Ablim1 (actin-binding LIM protein 1) - Rat Genome Database

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Gene: Ablim1 (actin-binding LIM protein 1) Mus musculus
Analyze
Symbol: Ablim1
Name: actin-binding LIM protein 1
RGD ID: 1623793
MGI Page MGI
Description: Enables actin binding activity. Acts upstream of or within axon guidance and positive regulation of transcription by RNA polymerase II. Located in actin cytoskeleton. Is active in postsynaptic density. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; lateral plate mesoderm; and node. Orthologous to human ABLIM1 (actin binding LIM protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210411C18Rik; 2610209L21Rik; 4833406P10Rik; 9330196J19Rik; abL; abLI; abLIM-1; abLIM-L; abLIM-M; abLIM-S; actin-binding double zinc finger protein; actin-binding LIM protein family member 1; AV079770; AW060987; AW215784; Lim; Limab1; mKIAA0059
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391957,021,165 - 57,303,776 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1957,021,165 - 57,303,351 (-)EnsemblGRCm39 Ensembl
GRCm381957,032,733 - 57,315,344 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1957,032,733 - 57,314,919 (-)EnsemblGRCm38mm10GRCm38
MGSCv371957,107,754 - 57,290,522 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361957,090,390 - 57,269,282 (-)NCBIMGSCv36mm8
Celera1959,226,385 - 59,408,337 (-)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1952.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ablim1Mousesubstance-related disorder  ISORGD:134615211554173CTD Direct Evidence: marker/mechanismCTDPMID:20098672

1 to 20 of 137 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ablim1Mouse(1->4)-beta-D-glucan multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of ABLIM1 mRNACTDPMID:36331819
Ablim1Mouse1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Ablim1Mouse1,2-dichloroethane affects expressionEXP 6480464ethylene dichloride affects the expression of ABLIM1 mRNACTDPMID:28960355
Ablim1Mouse1,2-dimethylhydrazine increases expressionEXP 64804641,2-Dimethylhydrazine results in increased expression of ABLIM1 mRNACTDPMID:22206623
Ablim1Mouse17beta-estradiol multiple interactionsISORGD:13461526480464[Estradiol co-treated with Progesterone] results in decreased expression of ABLIM1 mRNA; [Estradiol co-treated with TGFB1 more ...CTDPMID:20660070|PMID:30165855
Ablim1Mouse17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of ABLIM1 mRNACTDPMID:39298647
Ablim1Mouse17beta-estradiol affects expressionISORGD:13461526480464Estradiol affects the expression of ABLIM1 mRNACTDPMID:14699072
Ablim1Mouse2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Ablim1Mouse2,2',5,5'-tetrachlorobiphenyl multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Ablim1Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of ABLIM1 mRNACTDPMID:21570461
Ablim1Mouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ABLIM1 mRNACTDPMID:19770486|PMID:25975270|PMID:26290441
Ablim1Mouse2,4,4'-trichlorobiphenyl multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Ablim1Mouse2,6-dimethoxyphenol multiple interactionsISORGD:13461526480464[Sodium Chloride co-treated with pyrogallol 1,3-dimethyl ether] results in increased expression of and affects the more ...CTDPMID:38598786
Ablim1Mouse2-methylcholine affects expressionISORGD:13461526480464beta-methylcholine affects the expression of ABLIM1 mRNACTDPMID:21179406
Ablim1Mouse3,4-methylenedioxymethamphetamine decreases expressionEXP 6480464N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of ABLIM1 mRNACTDPMID:26251327
Ablim1Mouse4,4'-diaminodiphenylmethane decreases expressionEXP 64804644,4'-diaminodiphenylmethane results in decreased expression of ABLIM1 mRNACTDPMID:18648102
Ablim1Mouse4,4'-diaminodiphenylmethane increases expressionISORGD:156576864804644,4'-diaminodiphenylmethane results in increased expression of ABLIM1 mRNACTDPMID:30723492
Ablim1Mouse4,4'-sulfonyldiphenol increases expressionEXP 6480464bisphenol S results in increased expression of ABLIM1 mRNACTDPMID:30951980
Ablim1Mouse4,4'-sulfonyldiphenol decreases expressionEXP 6480464bisphenol S results in decreased expression of ABLIM1 mRNACTDPMID:39298647
Ablim1Mouse8-Br-cAMP decreases expressionISORGD:134615264804648-Bromo Cyclic Adenosine Monophosphate results in decreased expression of ABLIM1 mRNACTDPMID:22079614

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Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ablim1Mouseaxon guidance acts_upstream_of_or_withinIDA 2290270 PMID:11163266MGIPMID:11163266
Ablim1Mousecilium assembly acts_upstream_of_or_withinISOUniProtKB:O146392290270 PMID:22684256MGIPMID:22684256
Ablim1Mousecilium assembly involved_inIBAPANTHER:PTN002794748|UniProtKB:O146392290270 GO_CentralGO_REF:0000033
Ablim1Mousecytoskeleton organization involved_inIEAInterPro:IPR003128|InterPro:IPR0368862290270 InterProGO_REF:0000002
Ablim1Mouselamellipodium assembly involved_inIBAPANTHER:PTN001198097|UniProtKB:O94929|UniProtKB:O146392290270 GO_CentralGO_REF:0000033
Ablim1Mouselamellipodium assembly acts_upstream_of_or_withinISOUniProtKB:O146392290270 PMID:22684256MGIPMID:22684256
Ablim1Mousepositive regulation of transcription by RNA polymerase II acts_upstream_of_or_withinIMP 2290270 PMID:17194709MGIPMID:17194709
Ablim1Mousetranscription by RNA polymerase II acts_upstream_ofIMP 2290270 PMID:17194709MGIPMID:17194709

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ablim1Mouseactin cytoskeleton is_active_inIBAPANTHER:PTN001198097|UniProtKB:O94929|UniProtKB:Q6H8Q1|UniProtKB:O14639|MGI:1194500|UniProtKB:Q084952290270 GO_CentralGO_REF:0000033
Ablim1Mouseactin cytoskeleton located_inIDA 2290270 PMID:9245787MGIPMID:9245787
Ablim1Mousecytoplasm located_inIEAUniProtKB-SubCell:SL-00862290270 UniProtGO_REF:0000044
Ablim1Mouselamellipodium located_inISOUniProtKB:O146392290270 PMID:22684256MGIPMID:22684256
Ablim1Mousepostsynaptic density is_active_inIEP 2290270 PMID:19455133SynGOPMID:19455133
Ablim1Mousepostsynaptic density located_inIDA 2290270 PMID:17114649MGIPMID:17114649
Ablim1Mousepostsynaptic density is_active_inIDA 2290270 PMID:19455133SynGOPMID:19455133
Ablim1Mousestress fiber located_inISOUniProtKB:O146392290270 PMID:22684256MGIPMID:22684256
Ablim1Mousestress fiber is_active_inIBAPANTHER:PTN002794748|UniProtKB:O146392290270 GO_CentralGO_REF:0000033
1 to 9 of 9 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ablim1Mouseactin binding enablesIDA 2290270 PMID:9245787MGIPMID:9245787
Ablim1Mouseactin filament binding enablesIBAPANTHER:PTN001198097|WB:WBGene000068392290270 GO_CentralGO_REF:0000033
Ablim1Mousemetal ion binding enablesIEAUniProtKB-KW:KW-04792290270 UniProtGO_REF:0000043
Ablim1Mouseprotein binding  ISORGD:6216609068941 RGDPMID:15024025|REF_RGD_ID:1581350
Ablim1Mouseprotein binding enablesIPIUniProtKB:Q621082290270 PMID:19455133, PMID:28671696IntActPMID:19455133|PMID:28671696

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ablim1Mouseno abnormal phenotype detected  IAGP 5509061 MGIPMID:12849746

#
Reference Title
Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:9245787   PMID:9417918   PMID:9799617   PMID:10349636   PMID:10602987   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11163266   PMID:11217851   PMID:12466851  
PMID:12477932   PMID:12693553   PMID:12849746   PMID:14610273   PMID:15345747   PMID:15572359   PMID:15618518   PMID:15647317   PMID:16141072   PMID:16141073   PMID:16452087   PMID:17114649  
PMID:17194709   PMID:18287559   PMID:18434421   PMID:19075228   PMID:19455133   PMID:19563800   PMID:20412781   PMID:20487527   PMID:21194568   PMID:21873635   PMID:22684256   PMID:22988430  
PMID:24457600   PMID:27507650   PMID:28671696   PMID:28706196   PMID:29445148   PMID:29518331   PMID:29904924   PMID:29921413   PMID:30196744   PMID:32325033   PMID:33378226   PMID:33397958  
PMID:34255829   PMID:36293380   PMID:36417873   PMID:37142655   PMID:38355793  



Ablim1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391957,021,165 - 57,303,776 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1957,021,165 - 57,303,351 (-)EnsemblGRCm39 Ensembl
GRCm381957,032,733 - 57,315,344 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1957,032,733 - 57,314,919 (-)EnsemblGRCm38mm10GRCm38
MGSCv371957,107,754 - 57,290,522 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361957,090,390 - 57,269,282 (-)NCBIMGSCv36mm8
Celera1959,226,385 - 59,408,337 (-)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1952.09NCBI
