Chst11 (carbohydrate sulfotransferase 11) - Rat Genome Database

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Gene: Chst11 (carbohydrate sulfotransferase 11) Rattus norvegicus
Analyze
Symbol: Chst11
Name: carbohydrate sulfotransferase 11
RGD ID: 1308400
Description: Predicted to enable N-acetylgalactosamine 4-O-sulfotransferase activity; N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity; and chondroitin 4-sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to act upstream of or within several processes, including chondroitin sulfate biosynthetic process; post-anal tail morphogenesis; and skeletal system development. Predicted to be located in Golgi membrane. Orthologous to human CHST11 (carbohydrate sulfotransferase 11); PARTICIPATES IN sulfite oxidase deficiency pathway; chondroitin sulfate biosynthetic pathway; sulfur metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C4S-1; C4ST; C4ST-1; C4ST1; carbohydrate (chondroitin 4) sulfotransferase 11; chondroitin 4-O-sulfotransferase 1; chondroitin 4-sulfotransferase 1; LOC314694
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,412,121 - 22,630,577 (-)NCBIGRCr8
mRatBN7.2720,524,535 - 20,743,008 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,528,100 - 20,743,111 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx722,492,350 - 22,707,381 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,655,107 - 24,870,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,432,117 - 24,647,158 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,641,856 - 26,890,503 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,645,422 - 26,859,716 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0726,767,389 - 26,981,343 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4722,721,892 - 22,950,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1722,742,162 - 22,970,357 (-)NCBI
Celera717,709,216 - 17,922,331 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-palmitoylglycerol  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
Azoxymethane  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
epichlorohydrin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hexaconazole  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
Thrombin  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10722746   PMID:11056388   PMID:15057822   PMID:16079159   PMID:19946888   PMID:21138417   PMID:27996060  


Genomics

Comparative Map Data
Chst11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,412,121 - 22,630,577 (-)NCBIGRCr8
mRatBN7.2720,524,535 - 20,743,008 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,528,100 - 20,743,111 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx722,492,350 - 22,707,381 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,655,107 - 24,870,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,432,117 - 24,647,158 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,641,856 - 26,890,503 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,645,422 - 26,859,716 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0726,767,389 - 26,981,343 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4722,721,892 - 22,950,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1722,742,162 - 22,970,357 (-)NCBI
Celera717,709,216 - 17,922,331 (-)NCBICelera
Cytogenetic Map7q13NCBI
CHST11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812104,456,948 - 104,762,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12104,455,295 - 104,762,014 (+)EnsemblGRCh38hg38GRCh38
GRCh3712104,850,726 - 105,155,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,370,614 - 103,676,013 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412103,353,244 - 103,654,350NCBI
Celera12104,515,392 - 104,820,429 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12101,909,453 - 102,214,785 (+)NCBIHuRef
CHM1_112104,816,552 - 105,121,568 (+)NCBICHM1_1
T2T-CHM13v2.012104,418,595 - 104,723,625 (+)NCBIT2T-CHM13v2.0
Chst11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,820,274 - 83,031,738 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1082,821,332 - 83,031,734 (+)EnsemblGRCm39 Ensembl
GRCm381082,984,440 - 83,195,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,985,498 - 83,195,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371082,448,242 - 82,658,645 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,415,296 - 82,625,699 (+)NCBIMGSCv36mm8
Celera1084,972,909 - 85,183,903 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1040.66NCBI
Chst11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,985,046 - 39,139,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,985,046 - 39,134,130 (+)NCBIChiLan1.0ChiLan1.0
CHST11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210112,522,706 - 112,827,867 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112112,518,967 - 112,824,262 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012102,035,480 - 102,340,084 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112105,730,321 - 105,735,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,431,075 - 105,731,172 (+)Ensemblpanpan1.1panPan2
CHST11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,555,629 - 33,810,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,555,628 - 33,810,558 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1033,472,156 - 33,730,826 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01034,395,250 - 34,654,055 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1034,398,784 - 34,654,634 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11034,130,242 - 34,389,255 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01034,413,800 - 34,672,705 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01034,607,391 - 34,867,023 (-)NCBIUU_Cfam_GSD_1.0
Chst11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,875,838 - 17,082,355 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364929,886,254 - 10,092,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364929,886,269 - 10,092,725 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,788,572 - 80,067,795 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1579,788,558 - 80,068,903 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2583,185,065 - 83,190,211 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHST11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,662,890 - 99,982,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1199,665,290 - 99,981,977 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037145,029,522 - 145,339,512 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chst11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247504,223,561 - 4,391,218 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247504,227,229 - 4,391,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chst11
2457 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:60
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000012017
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat

Markers in Region
D7Wox26  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,712,075 - 20,712,261 (+)MAPPERmRatBN7.2
Rnor_6.0726,828,923 - 26,829,108NCBIRnor6.0
Rnor_5.0726,950,426 - 26,950,611UniSTSRnor5.0
RGSC_v3.4722,919,372 - 22,919,557UniSTSRGSC3.4
RGSC_v3.4722,919,371 - 22,919,557RGDRGSC3.4
RGSC_v3.1722,939,643 - 22,939,828RGD
Celera717,891,175 - 17,891,360UniSTS
RH 3.4 Map7118.5UniSTS
RH 3.4 Map7118.5RGD
RH 2.0 Map7115.1RGD
Cytogenetic Map7q13UniSTS
D7Cebr2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,582,703 - 20,582,936 (+)MAPPERmRatBN7.2
Rnor_6.0726,699,150 - 26,699,382NCBIRnor6.0
Rnor_5.0726,822,613 - 26,822,845UniSTSRnor5.0
RGSC_v3.4722,787,519 - 22,787,751UniSTSRGSC3.4
Celera717,763,327 - 17,763,559UniSTS
Cytogenetic Map7q13UniSTS
BF393168  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,585,380 - 20,585,531 (+)MAPPERmRatBN7.2
Rnor_6.0726,701,827 - 26,701,977NCBIRnor6.0
Rnor_5.0726,825,290 - 26,825,440UniSTSRnor5.0
RGSC_v3.4722,790,196 - 22,790,346UniSTSRGSC3.4
Celera717,766,004 - 17,766,154UniSTS
RH 3.4 Map7121.1UniSTS
Cytogenetic Map7q13UniSTS
BF399916  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,587,968 - 20,588,184 (+)MAPPERmRatBN7.2
Rnor_6.0726,704,396 - 26,704,611NCBIRnor6.0
Rnor_5.0726,827,340 - 26,827,555UniSTSRnor5.0
RGSC_v3.4722,792,958 - 22,793,173UniSTSRGSC3.4
Celera717,768,681 - 17,768,896UniSTS
RH 3.4 Map7115.95UniSTS
Cytogenetic Map7q13UniSTS
UniSTS:532265  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,528,760 - 20,528,901 (+)MAPPERmRatBN7.2
Rnor_6.0726,646,083 - 26,646,223NCBIRnor6.0
Rnor_5.0726,771,616 - 26,771,756UniSTSRnor5.0
Celera717,709,877 - 17,710,017UniSTS
Cytogenetic Map7q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 90 89 58 25 58 6 217 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000012017   ⟹   ENSRNOP00000012017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl720,528,100 - 20,743,111 (-)Ensembl
Rnor_6.0 Ensembl726,645,422 - 26,859,716 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087536   ⟹   ENSRNOP00000073810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl726,645,970 - 26,690,323 (-)Ensembl
RefSeq Acc Id: NM_001108079   ⟹   NP_001101549
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,415,686 - 22,630,441 (-)NCBI
mRatBN7.2720,528,100 - 20,742,861 (-)NCBI
Rnor_6.0726,645,422 - 26,859,716 (-)NCBI
Rnor_5.0726,767,389 - 26,981,343 (-)NCBI
RGSC_v3.4722,721,892 - 22,950,084 (-)RGD
Celera717,709,216 - 17,922,331 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241200   ⟹   XP_006241262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,412,121 - 22,630,577 (-)NCBI
mRatBN7.2720,524,535 - 20,743,008 (-)NCBI
Rnor_6.0726,641,856 - 26,861,124 (-)NCBI
Rnor_5.0726,767,389 - 26,981,343 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079035   ⟹   XP_038934963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,412,121 - 22,526,501 (-)NCBI
mRatBN7.2720,524,535 - 20,641,363 (-)NCBI
RefSeq Acc Id: XM_039079036   ⟹   XP_038934964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,412,121 - 22,461,783 (-)NCBI
mRatBN7.2720,524,535 - 20,574,208 (-)NCBI
RefSeq Acc Id: XM_063263437   ⟹   XP_063119507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,412,121 - 22,578,775 (-)NCBI
RefSeq Acc Id: NP_001101549   ⟸   NM_001108079
- UniProtKB: P69478 (UniProtKB/Swiss-Prot),   A6IFH2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241262   ⟸   XM_006241200
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q5L8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073810   ⟸   ENSRNOT00000087536
Ensembl Acc Id: ENSRNOP00000012017   ⟸   ENSRNOT00000012017
RefSeq Acc Id: XP_038934963   ⟸   XM_039079035
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038934964   ⟸   XM_039079036
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063119507   ⟸   XM_063263437
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P69478-F1-model_v2 AlphaFold P69478 1-352 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695109
Promoter ID:EPDNEW_R5634
Type:initiation region
Name:Chst11_1
Description:carbohydrate sulfotransferase 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0726,859,728 - 26,859,788EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308400 AgrOrtholog
BioCyc Gene G2FUF-34577 BioCyc
BioCyc Pathway PWY-6567 [chondroitin sulfate biosynthesis] BioCyc
BioCyc Pathway Image PWY-6567 BioCyc
Ensembl Genes ENSRNOG00000008885 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055020297 UniProtKB/Swiss-Prot
  ENSRNOG00060027973 UniProtKB/Swiss-Prot
  ENSRNOG00065021745 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000012017.6 UniProtKB/TrEMBL
  ENSRNOT00055034660 UniProtKB/Swiss-Prot
  ENSRNOT00060048565 UniProtKB/Swiss-Prot
  ENSRNOT00065036966 UniProtKB/Swiss-Prot
InterPro Carb_sulfotrans_8-10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:314694 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 314694 ENTREZGENE
PANTHER CARBOHYDRATE SULFOTRANSFERASE 11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12137 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chst11 PhenoGen
RatGTEx ENSRNOG00000008885 RatGTEx
  ENSRNOG00055020297 RatGTEx
  ENSRNOG00060027973 RatGTEx
  ENSRNOG00065021745 RatGTEx
UniProt A0A8L2Q5L8 ENTREZGENE, UniProtKB/TrEMBL
  A6IFH2 ENTREZGENE, UniProtKB/TrEMBL
  CHSTB_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-18 Chst11  carbohydrate sulfotransferase 11  Chst11  carbohydrate (chondroitin 4) sulfotransferase 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-02-04 Chst11  carbohydrate (chondroitin 4) sulfotransferase 11  Chst11  carbohydrate sulfotransferase 11   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Chst11  carbohydrate sulfotransferase 11   Chst11_predicted  carbohydrate sulfotransferase 11 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Chst11_predicted  carbohydrate sulfotransferase 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED