Poc5 (POC5 centriolar protein) - Rat Genome Database

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Gene: Poc5 (POC5 centriolar protein) Mus musculus
Analyze
Symbol: Poc5
Name: POC5 centriolar protein
RGD ID: 1331935
MGI Page MGI
Description: Predicted to be involved in eye photoreceptor cell development. Predicted to be located in centrosome; cytosol; and nucleoplasm. Predicted to be active in photoreceptor connecting cilium. Is expressed in central nervous system; ganglia; and sensory organ. Orthologous to human POC5 (POC5 centriolar protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1200014M14Rik; AV144706; centrosomal protein POC5; POC5 centriolar protein homolog; protein of centriole 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18987  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391396,524,767 - 96,553,719 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1396,524,802 - 96,554,245 (+)EnsemblGRCm39 Ensembl
GRCm381396,388,259 - 96,417,211 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1396,388,294 - 96,417,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv371397,158,249 - 97,185,542 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361397,489,065 - 97,516,268 (+)NCBIMGSCv36mm8
Celera13100,020,144 - 100,049,493 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:11591653   PMID:12466851   PMID:12477932   PMID:12520002   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:30418981   PMID:38355793  


Genomics

Comparative Map Data
Poc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391396,524,767 - 96,553,719 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1396,524,802 - 96,554,245 (+)EnsemblGRCm39 Ensembl
GRCm381396,388,259 - 96,417,211 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1396,388,294 - 96,417,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv371397,158,249 - 97,185,542 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361397,489,065 - 97,516,268 (+)NCBIMGSCv36mm8
Celera13100,020,144 - 100,049,493 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.56NCBI
POC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38575,674,124 - 75,717,437 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl575,674,124 - 75,717,448 (-)EnsemblGRCh38hg38GRCh38
GRCh37574,969,949 - 75,013,262 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36575,005,779 - 75,049,069 (-)NCBINCBI36Build 36hg18NCBI36
Celera570,863,433 - 70,906,720 (-)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef570,175,062 - 70,218,349 (-)NCBIHuRef
CHM1_1574,402,737 - 74,446,028 (-)NCBICHM1_1
T2T-CHM13v2.0576,155,204 - 76,198,513 (-)NCBIT2T-CHM13v2.0
Poc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8229,454,392 - 29,483,468 (+)NCBIGRCr8
mRatBN7.2227,719,745 - 27,748,805 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl227,719,762 - 27,748,805 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx234,766,108 - 34,796,050 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0232,866,193 - 32,896,136 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0227,676,683 - 27,707,445 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0227,000,303 - 27,030,646 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl227,000,327 - 27,030,754 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0246,124,180 - 46,153,690 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4226,848,282 - 26,877,049 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1226,768,650 - 26,797,418 (+)NCBI
Celera223,766,449 - 23,794,682 (+)NCBICelera
Cytogenetic Map2q12NCBI
Poc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542525,050,552 - 25,091,569 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542525,055,259 - 25,092,101 (+)NCBIChiLan1.0ChiLan1.0
POC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2439,588,724 - 39,632,327 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1537,742,354 - 37,789,011 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0539,587,659 - 39,631,472 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1540,201,170 - 40,244,189 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl540,205,697 - 40,244,182 (+)Ensemblpanpan1.1panPan2
POC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1330,708,451 - 30,745,754 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl330,709,101 - 30,745,550 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha331,951,937 - 31,988,917 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0330,631,651 - 30,668,739 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl330,632,253 - 30,668,679 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1330,569,145 - 30,606,398 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0330,538,917 - 30,576,371 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0330,916,838 - 30,954,184 (+)NCBIUU_Cfam_GSD_1.0
Poc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213189,744,478 - 189,793,476 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365491,065,475 - 1,114,496 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365491,065,495 - 1,111,642 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl284,689,370 - 84,730,951 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1284,689,592 - 84,730,980 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2286,325,944 - 86,366,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1469,999,522 - 70,035,860 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl469,999,904 - 70,035,799 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604918,784,264 - 18,820,919 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Poc5
963 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:275
Count of miRNA genes:233
Interacting mature miRNAs:246
Transcripts:ENSMUST00000099295
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
12880402Emlq1_memotional learning QTL 1 (mouse)137810885896866553Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse

Markers in Region
UniSTS:237084  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381396,415,066 - 96,415,294UniSTSGRCm38
MGSCv371397,185,021 - 97,185,249UniSTSGRCm37
Celera13100,048,972 - 100,049,200UniSTS
Cytogenetic Map13D1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000099295   ⟹   ENSMUSP00000096898
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,524,802 - 96,554,245 (+)Ensembl
GRCm38.p6 Ensembl1396,388,294 - 96,417,737 (+)Ensembl
Ensembl Acc Id: ENSMUST00000221039
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,524,868 - 96,536,224 (+)Ensembl
GRCm38.p6 Ensembl1396,388,360 - 96,399,716 (+)Ensembl
Ensembl Acc Id: ENSMUST00000222640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,529,733 - 96,538,206 (+)Ensembl
GRCm38.p6 Ensembl1396,393,225 - 96,401,698 (+)Ensembl
Ensembl Acc Id: ENSMUST00000222792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,551,041 - 96,553,694 (+)Ensembl
GRCm38.p6 Ensembl1396,414,533 - 96,417,186 (+)Ensembl
Ensembl Acc Id: ENSMUST00000223478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,541,011 - 96,547,196 (+)Ensembl
GRCm38.p6 Ensembl1396,404,503 - 96,410,688 (+)Ensembl
RefSeq Acc Id: NM_026173   ⟹   NP_080449
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391396,524,802 - 96,552,095 (+)NCBI
GRCm381396,388,294 - 96,415,587 (+)NCBI
MGSCv371397,158,249 - 97,185,542 (+)RGD
Celera13100,020,144 - 100,049,493 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517751   ⟹   XP_006517814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391396,524,807 - 96,553,696 (+)NCBI
GRCm381396,388,299 - 96,417,211 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001780803
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391396,524,767 - 96,553,719 (+)NCBI
GRCm381396,388,259 - 96,414,836 (+)NCBI
Sequence:
RefSeq Acc Id: NP_080449   ⟸   NM_026173
- UniProtKB: Q8CI36 (UniProtKB/Swiss-Prot),   Q8C299 (UniProtKB/Swiss-Prot),   Q9CZ74 (UniProtKB/Swiss-Prot),   Q9DBS8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006517814   ⟸   XM_006517751
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000096898   ⟸   ENSMUST00000099295

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DBS8-F1-model_v2 AlphaFold Q9DBS8 1-558 view protein structure

Promoters
RGD ID:8681064
Promoter ID:EPDNEW_M18563
Type:initiation region
Name:Poc5_1
Description:Mus musculus POC5 centriolar protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381396,388,323 - 96,388,383EPDNEW
RGD ID:6823541
Promoter ID:MM_KWN:14971
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_026173,   UC007RMV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361397,158,026 - 97,158,526 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914713 AgrOrtholog
Ensembl Genes ENSMUSG00000021671 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000099295 ENTREZGENE
  ENSMUST00000099295.6 UniProtKB/Swiss-Prot
InterPro POC5 UniProtKB/Swiss-Prot
KEGG Report mmu:67463 UniProtKB/Swiss-Prot
MGD MGI:1914713 ENTREZGENE
NCBI Gene 67463 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN POC5 UniProtKB/Swiss-Prot
  PTHR28618 UniProtKB/Swiss-Prot
PhenoGen Poc5 PhenoGen
UniProt POC5_MOUSE UniProtKB/Swiss-Prot
  Q8C299 ENTREZGENE
  Q8CI36 ENTREZGENE
  Q9CZ74 ENTREZGENE
  Q9DBS8 ENTREZGENE
UniProt Secondary Q8C299 UniProtKB/Swiss-Prot
  Q8CI36 UniProtKB/Swiss-Prot
  Q9CZ74 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-02 Poc5  POC5 centriolar protein    POC5 centriolar protein homolog (Chlamydomonas)  Symbol and/or name change 5135510 APPROVED
2011-07-27 Poc5  POC5 centriolar protein homolog (Chlamydomonas)  1200014M14Rik  RIKEN cDNA 1200014M14 gene  Symbol and/or name change 5135510 APPROVED