ABLIM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810114,431,110 - 114,801,373 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10114,431,110 - 114,768,061 (-)EnsemblGRCh38hg38GRCh38
GRCh3710116,190,869 - 116,528,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610116,180,859 - 116,434,404 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410116,180,859 - 116,276,675NCBI
Celera10109,920,119 - 110,173,614 (-)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10109,817,609 - 110,070,887 (-)NCBIHuRef
CHM1_110116,474,653 - 116,728,179 (-)NCBICHM1_1
T2T-CHM13v2.010115,325,183 - 115,686,686 (-)NCBIT2T-CHM13v2.0
Ablim1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81266,088,868 - 266,377,169 (-)NCBIGRCr8
mRatBN7.21256,083,747 - 256,372,075 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1256,084,297 - 256,371,969 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1264,293,977 - 264,485,616 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01271,000,027 - 271,191,663 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01263,645,117 - 263,836,899 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01277,853,877 - 278,043,096 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01285,233,699 - 285,420,807 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41263,380,818 - 263,465,905 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1251,779,866 - 252,069,514 (-)NCBICelera
Cytogenetic Map1q55NCBI
Ablim1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543119,402,023 - 19,683,589 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543119,397,136 - 19,684,574 (-)NCBIChiLan1.0ChiLan1.0
ABLIM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28126,315,945 - 126,645,544 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110126,321,282 - 126,650,889 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010111,030,953 - 111,360,527 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110114,460,703 - 114,712,858 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10114,465,838 - 114,712,561 (-)Ensemblpanpan1.1panPan2
ABLIM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12825,260,323 - 25,543,369 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2825,260,873 - 25,545,304 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2825,412,116 - 25,695,587 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02825,794,442 - 26,078,835 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2825,793,574 - 26,078,829 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12825,349,757 - 25,633,749 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02825,364,845 - 25,649,366 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02825,558,277 - 25,842,977 (-)NCBIUU_Cfam_GSD_1.0
Ablim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721320,654,882 - 20,840,766 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364864,722,279 - 4,925,551 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364864,720,643 - 4,906,460 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABLIM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14124,760,404 - 125,010,892 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114124,759,811 - 125,108,722 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214135,882,251 - 136,231,438 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABLIM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19107,298,018 - 107,638,915 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9107,302,821 - 107,524,945 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604868,532,262 - 68,873,635 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ablim1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473731,943,110 - 32,164,451 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473731,856,202 - 32,169,116 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ablim1
12728 total Variants

Predicted Target Of
Summary Value
Count of predictions:8565
Count of miRNA genes:880
Interacting mature miRNAs:1248
Transcripts:ENSMUST00000079360, ENSMUST00000099294, ENSMUST00000104902, ENSMUST00000111524, ENSMUST00000111526, ENSMUST00000111528, ENSMUST00000111529, ENSMUST00000111544, ENSMUST00000111546, ENSMUST00000111550, ENSMUST00000111555, ENSMUST00000111558, ENSMUST00000111559, ENSMUST00000127198, ENSMUST00000128212, ENSMUST00000133369, ENSMUST00000133782, ENSMUST00000134430, ENSMUST00000137389, ENSMUST00000150425, ENSMUST00000156316
