Chst11 (carbohydrate sulfotransferase 11) - Rat Genome Database

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Gene: Chst11 (carbohydrate sulfotransferase 11) Chinchilla lanigera
Analyze
Symbol: Chst11
Name: carbohydrate sulfotransferase 11
RGD ID: 9017643
Description: ENCODES a protein that exhibits chondroitin 4-sulfotransferase activity (ortholog); N-acetylgalactosamine 4-O-sulfotransferase activity (ortholog); N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity (ortholog); INVOLVED IN apoptotic process (ortholog); cartilage development (ortholog); chondrocyte development (ortholog); PARTICIPATES IN sulfite oxidase deficiency pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); brachydactyly (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: carbohydrate (chondroitin 4) sulfotransferase 11
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,985,046 - 39,139,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,985,046 - 39,134,130 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Chst11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,985,046 - 39,139,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,985,046 - 39,134,130 (+)NCBIChiLan1.0ChiLan1.0
CHST11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812104,456,948 - 104,762,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12104,455,295 - 104,762,014 (+)EnsemblGRCh38hg38GRCh38
GRCh3712104,850,726 - 105,155,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,370,614 - 103,676,013 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412103,353,244 - 103,654,350NCBI
Celera12104,515,392 - 104,820,429 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12101,909,453 - 102,214,785 (+)NCBIHuRef
CHM1_112104,816,552 - 105,121,568 (+)NCBICHM1_1
T2T-CHM13v2.012104,418,595 - 104,723,625 (+)NCBIT2T-CHM13v2.0
Chst11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,820,274 - 83,031,738 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1082,821,332 - 83,031,734 (+)EnsemblGRCm39 Ensembl
GRCm381082,984,440 - 83,195,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,985,498 - 83,195,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371082,448,242 - 82,658,645 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,415,296 - 82,625,699 (+)NCBIMGSCv36mm8
Celera1084,972,909 - 85,183,903 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1040.66NCBI
Chst11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,412,121 - 22,630,577 (-)NCBIGRCr8
mRatBN7.2720,524,535 - 20,743,008 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,528,100 - 20,743,111 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx722,492,350 - 22,707,381 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,655,107 - 24,870,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,432,117 - 24,647,158 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,641,856 - 26,890,503 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,645,422 - 26,859,716 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0726,767,389 - 26,981,343 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4722,721,892 - 22,950,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1722,742,162 - 22,970,357 (-)NCBI
Celera717,709,216 - 17,922,331 (-)NCBICelera
Cytogenetic Map7q13NCBI
CHST11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210112,522,706 - 112,827,867 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112112,518,967 - 112,824,262 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012102,035,480 - 102,340,084 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112105,730,321 - 105,735,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,431,075 - 105,731,172 (+)Ensemblpanpan1.1panPan2
CHST11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,555,629 - 33,810,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,555,628 - 33,810,558 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1033,472,156 - 33,730,826 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01034,395,250 - 34,654,055 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1034,398,784 - 34,654,634 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11034,130,242 - 34,389,255 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01034,413,800 - 34,672,705 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01034,607,391 - 34,867,023 (-)NCBIUU_Cfam_GSD_1.0
Chst11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,875,838 - 17,082,355 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364929,886,254 - 10,092,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364929,886,269 - 10,092,725 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,788,572 - 80,067,795 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1579,788,558 - 80,068,903 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2583,185,065 - 83,190,211 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHST11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,662,890 - 99,982,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1199,665,290 - 99,981,977 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037145,029,522 - 145,339,512 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chst11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247504,223,561 - 4,391,218 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247504,227,229 - 4,391,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000010814   ⟹   ENSCLAP00000010682
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540538,985,046 - 39,139,021 (+)Ensembl
RefSeq Acc Id: XM_005374594   ⟹   XP_005374651
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540538,985,046 - 39,134,130 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374595   ⟹   XP_005374652
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540538,985,046 - 39,134,130 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374651 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374652 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010682
  ENSCLAP00000010682.1
RefSeq Acc Id: XP_005374651   ⟸   XM_005374594
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V6D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374652   ⟸   XM_005374595
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000010682   ⟸   ENSCLAT00000010814


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007370 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010814 ENTREZGENE
  ENSCLAT00000010814.1 UniProtKB/TrEMBL
InterPro Carb_sulfotrans_8-10 UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/TrEMBL
NCBI Gene Chst11 ENTREZGENE
PANTHER CARBOHYDRATE SULFOTRANSFERASE 11 UniProtKB/TrEMBL
  PTHR12137 UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/TrEMBL
UniProt A0A8C2V6D4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-09 Chst11  carbohydrate sulfotransferase 11    carbohydrate (chondroitin 4) sulfotransferase 11  Symbol and/or name change 5135510 APPROVED