Poc5 (POC5 centriolar protein) - Rat Genome Database

Name: Poc5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Poc5 (POC5 centriolar protein) Rattus norvegicus

Analyze

Symbol:

Poc5

Name:

POC5 centriolar protein

RGD ID:

1310597

Description:

Predicted to be located in cytosol and nucleoplasm. Predicted to be active in centrosome. Orthologous to human POC5 (POC5 centriolar protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

centrosomal protein POC5; LOC294667; MGC114560; POC5 centriolar protein homolog; POC5 centriolar protein homolog (Chlamydomonas); protein of centriole 5; proteome of centriole 5; RGD1310597; similar to RIKEN cDNA 1200014M14

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	POC5 (POC5 centriolar protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Poc5 (POC5 centriolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Poc5 (POC5 centriolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	POC5 (POC5 centriolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	POC5 (POC5 centriolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Poc5 (POC5 centriolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	POC5 (POC5 centriolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	POC5 (POC5 centriolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UBAC2 (UBA domain containing 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Poc5 (POC5 centriolar protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	POC5 (POC5 centriolar protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	poc5 (POC5 centriolar protein homolog (Chlamydomonas))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	poc5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	29,454,392 - 29,483,468 (+)	NCBI		GRCr8
mRatBN7.2	2	27,719,745 - 27,748,805 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	27,719,762 - 27,748,805 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	34,766,108 - 34,796,050 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	32,866,193 - 32,896,136 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	27,676,683 - 27,707,445 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	27,000,303 - 27,030,646 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	27,000,327 - 27,030,754 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	46,124,180 - 46,153,690 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	26,848,282 - 26,877,049 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	26,768,650 - 26,797,418 (+)	NCBI
Celera	2	23,766,449 - 23,794,682 (+)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

retinitis pigmentosa (ISO)

Sandhoff disease (ISO)

scoliosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

methyl methanesulfonate (ISO)

N,N-diethyl-m-toluamide (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

permethrin (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

temozolomide (ISO)

thapsigargin (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

centriole (IEA)

centrosome (IBA,ISO)

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11591653	PMID:12477932	PMID:15489334	PMID:21399614

Genomics

Comparative Map Data

Poc5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	29,454,392 - 29,483,468 (+)	NCBI		GRCr8
mRatBN7.2	2	27,719,745 - 27,748,805 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	27,719,762 - 27,748,805 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	34,766,108 - 34,796,050 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	32,866,193 - 32,896,136 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	27,676,683 - 27,707,445 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	27,000,303 - 27,030,646 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	27,000,327 - 27,030,754 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	46,124,180 - 46,153,690 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	26,848,282 - 26,877,049 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	26,768,650 - 26,797,418 (+)	NCBI
Celera	2	23,766,449 - 23,794,682 (+)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

POC5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	75,674,124 - 75,717,437 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	75,674,124 - 75,717,448 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	74,969,949 - 75,013,262 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	75,005,779 - 75,049,069 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	70,863,433 - 70,906,720 (-)	NCBI		Celera
Cytogenetic Map	5	q13.3	NCBI
HuRef	5	70,175,062 - 70,218,349 (-)	NCBI		HuRef
CHM1_1	5	74,402,737 - 74,446,028 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	76,155,204 - 76,198,513 (-)	NCBI		T2T-CHM13v2.0

Poc5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	96,524,767 - 96,553,719 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	96,524,802 - 96,554,245 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	96,388,259 - 96,417,211 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	96,388,294 - 96,417,737 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	97,158,249 - 97,185,542 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	97,489,065 - 97,516,268 (+)	NCBI		MGSCv36	mm8
Celera	13	100,020,144 - 100,049,493 (+)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	50.56	NCBI

Poc5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	25,050,552 - 25,091,569 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	25,055,259 - 25,092,101 (+)	NCBI	ChiLan1.0	ChiLan1.0

POC5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	39,588,724 - 39,632,327 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	37,742,354 - 37,789,011 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	39,587,659 - 39,631,472 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	40,201,170 - 40,244,189 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	40,205,697 - 40,244,182 (+)	Ensembl	panpan1.1		panPan2

POC5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	30,708,451 - 30,745,754 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	30,709,101 - 30,745,550 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	31,951,937 - 31,988,917 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	30,631,651 - 30,668,739 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	30,632,253 - 30,668,679 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	30,569,145 - 30,606,398 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	30,538,917 - 30,576,371 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	30,916,838 - 30,954,184 (+)	NCBI		UU_Cfam_GSD_1.0

