CHST11 (carbohydrate sulfotransferase 11) - Rat Genome Database

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Gene: CHST11 (carbohydrate sulfotransferase 11) Homo sapiens
Analyze
Symbol: CHST11
Name: carbohydrate sulfotransferase 11
RGD ID: 1318147
HGNC Page HGNC
Description: Exhibits N-acetylgalactosamine 4-O-sulfotransferase activity and chondroitin 4-sulfotransferase activity. Involved in chondroitin sulfate biosynthetic process. Localizes to membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: C4S-1; C4ST; C4ST-1; C4ST1; carbohydrate (chondroitin 4) sulfotransferase 11; chondroitin 4-O-sulfotransferase 1; chondroitin 4-sulfotransferase 1; DKFZp667A035; FLJ41682; HSA269537; IgH/CHST11 fusion; OCBMD
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12104,455,295 - 104,762,014 (+)EnsemblGRCh38hg38GRCh38
GRCh3812104,456,948 - 104,762,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712104,850,726 - 105,155,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,370,614 - 103,676,013 (+)NCBINCBI36hg18NCBI36
Build 3412103,353,244 - 103,654,350NCBI
Celera12104,515,392 - 104,820,429 (+)NCBI
Cytogenetic Map12q23.3NCBI
HuRef12101,909,453 - 102,214,785 (+)NCBIHuRef
CHM1_112104,816,552 - 105,121,568 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

Additional References at PubMed
PMID:8619474   PMID:9110174   PMID:10722746   PMID:10737800   PMID:10781601   PMID:11056388   PMID:12477932   PMID:12847091   PMID:14702039   PMID:15273723   PMID:15324304   PMID:15489334  
PMID:15628971   PMID:16260042   PMID:16344560   PMID:17207965   PMID:19240061   PMID:19937589   PMID:19946888   PMID:20080650   PMID:20379614   PMID:20580388   PMID:21123170   PMID:21658254  
PMID:21668797   PMID:21873635   PMID:22317973   PMID:23251661   PMID:24709693   PMID:25511584   PMID:25586191   PMID:26084610   PMID:26186194   PMID:26760575   PMID:26993826   PMID:27391021  
PMID:28514442   PMID:28611215   PMID:28761999   PMID:29117863   PMID:29507755   PMID:29514872   PMID:30021884   PMID:32171335   PMID:32344408  


Genomics

Comparative Map Data
CHST11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12104,455,295 - 104,762,014 (+)EnsemblGRCh38hg38GRCh38
GRCh3812104,456,948 - 104,762,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712104,850,726 - 105,155,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,370,614 - 103,676,013 (+)NCBINCBI36hg18NCBI36
Build 3412103,353,244 - 103,654,350NCBI
Celera12104,515,392 - 104,820,429 (+)NCBI
Cytogenetic Map12q23.3NCBI
HuRef12101,909,453 - 102,214,785 (+)NCBIHuRef
CHM1_112104,816,552 - 105,121,568 (+)NCBICHM1_1
Chst11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,820,274 - 83,031,738 (+)NCBIGRCm39mm39
GRCm39 Ensembl1082,821,332 - 83,031,734 (+)Ensembl
GRCm381082,984,440 - 83,195,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,985,498 - 83,195,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371082,448,242 - 82,658,645 (+)NCBIGRCm37mm9NCBIm37
MGSCv361082,415,296 - 82,625,699 (+)NCBImm8
Celera1084,972,909 - 85,183,903 (+)NCBICelera
Cytogenetic Map10C1NCBI
Chst11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2720,524,535 - 20,743,008 (-)NCBI
Rnor_6.0 Ensembl726,645,422 - 26,859,716 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0726,641,856 - 26,890,503 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0726,767,389 - 26,981,343 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4722,721,892 - 22,950,084 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1722,742,162 - 22,970,357 (-)NCBI
Celera717,709,216 - 17,922,331 (-)NCBICelera
Cytogenetic Map7q13NCBI
Chst11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,985,046 - 39,139,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,985,046 - 39,134,130 (+)NCBIChiLan1.0ChiLan1.0
CHST11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112105,730,321 - 105,735,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,431,075 - 105,731,172 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012102,035,480 - 102,340,084 (+)NCBIMhudiblu_PPA_v0panPan3
CHST11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,555,629 - 33,810,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,555,628 - 33,810,558 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1033,472,156 - 33,730,826 (-)NCBI
ROS_Cfam_1.01034,395,250 - 34,654,055 (-)NCBI
UMICH_Zoey_3.11034,130,242 - 34,389,255 (-)NCBI
UNSW_CanFamBas_1.01034,413,800 - 34,672,705 (-)NCBI
UU_Cfam_GSD_1.01034,607,391 - 34,867,023 (-)NCBI
Chst11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,875,838 - 17,082,355 (-)NCBI
SpeTri2.0NW_0049364929,886,269 - 10,092,725 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,787,995 - 80,067,816 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1579,788,558 - 80,068,903 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2583,185,065 - 83,190,211 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHST11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,662,890 - 99,982,276 (+)NCBI
ChlSab1.1 Ensembl1199,665,290 - 99,981,977 (+)Ensembl
Vero_WHO_p1.0NW_023666037145,029,522 - 145,339,512 (-)NCBI
Chst11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247504,227,229 - 4,391,177 (-)NCBI

Position Markers
D12S1647  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,089,160 - 105,089,352UniSTSGRCh37
Build 3612103,613,290 - 103,613,482RGDNCBI36
Celera12104,753,806 - 104,753,996RGD
Cytogenetic Map12qUniSTS
HuRef12102,148,143 - 102,148,329UniSTS
Marshfield Genetic Map12114.28RGD
Marshfield Genetic Map12114.28UniSTS
Genethon Genetic Map12115.5UniSTS
deCODE Assembly Map12117.32UniSTS
Whitehead-YAC Contig Map12 UniSTS
RH101978  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,040,896 - 105,041,025UniSTSGRCh37
Build 3612103,565,026 - 103,565,155RGDNCBI36
Celera12104,705,530 - 104,705,659RGD
Cytogenetic Map12qUniSTS
HuRef12102,099,873 - 102,100,002UniSTS
GeneMap99-GB4 RH Map12413.25UniSTS
SHGC-64736  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,153,923 - 105,154,022UniSTSGRCh37
Build 3612103,678,053 - 103,678,152RGDNCBI36
Celera12104,818,566 - 104,818,665RGD
Cytogenetic Map12qUniSTS
HuRef12102,212,914 - 102,213,013UniSTS
TNG Radiation Hybrid Map1249438.0UniSTS
SHGC-79931  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712104,853,344 - 104,853,634UniSTSGRCh37
Build 3612103,377,474 - 103,377,764RGDNCBI36
Celera12104,518,044 - 104,518,334RGD
Cytogenetic Map12qUniSTS
HuRef12101,912,106 - 101,912,396UniSTS
TNG Radiation Hybrid Map1249280.0UniSTS
G49574  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712104,887,595 - 104,887,685UniSTSGRCh37
Build 3612103,411,725 - 103,411,815RGDNCBI36
Celera12104,552,290 - 104,552,380RGD
Cytogenetic Map12qUniSTS
HuRef12101,946,342 - 101,946,432UniSTS
TNG Radiation Hybrid Map1249302.0UniSTS
G64600  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712104,978,743 - 104,979,025UniSTSGRCh37
Build 3612103,502,873 - 103,503,155RGDNCBI36
Celera12104,643,380 - 104,643,662RGD
Cytogenetic Map12qUniSTS
HuRef12102,037,503 - 102,037,785UniSTS
G64840  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,029,409 - 105,029,608UniSTSGRCh37
Build 3612103,553,539 - 103,553,738RGDNCBI36
Celera12104,694,060 - 104,694,259RGD
Cytogenetic Map12qUniSTS
HuRef12102,088,399 - 102,088,598UniSTS
SHGC-105583  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,029,416 - 105,029,699UniSTSGRCh37
Build 3612103,553,546 - 103,553,829RGDNCBI36
Celera12104,694,067 - 104,694,350RGD
Cytogenetic Map12qUniSTS
HuRef12102,088,406 - 102,088,689UniSTS
TNG Radiation Hybrid Map1249368.0UniSTS
SHGC-106247  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,025,022 - 105,025,360UniSTSGRCh37
Build 3612103,549,152 - 103,549,490RGDNCBI36
Celera12104,689,672 - 104,690,010RGD
Cytogenetic Map12qUniSTS
HuRef12102,084,012 - 102,084,350UniSTS
TNG Radiation Hybrid Map1249379.0UniSTS
SHGC-149540  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712104,875,599 - 104,875,933UniSTSGRCh37
Build 3612103,399,729 - 103,400,063RGDNCBI36
Celera12104,540,295 - 104,540,629RGD
Cytogenetic Map12qUniSTS
HuRef12101,934,347 - 101,934,681UniSTS
TNG Radiation Hybrid Map1241752.0UniSTS
SHGC-155530  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,149,870 - 105,150,199UniSTSGRCh37
Build 3612103,674,000 - 103,674,329RGDNCBI36
Celera12104,814,513 - 104,814,842RGD
Cytogenetic Map12qUniSTS
HuRef12102,208,859 - 102,209,188UniSTS
TNG Radiation Hybrid Map1249438.0UniSTS
SHGC-155531  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,148,019 - 105,148,368UniSTSGRCh37
Build 3612103,672,149 - 103,672,498RGDNCBI36
Celera12104,812,662 - 104,813,011RGD
Cytogenetic Map12qUniSTS
HuRef12102,207,008 - 102,207,357UniSTS
TNG Radiation Hybrid Map1249438.0UniSTS
D12S1075  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,077,958 - 105,078,154UniSTSGRCh37
Build 3612103,602,088 - 103,602,284RGDNCBI36
Celera12104,742,594 - 104,742,790RGD
Cytogenetic Map12qUniSTS
HuRef12102,136,938 - 102,137,126UniSTS
Marshfield Genetic Map12116.08UniSTS
Whitehead-YAC Contig Map12 UniSTS
SHGC-17242  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,020,210 - 105,020,342UniSTSGRCh37
Build 3612103,544,340 - 103,544,472RGDNCBI36
Celera12104,684,860 - 104,684,992RGD
Cytogenetic Map12qUniSTS
HuRef12102,079,197 - 102,079,329UniSTS
Stanford-G3 RH Map124421.0UniSTS
GeneMap99-G3 RH Map124367.0UniSTS
RH70385  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,154,357 - 105,154,518UniSTSGRCh37
Build 3612103,678,487 - 103,678,648RGDNCBI36
Celera12104,819,000 - 104,819,161RGD
Cytogenetic Map12qUniSTS
HuRef12102,213,348 - 102,213,509UniSTS
GeneMap99-GB4 RH Map12417.83UniSTS
WI-18674  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,155,643 - 105,155,761UniSTSGRCh37
Build 3612103,679,773 - 103,679,891RGDNCBI36
Celera12104,820,280 - 104,820,398RGD
Cytogenetic Map12qUniSTS
HuRef12102,214,636 - 102,214,754UniSTS
GeneMap99-GB4 RH Map12417.93UniSTS
Whitehead-RH Map12514.6UniSTS
NCBI RH Map12691.0UniSTS
WI-16091  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,155,639 - 105,155,762UniSTSGRCh37
Build 3612103,679,769 - 103,679,892RGDNCBI36
Celera12104,820,276 - 104,820,399RGD
Cytogenetic Map12qUniSTS
HuRef12102,214,632 - 102,214,755UniSTS
GeneMap99-GB4 RH Map12420.36UniSTS
Whitehead-RH Map12510.9UniSTS
RH15762  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12qUniSTS
HuRef12102,214,527 - 102,214,705UniSTS
GeneMap99-GB4 RH Map12415.61UniSTS
WI-15690  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12qUniSTS
HuRef12102,214,630 - 102,214,754UniSTS
GeneMap99-GB4 RH Map12421.8UniSTS
Whitehead-RH Map12513.0UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4199
Count of miRNA genes:1157
Interacting mature miRNAs:1436
Transcripts:ENST00000303694, ENST00000546689, ENST00000547956, ENST00000549016, ENST00000549260, ENST00000550711
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 245 1328 326 39 1652 43 462 39 840 140 476 825 9 169 148 2
Low 2130 1625 1359 545 290 382 3450 1670 2891 277 980 778 164 1 1035 2199 3 2
Below cutoff 31 38 40 39 7 39 444 487 3 2 4 8 2 441