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193959606661420004Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
11528548Sluc35_msusceptibility to lung cancer 35 (mouse)195537605059123872Mouse

1 to 10 of 19 rows
AW060987  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381957,033,597 - 57,033,694UniSTSGRCm38
MGSCv371957,108,087 - 57,108,184UniSTSGRCm37
Celera1959,226,718 - 59,226,815UniSTS
Cytogenetic Map19D2UniSTS
cM Map1953.0UniSTS
Whitehead/MRC_RH19600.43UniSTS
AW215784  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381957,035,148 - 57,035,284UniSTSGRCm38
MGSCv371957,109,638 - 57,109,774UniSTSGRCm37
Celera1959,228,269 - 59,228,405UniSTS
Cytogenetic Map19D2UniSTS
cM Map1953.0UniSTS
Whitehead/MRC_RH19600.43UniSTS
BB143722  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381957,148,431 - 57,148,539UniSTSGRCm38
MGSCv371957,222,921 - 57,223,029UniSTSGRCm37
Celera1959,340,873 - 59,340,981UniSTS
Cytogenetic Map19D2UniSTS
cM Map1953.0UniSTS
Whitehead/MRC_RH19598.52UniSTS
D19Mit105  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381957,129,061 - 57,129,150UniSTSGRCm38
MGSCv371957,203,551 - 57,203,640UniSTSGRCm37
Cytogenetic Map19D2UniSTS
cM Map1953.0UniSTS
Whitehead Genetic1947.0UniSTS
Whitehead/MRC_RH19600.43UniSTS
Whitehead_YAC19 UniSTS
AV079770  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381957,116,120 - 57,116,208UniSTSGRCm38
MGSCv371957,190,610 - 57,190,698UniSTSGRCm37
Celera1959,308,460 - 59,308,548UniSTS
Cytogenetic Map19D2UniSTS
cM Map1953.0UniSTS
Whitehead/MRC_RH19600.43UniSTS
D19Dcr65  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381957,052,377 - 57,052,472UniSTSGRCm38
Celera1959,245,464 - 59,245,555UniSTS
Cytogenetic Map19D2UniSTS
cM Map19 UniSTS






1 to 30 of 73 rows
RefSeq Transcripts NM_001103177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001103178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 73 rows

Ensembl Acc Id: ENSMUST00000079360   ⟹   ENSMUSP00000078336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,021,165 - 57,204,464 (-)Ensembl
GRCm38.p6 Ensembl1957,032,733 - 57,216,032 (-)Ensembl
Ensembl Acc Id: ENSMUST00000099294   ⟹   ENSMUSP00000096897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,021,706 - 57,186,063 (-)Ensembl
GRCm38.p6 Ensembl1957,033,274 - 57,197,631 (-)Ensembl
Ensembl Acc Id: ENSMUST00000104902   ⟹   ENSMUSP00000127818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,021,699 - 57,107,441 (-)Ensembl
GRCm38.p6 Ensembl1957,033,267 - 57,119,009 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111524   ⟹   ENSMUSP00000107149
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,119,038 - 57,303,343 (-)Ensembl
GRCm38.p6 Ensembl1957,130,606 - 57,314,911 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111526   ⟹   ENSMUSP00000107151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,024,911 - 57,107,345 (-)Ensembl
GRCm38.p6 Ensembl1957,036,479 - 57,118,913 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111528   ⟹   ENSMUSP00000107153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,024,850 - 57,107,439 (-)Ensembl
GRCm38.p6 Ensembl1957,036,418 - 57,119,007 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111529   ⟹   ENSMUSP00000107154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,021,322 - 57,107,441 (-)Ensembl
GRCm38.p6 Ensembl1957,032,890 - 57,119,009 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111544   ⟹   ENSMUSP00000107169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,025,614 - 57,185,928 (-)Ensembl
GRCm38.p6 Ensembl1957,037,182 - 57,197,496 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111546   ⟹   ENSMUSP00000107172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,025,572 - 57,185,823 (-)Ensembl
GRCm38.p6 Ensembl1957,037,140 - 57,197,391 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111550   ⟹   ENSMUSP00000107175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,025,116 - 57,185,888 (-)Ensembl
GRCm38.p6 Ensembl1957,036,684 - 57,197,456 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111555   ⟹   ENSMUSP00000107180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,025,436 - 57,204,397 (-)Ensembl
GRCm38.p6 Ensembl1957,037,004 - 57,215,965 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111558   ⟹   ENSMUSP00000107183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,025,398 - 57,228,293 (-)Ensembl
GRCm38.p6 Ensembl1957,036,966 - 57,239,861 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111559   ⟹   ENSMUSP00000107184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,024,715 - 57,227,761 (-)Ensembl
GRCm38.p6 Ensembl1957,036,283 - 57,239,329 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,029,486 - 57,033,374 (-)Ensembl
GRCm38.p6 Ensembl1957,041,054 - 57,044,942 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,118,696 - 57,124,157 (-)Ensembl
GRCm38.p6 Ensembl1957,130,264 - 57,135,725 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133369   ⟹   ENSMUSP00000117798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,119,278 - 57,170,740 (-)Ensembl
GRCm38.p6 Ensembl1957,130,846 - 57,182,308 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,049,396 - 57,123,140 (-)Ensembl
GRCm38.p6 Ensembl1957,060,964 - 57,134,708 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,065,734 - 57,123,109 (-)Ensembl
GRCm38.p6 Ensembl1957,077,302 - 57,134,677 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,027,879 - 57,035,670 (-)Ensembl
GRCm38.p6 Ensembl1957,039,447 - 57,047,238 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150425
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,104,454 - 57,107,456 (-)Ensembl
GRCm38.p6 Ensembl1957,116,022 - 57,119,024 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,025,683 - 57,303,351 (-)Ensembl
GRCm38.p6 Ensembl1957,037,251 - 57,314,919 (-)Ensembl
RefSeq Acc Id: NM_001103177   ⟹   NP_001096647
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,165 - 57,186,063 (-)NCBI
GRCm381957,032,733 - 57,197,631 (-)NCBI
MGSCv371957,107,754 - 57,290,522 (-)RGD
Celera1959,226,385 - 59,408,337 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001103178   ⟹   NP_001096648
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,165 - 57,107,456 (-)NCBI
GRCm381957,032,733 - 57,119,024 (-)NCBI
MGSCv371957,107,754 - 57,290,522 (-)RGD
Celera1959,226,385 - 59,408,337 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001290813   ⟹   NP_001277742
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,165 - 57,204,464 (-)NCBI
GRCm381957,032,733 - 57,216,032 (-)NCBI
Celera1959,226,385 - 59,408,337 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001290815   ⟹   NP_001277744
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,165 - 57,186,063 (-)NCBI
GRCm381957,032,733 - 57,197,631 (-)NCBI
Celera1959,226,385 - 59,408,337 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001290816   ⟹   NP_001277745
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,165 - 57,186,063 (-)NCBI
GRCm381957,032,733 - 57,197,631 (-)NCBI
Celera1959,226,385 - 59,408,337 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001347459   ⟹   NP_001334388
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,165 - 57,107,456 (-)NCBI
GRCm381957,032,733 - 57,119,024 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362445   ⟹   NP_001349374
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,165 - 57,303,351 (-)NCBI
GRCm381957,032,733 - 57,314,919 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362446   ⟹   NP_001349375
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,165 - 57,263,100 (-)NCBI
GRCm381957,032,733 - 57,274,668 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178688   ⟹   NP_848803
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,165 - 57,204,464 (-)NCBI
GRCm381957,032,733 - 57,216,032 (-)NCBI
MGSCv371957,107,754 - 57,290,522 (-)RGD
Celera1959,226,385 - 59,408,337 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527028   ⟹   XP_006527091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,953 (-)NCBI
GRCm381957,033,272 - 57,239,551 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527033   ⟹   XP_006527096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,944 (-)NCBI
GRCm381957,033,272 - 57,239,544 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527034   ⟹   XP_006527097
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,946 (-)NCBI
GRCm381957,033,272 - 57,239,545 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527035   ⟹   XP_006527098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,945 (-)NCBI
GRCm381957,033,272 - 57,239,544 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527036   ⟹   XP_006527099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,950 (-)NCBI
GRCm381957,033,272 - 57,239,547 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527037   ⟹   XP_006527100
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,934 (-)NCBI
GRCm381957,033,272 - 57,239,537 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527038   ⟹   XP_006527101
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,938 (-)NCBI
GRCm381957,033,272 - 57,239,541 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527039   ⟹   XP_006527102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,937 (-)NCBI
GRCm381957,033,272 - 57,239,540 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527040   ⟹   XP_006527103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,942 (-)NCBI
GRCm381957,033,272 - 57,239,541 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527041   ⟹   XP_006527104
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,928 (-)NCBI
GRCm381957,033,272 - 57,239,534 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527044   ⟹   XP_006527107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,934 (-)NCBI
GRCm381957,033,272 - 57,239,538 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527048   ⟹   XP_006527111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,108,085 (-)NCBI
GRCm381957,033,272 - 57,119,677 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318172   ⟹   XP_017173661
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,952 (-)NCBI
GRCm381957,033,272 - 57,239,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318173   ⟹   XP_017173662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,170,778 (-)NCBI
GRCm381957,033,272 - 57,182,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318174   ⟹   XP_017173663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,186,057 (-)NCBI
GRCm381957,033,272 - 57,197,637 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318175   ⟹   XP_017173664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,303,512 (-)NCBI
GRCm381957,033,272 - 57,315,081 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318177   ⟹   XP_017173666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,939 (-)NCBI
GRCm381957,033,272 - 57,239,541 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318178   ⟹   XP_017173667
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,927 (-)NCBI
GRCm381957,033,272 - 57,239,532 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318179   ⟹   XP_017173668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,931 (-)NCBI
GRCm381957,033,272 - 57,239,534 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318181   ⟹   XP_017173670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,921 (-)NCBI
GRCm381957,033,272 - 57,239,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318182   ⟹   XP_017173671
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,108,094 (-)NCBI
GRCm381957,033,272 - 57,121,839 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318183   ⟹   XP_017173672
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,123,434 (-)NCBI
GRCm381957,033,272 - 57,135,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318184   ⟹   XP_017173673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,108,077 (-)NCBI
GRCm381957,033,272 - 57,119,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318186   ⟹   XP_017173675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,107,585 (-)NCBI
GRCm381957,033,272 - 57,119,661 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250912   ⟹   XP_030106772
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,186,302 (-)NCBI
GRCm381957,033,272 - 57,197,870 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250913   ⟹   XP_030106773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,303,776 (-)NCBI
GRCm381957,033,272 - 57,315,344 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250914   ⟹   XP_030106774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,227,935 (-)NCBI
