-binding_LIM UniProtKB/TrEMBL
  Villin_headpiece UniProtKB/TrEMBL
  Villin_headpiece_dom_sf UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
NCBI Gene 307989 ENTREZGENE
PANTHER ACTIN-BINDING LIM PROTEIN UniProtKB/TrEMBL
  PTHR24213:SF18 UniProtKB/TrEMBL
Pfam AbLIM_anchor UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
PharmGKB ABLIM1 RGD
PhenoGen Ablim1 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PS51089 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046333 RatGTEx
SMART LIM UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
UniProt A0A0G2JW01 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y6A1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y740_RAT UniProtKB/TrEMBL
  A0A8I5ZVV8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A592 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABC6_RAT UniProtKB/TrEMBL
  A0A8I6G9J9_RAT UniProtKB/TrEMBL
  A0A8I6GGU3_RAT UniProtKB/TrEMBL
  F1LWK7 ENTREZGENE, UniProtKB/TrEMBL
  Q3KR72 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ablim1  actin-binding LIM protein 1  LOC102550100  uncharacterized LOC102550100  Data merged from RGD:7736502 737654 PROVISIONAL
2013-12-18 LOC102550100  uncharacterized LOC102550100      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Ablim1  actin-binding LIM protein 1   Ablim1_predicted  actin-binding LIM protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-09-28 Ablim1_predicted  actin-binding LIM protein 1 (predicted)  RGD1565768_predicted  similar to actin-binding LIM protein 1 long isoform (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565768_predicted  similar to actin-binding LIM protein 1 long isoform (predicted)  LOC307989  similar to actin-binding LIM protein 1 long isoform  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307989  similar to actin-binding LIM protein 1 long isoform      Symbol and Name status set to provisional 70820 PROVISIONAL