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001173982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB042326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC010191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC073917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC079316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC126473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF131762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF239820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ269537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ289134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY533204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY533205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA853534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF455715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF455717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000303694   ⟹   ENSP00000305725
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl12104,456,948 - 104,762,014 (+)Ensembl
RefSeq Acc Id: ENST00000546689   ⟹   ENSP00000448678
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl12104,457,001 - 104,602,147 (+)Ensembl
RefSeq Acc Id: ENST00000547956   ⟹   ENSP00000449093
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl12104,456,968 - 104,602,279 (+)Ensembl
RefSeq Acc Id: ENST00000549016   ⟹   ENSP00000449095
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl12104,588,848 - 104,757,339 (+)Ensembl
RefSeq Acc Id: ENST00000549260   ⟹   ENSP00000450004
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl12104,456,971 - 104,762,014 (+)Ensembl
RefSeq Acc Id: ENST00000550711
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl12104,455,295 - 104,456,996 (+)Ensembl
RefSeq Acc Id: NM_001173982   ⟹   NP_001167453
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,456,948 - 104,762,014 (+)NCBI
GRCh3712104,850,692 - 105,155,792 (+)ENTREZGENE
HuRef12101,909,453 - 102,214,785 (+)ENTREZGENE
CHM1_112104,816,552 - 105,121,568 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018413   ⟹   NP_060883
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,456,948 - 104,762,014 (+)NCBI
GRCh3712104,850,692 - 105,155,792 (+)ENTREZGENE
Build 3612103,370,614 - 103,676,013 (+)NCBI Archive
HuRef12101,909,453 - 102,214,785 (+)ENTREZGENE
CHM1_112104,816,552 - 105,121,568 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017019369   ⟹   XP_016874858
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,576,920 - 104,762,014 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_060883   ⟸   NM_018413
- Peptide Label: isoform 1
- UniProtKB: Q9NPF2 (UniProtKB/Swiss-Prot),   A0A024RBL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001167453   ⟸   NM_001173982
- Peptide Label: isoform 2
- UniProtKB: Q9NPF2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016874858   ⟸   XM_017019369
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000448678   ⟸   ENST00000546689
RefSeq Acc Id: ENSP00000449093   ⟸   ENST00000547956
RefSeq Acc Id: ENSP00000450004   ⟸   ENST00000549260
RefSeq Acc Id: ENSP00000449095   ⟸   ENST00000549016
RefSeq Acc Id: ENSP00000305725   ⟸   ENST00000303694