GRCm381957,033,272 - 57,239,538 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250915   ⟹   XP_030106775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,186,302 (-)NCBI
GRCm381957,033,272 - 57,197,870 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250916   ⟹   XP_030106776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,303,776 (-)NCBI
GRCm381957,033,272 - 57,315,344 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250917   ⟹   XP_030106777
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,303,776 (-)NCBI
GRCm381957,033,272 - 57,315,344 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250918   ⟹   XP_030106778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,108,081 (-)NCBI
GRCm381957,033,272 - 57,119,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250919   ⟹   XP_030106779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,021,704 - 57,108,078 (-)NCBI
GRCm381957,033,272 - 57,119,666 (-)NCBI
Sequence:
1 to 30 of 69 rows
Protein RefSeqs NP_001096647 (Get FASTA)   NCBI Sequence Viewer  
  NP_001096648 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277742 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277744 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277745 (Get FASTA)   NCBI Sequence Viewer  
  NP_001334388 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349374 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349375 (Get FASTA)   NCBI Sequence Viewer  
  NP_848803 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527091 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527096 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527097 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527098 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527099 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527100 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527101 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527102 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527103 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527104 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527107 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527111 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173661 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173662 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173663 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173664 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173666 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173667 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173668 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173670 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173671 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 69 rows
1 to 5 of 55 rows
1 to 5 of 55 rows
RefSeq Acc Id: NP_848803   ⟸   NM_178688
- Peptide Label: isoform 1
- UniProtKB: Q8K4G5 (UniProtKB/Swiss-Prot),   Q8K4G4 (UniProtKB/Swiss-Prot),   Q8K4G3 (UniProtKB/Swiss-Prot),   Q8BIR9 (UniProtKB/Swiss-Prot),   Q80U86 (UniProtKB/Swiss-Prot),   E9QK41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001096647   ⟸   NM_001103177
- Peptide Label: isoform 2
- UniProtKB: Q3UP03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001096648   ⟸   NM_001103178
- Peptide Label: isoform 3
- UniProtKB: E9Q030 (UniProtKB/TrEMBL),   E9Q9D2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527091   ⟸   XM_006527028
- Peptide Label: isoform X1
- UniProtKB: Q8K4G5 (UniProtKB/Swiss-Prot),   Q8K4G4 (UniProtKB/Swiss-Prot),   Q8K4G3 (UniProtKB/Swiss-Prot),   Q8BIR9 (UniProtKB/Swiss-Prot),   Q80U86 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006527099   ⟸   XM_006527036
- Peptide Label: isoform X11
- UniProtKB: E9Q9C4 (UniProtKB/TrEMBL)
- Sequence:
HP   LIM zinc-binding

Name Modeler Protein Id AA Range Protein Structure
AF-Q8K4G5-F1-model_v2 AlphaFold Q8K4G5 1-861 view protein structure

RGD ID:13679852
Promoter ID:EPDNEW_M24075
Type:initiation region
Name:Ablim1_2
Description:Mus musculus actin-binding LIM protein 1 , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24076  EPDNEW_M24077  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381957,118,957 - 57,119,017EPDNEW
RGD ID:6829727
Promoter ID:MM_KWN:27417
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000039432