Poc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	189,744,478 - 189,793,476 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936549	1,065,475 - 1,114,496 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936549	1,065,495 - 1,111,642 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POC5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	84,689,370 - 84,730,951 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	84,689,592 - 84,730,980 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	86,325,944 - 86,366,444 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POC5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	69,999,522 - 70,035,860 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	69,999,904 - 70,035,799 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	18,784,264 - 18,820,919 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Poc5
236 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	155
Count of miRNA genes:	119
Interacting mature miRNAs:	125
Transcripts:	ENSRNOT00000061507
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631682	Bp115	Blood pressure QTL 115	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	1	37410502	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	41244106	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	5873687	102844969	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	7887772	42804738	Rat
738012	Anxrr3	Anxiety related response QTL 3	3.8		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	2	9023519	54023519	Rat
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	11591100	56591100	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	11852062	49003364	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	16491740	61491740	Rat
1357990	Ael1	Aortic elastin QTL 1	3.1	0.00091	aorta elastin amount (VT:0003905)	aortic elastin	2	19076825	64076825	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	20304672	65304672	Rat
2300168	Bmd47	Bone mineral density QTL 47	6.6	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	2	20662448	65662448	Rat
10402051	Gdil2	Gastrointestinal dilation QTL 2			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	24903853	74786777	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	26917817	81754745	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	26917817	81754745	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	81754745	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	127469484	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26917817	136917119	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	26999571	43154682	Rat
1643006	Pain1	Pain QTL 1	3.63	0.005	mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	2	26999571	48268661	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	27157160	72157160	Rat

Markers in Region

BE121061

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	27,744,246 - 27,744,401 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	27,024,246 - 27,024,400	NCBI	Rnor6.0
Rnor_5.0	2	46,148,331 - 46,148,485	UniSTS	Rnor5.0
RGSC_v3.4	2	26,872,491 - 26,872,645	UniSTS	RGSC3.4
Celera	2	23,790,124 - 23,790,278	UniSTS
RH 3.4 Map	2	0.0	UniSTS
Cytogenetic Map	2	q12	UniSTS

RH135043

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	27,748,545 - 27,748,725 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	27,028,545 - 27,028,724	NCBI	Rnor6.0
Rnor_5.0	2	46,152,630 - 46,152,809	UniSTS	Rnor5.0
RGSC_v3.4	2	26,876,790 - 26,876,969	UniSTS	RGSC3.4
Celera	2	23,794,423 - 23,794,602	UniSTS
RH 3.4 Map	2	13.3	UniSTS
Cytogenetic Map	2	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		4	2		2				45		10
Low	3	39	55	41	17	41	8	11	29	35	31	11	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000061507 ⟹ ENSRNOP00000058225

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	27,003,783 - 27,028,559 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080864 ⟹ ENSRNOP00000075735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	27,005,863 - 27,030,754 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087418 ⟹ ENSRNOP00000070872

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	27,719,762 - 27,748,805 (+)	Ensembl
Rnor_6.0 Ensembl	2	27,000,327 - 27,028,804 (+)	Ensembl

RefSeq Acc Id:

NM_001025647 ⟹ NP_001020818

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	29,454,427 - 29,483,468 (+)	NCBI
mRatBN7.2	2	27,719,762 - 27,748,805 (+)	NCBI
Rnor_6.0	2	27,000,327 - 27,028,804 (+)	NCBI
Rnor_5.0	2	46,124,180 - 46,153,690 (+)	NCBI
RGSC_v3.4	2	26,848,282 - 26,877,049 (+)	RGD
Celera	2	23,766,449 - 23,794,682 (+)	RGD

Sequence:

show sequence

CTAGTTTGAAACTGTCAAGTGGCTGCTAGGGAAGCCGCTGTGCTTGCAGTGGTTGTGGCGGTGA
CGCCGGCTGTCGCGGCGAGTCGGGAGTCGAAGTTTGGCGGAGACGGTGACTACCGGTGGCGGGA
CCCAGGCCGGTTCCTACCAGTCAGTTTTGGGGGCATTGTCCCTGGAGGTGCCCAGAAAGAGGAC
ACAAGTGATGCAAACTAATTGAATGCATCCATGGCCGAGGGACCGGGACATACTGAGGGCTGAC
TGCTGTGTGCCCACAGCTGTTCCCAGTGCTTCAAAGTCAACCTCATGCTCACACAGCTGGCACT
GAACTCGCCGACCTTCCTCCCAGTCTCACTGGCCCACAGTCCTTGCTTCGTATTTGTACAGAAT
GTCGTCTGATGAGGACAAGTGTTCACTTCATGTTGCTCACAATGACTCTGATCGTTCAGTCTCC
ACAGACCTTCAGGAGGAATATGAAGAACTGCTTCGCTATGCTGTTGTGAACCCAAATGTTGAGT
CTGGTGTTTCACGGCCGTCTCACCTTAGAGGAGAAGCGGTACCGGACAGATTTCCTGTGCTAGG
AAGTAACCCTTTAAGAGAAACTGCACTGGAAGTTGGAAAAGGATCTGATTTAAATATTTCAAGC
CTTTCAAAATCAGGGTCACCCAGGAAGCCACCTCACCCAGTCATGGACTTTTTCGGCCCACATT
TTTTAGGTGATTCTTCCTCACCAGCCTCTATCTCTACTCGGACAGATGCCCATGAAATAATTGT
GGGTGATCATCTTGTCTCTGAGGAAAATTTTCAGAAGTTGGAGAATGTGCTTGACATCTGGAGC
TCAGGTCTTAAGACGAACATTTTATCTGAACTAAGTAAGTGGAGACTTAATTTTATTGACTGGC
ACCGAATGGAGATGAAAAAGGAAAGGGAAAAGCACGCGGTGACAGTGAAGCAGCTGTCGAGCCA
GATCGCTGACTTGAAGGAGCTGCAGAAAGCCTTCGAGATTTCCATCGGAAGAAAGGATGAGGTG
ATTTCCAGCTTGTCTCGTGCCATCGGCAAGCAGAAGGAAAGGATAGAGTTAATGAAAAGCTTCT
TCCGCTGGAGAATCGGCCATGTCAAATCCAGACAGGAAAGTTATGAGGGGAAACTGGCTGACCA
GTACTTTGAGAGAACTTTGCTGAAGAAAGTCTGGAAGGGCTGGCGCTCCGTGGTACAGAGGCAG
TGGAAAGATGTGGTGGAACGGGCGTGCCAAGCGAGGGCTGAAGAAGTGTGTGTGCAGATCTCCA
ACGATTATGAAGCCAAACTTGCTATGTTATCTTTAGCTTTGGAAAATGCAAAAGCTGAGATTCA
AAGAATGCATCAAGAAAAAGACCATTTCGAAGACTCCATGAAGAAAGCATTCATGAGGGGAGTG
TGTGCATTAAATCTGGAAGCCATGACCATATTTCAGAACAAAAATGACGCAGGGATAGACTTCA
CAAATAATAAAAAGGAAGAGAGTGGCCCTGGTGGTCCAGGAAGAGAACCTTCTGCTCACTTGGA
TACTTCTTCGTCCACAATGCCATCAGCAGTTCCGTTACAGCTGCTGCCGTCTGCAACATTAGCA
GCAGGAGTAGCCAGCGCCACTGCCATTCCCTCCACTGCTTCCCTGACCTCTGCCGGAGCTACAT
CTGCCTCTTCCGGTCACGTTCCCATCTCTGTTCTCAGTGCCGGATCTGCAGCCACGGCTGCCCC
AGAAGACACGTTTGCACCAAGAGTTGTGACTGCAGCGCAGCAGAAAGCTGGGAAGACAATTACA
GCCCGGATCACAGGACGCTGTGATTTTGGTTCCAAAACTAGAATCAACAGCAGCTTGGCTATCA
TGGGAGTTTCTCCTCCCATGAGCTCGGTCGTCGTGGAGAAACATCACCCAGTCACAGTGCAAAC
CATTCCTCAGGCGACCGCTGCCAAGTACCCACGGGCCATCCACCCTGAAAGTGGCTTCCCAGCC
TCTAGGTCTGTCGGAGCCAGGCCAGCCCACGCCCAGTCCCTCTCAAACGTTCAGTCGATAAAAG
TGGTTGACTAGAGGGACTGTGTTCACTCAGCTTTCATTCCTCTGATGAGGACTTTCCTGGGAGC
AGCAAGTATTTTGGATTTGACCTTTCTGTACTGTCAGAACATCATGGACACATTGTGTCCATCT
TTTCAGAATTACAAGAGACTTCCCCATCCTTTGTAACCATATGTATAGATTATGTTAACATTAT
TTTTATTTAAACAATTAAGTAGAACTTTTAATTAAAACAAAACAACCCATGACTCTGAACATGC
AAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039101919 ⟹ XP_038957847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	29,454,392 - 29,483,463 (+)	NCBI
mRatBN7.2	2	27,719,745 - 27,748,800 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020818	(Get FASTA)	NCBI Sequence Viewer
	XP_038957847	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97489	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070872
	ENSRNOP00000070872.1
	ENSRNOP00055039957
	ENSRNOP00060042797
	ENSRNOP00065030534
GenBank Protein	Q4V891	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020818 ⟸ NM_001025647

- UniProtKB:

Q4V891 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSSDEDKCSLHVAHNDSDRSVSTDLQEEYEELLRYAVVNPNVESGVSRPSHLRGEAVPDRFPVL
GSNPLRETALEVGKGSDLNISSLSKSGSPRKPPHPVMDFFGPHFLGDSSSPASISTRTDAHEII
VGDHLVSEENFQKLENVLDIWSSGLKTNILSELSKWRLNFIDWHRMEMKKEREKHAVTVKQLSS
QIADLKELQKAFEISIGRKDEVISSLSRAIGKQKERIELMKSFFRWRIGHVKSRQESYEGKLAD
QYFERTLLKKVWKGWRSVVQRQWKDVVERACQARAEEVCVQISNDYEAKLAMLSLALENAKAEI
QRMHQEKDHFEDSMKKAFMRGVCALNLEAMTIFQNKNDAGIDFTNNKKEESGPGGPGREPSAHL
DTSSSTMPSAVPLQLLPSATLAAGVASATAIPSTASLTSAGATSASSGHVPISVLSAGSAATAA
PEDTFAPRVVTAAQQKAGKTITARITGRCDFGSKTRINSSLAIMGVSPPMSSVVVEKHHPVTVQ
TIPQATAAKYPRAIHPESGFPASRSVGARPAHAQSLSNVQSIKVVD

hide sequence

RefSeq Acc Id:

ENSRNOP00000075735 ⟸ ENSRNOT00000080864

RefSeq Acc Id:

ENSRNOP00000058225 ⟸ ENSRNOT00000061507

RefSeq Acc Id:

ENSRNOP00000070872 ⟸ ENSRNOT00000087418

RefSeq Acc Id:	XP_038957847 ⟸ XM_039101919
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V891-F1-model_v2	AlphaFold	Q4V891	1-558	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691080

Promoter ID:

EPDNEW_R1605

Type:

multiple initiation site

Name:

Poc5_1

Description:

POC5 centriolar protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	27,000,334 - 27,000,394	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310597	AgrOrtholog
BioCyc Gene	G2FUF-54781	BioCyc
Ensembl Genes	ENSRNOG00000018193	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055028083	UniProtKB/Swiss-Prot
	ENSRNOG00060029617	UniProtKB/Swiss-Prot
	ENSRNOG00065022163	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000087418	ENTREZGENE
	ENSRNOT00000087418.2	UniProtKB/Swiss-Prot
	ENSRNOT00055048603	UniProtKB/Swiss-Prot
	ENSRNOT00060051446	UniProtKB/Swiss-Prot
	ENSRNOT00065037760	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7460568	IMAGE-MGC_LOAD
InterPro	POC5	UniProtKB/Swiss-Prot
KEGG Report	rno:294667	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114560	IMAGE-MGC_LOAD
NCBI Gene	294667	ENTREZGENE
PANTHER	CENTROSOMAL PROTEIN POC5	UniProtKB/Swiss-Prot
	PTHR28618	UniProtKB/Swiss-Prot
PhenoGen	Poc5	PhenoGen
RatGTEx	ENSRNOG00000018193	RatGTEx
	ENSRNOG00055028083	RatGTEx
	ENSRNOG00060029617	RatGTEx
	ENSRNOG00065022163	RatGTEx
UniProt	POC5_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-14	Poc5	POC5 centriolar protein	Poc5	POC5 centriolar protein homolog (Chlamydomonas)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-05-25	Poc5	POC5 centriolar protein homolog (Chlamydomonas)	RGD1310597	similar to RIKEN cDNA 1200014M14	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1310597	similar to RIKEN cDNA 1200014M14	RGD1310597_predicted	similar to RIKEN cDNA 1200014M14 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310597_predicted	similar to RIKEN cDNA 1200014M14 (predicted)	LOC294667_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC294667_predicted	similar to RIKEN cDNA 1200014M14 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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