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,119,031 - 57,119,531 (-)MPROMDB
RGD ID:6829725
Promoter ID:MM_KWN:27418
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000039431
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,120,991 - 57,121,491 (-)MPROMDB
RGD ID:13679854
Promoter ID:EPDNEW_M24076
Type:single initiation site
Name:Ablim1_3
Description:Mus musculus actin-binding LIM protein 1 , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24075  EPDNEW_M24077  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381957,134,793 - 57,134,853EPDNEW
RGD ID:6829789
Promoter ID:MM_KWN:27419
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Spleen
Transcripts:UC008HZX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,150,851 - 57,153,872 (-)MPROMDB
RGD ID:6829814
Promoter ID:MM_KWN:27420
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Lung,   MEF_B6,   Spleen
Transcripts:ENSMUST00000111526,   ENSMUST00000111528,   ENSMUST00000111529,   NM_001103178,   OTTMUST00000039434,   UC008HZY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,193,209 - 57,193,709 (-)MPROMDB
RGD ID:6829724
Promoter ID:MM_KWN:27421
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000039427,   OTTMUST00000039430
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,209,076 - 57,209,576 (-)MPROMDB
RGD ID:6829721
Promoter ID:MM_KWN:27422
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000039425
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,210,546 - 57,211,046 (-)MPROMDB
RGD ID:6829719
Promoter ID:MM_KWN:27423
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000111522
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,247,826 - 57,248,326 (-)MPROMDB
RGD ID:6829718
Promoter ID:MM_KWN:27424
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000036802,   ENSMUST00000111538,   ENSMUST00000111541
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,249,626 - 57,250,126 (-)MPROMDB
RGD ID:6829722
Promoter ID:MM_KWN:27425
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000039429
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,256,446 - 57,256,946 (-)MPROMDB
RGD ID:6829720
Promoter ID:MM_KWN:27426
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:ENSMUST00000099294,   ENSMUST00000111544,   ENSMUST00000111546,   ENSMUST00000111550,   NM_001103177,   UC008HZT.2,   UC008HZU.2
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,272,151 - 57,272,727 (-)MPROMDB
RGD ID:13679856
Promoter ID:EPDNEW_M24077
Type:initiation region
Name:Ablim1_1
Description:Mus musculus actin-binding LIM protein 1 , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24075  EPDNEW_M24076  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381957,314,886 - 57,314,946EPDNEW


1 to 40 of 63 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000025085 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000079360 ENTREZGENE
  ENSMUST00000099294 ENTREZGENE
  ENSMUST00000099294.9 UniProtKB/Swiss-Prot
  ENSMUST00000104902 ENTREZGENE
  ENSMUST00000111524.8 UniProtKB/Swiss-Prot
  ENSMUST00000111529 ENTREZGENE
  ENSMUST00000111544 ENTREZGENE
  ENSMUST00000111546 ENTREZGENE
  ENSMUST00000111546.8 UniProtKB/Swiss-Prot
  ENSMUST00000111555 ENTREZGENE
  ENSMUST00000111558 ENTREZGENE
  ENSMUST00000111559 ENTREZGENE
Gene3D-CATH 1.10.950.10 UniProtKB/Swiss-Prot
  Cysteine Rich Protein UniProtKB/Swiss-Prot
InterPro AbLIM_anchor UniProtKB/Swiss-Prot
  Actin-binding_LIM UniProtKB/Swiss-Prot
  Villin_headpiece UniProtKB/Swiss-Prot
  Villin_headpiece_dom_sf UniProtKB/Swiss-Prot
  Znf_LIM UniProtKB/Swiss-Prot
KEGG Report mmu:226251 UniProtKB/Swiss-Prot
MGD MGI:1194500 ENTREZGENE
NCBI Gene Ablim1 ENTREZGENE
PANTHER ACTIN-BINDING LIM PROTEIN UniProtKB/Swiss-Prot
  PTHR24213:SF18 UniProtKB/Swiss-Prot
Pfam AbLIM_anchor UniProtKB/Swiss-Prot
  LIM UniProtKB/Swiss-Prot
  VHP UniProtKB/Swiss-Prot
PharmGKB ABLIM1 RGD
PhenoGen Ablim1 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot
  PS51089 UniProtKB/Swiss-Prot
SMART LIM UniProtKB/Swiss-Prot
  VHP UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  SSF47050 UniProtKB/Swiss-Prot
UniProt ABLM1_MOUSE UniProtKB/Swiss-Prot
  B9EIV0 ENTREZGENE, UniProtKB/TrEMBL
  E9Q030 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 63 rows