Promoters
RGD ID:6789801
Promoter ID:HG_KWN:16516
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000303694,   NM_001173982,   NM_018413,   UC001TKX.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3612103,374,661 - 103,375,417 (+)MPROMDB
RGD ID:7225241
Promoter ID:EPDNEW_H18366
Type:initiation region
Name:CHST11_1
Description:carbohydrate sulfotransferase 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,457,000 - 104,457,060EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q23.1-23.3(chr12:100670616-108583607)x1 copy number loss See cases [RCV000051320] Chr12:100670616..108583607 [GRCh38]
Chr12:101064394..108977383 [GRCh37]
Chr12:99588525..107501512 [NCBI36]
Chr12:12q23.1-23.3
pathogenic
GRCh38/hg38 12q23.3(chr12:104550262-106565399)x1 copy number loss See cases [RCV000053281] Chr12:104550262..106565399 [GRCh38]
Chr12:104944040..106959177 [GRCh37]
Chr12:103468170..105483307 [NCBI36]
Chr12:12q23.3
uncertain significance
NM_018413.5(CHST11):c.460G>A (p.Glu154Lys) single nucleotide variant Malignant melanoma [RCV000069785] Chr12:104757204 [GRCh38]
Chr12:105150982 [GRCh37]
Chr12:103675112 [NCBI36]
Chr12:12q23.3
not provided
GRCh38/hg38 12q23.3(chr12:103500125-104726872)x1 copy number loss See cases [RCV000138809] Chr12:103500125..104726872 [GRCh38]
Chr12:103893903..105120650 [GRCh37]
Chr12:102418033..103644780 [NCBI36]
Chr12:12q23.3
uncertain significance
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q21.33-24.11(chr12:91044318-109133210)x3 copy number gain See cases [RCV000142447] Chr12:91044318..109133210 [GRCh38]
Chr12:91438095..109571015 [GRCh37]
Chr12:89962226..108055398 [NCBI36]
Chr12:12q21.33-24.11
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12q23.3(chr12:104908843-105074764)x3 copy number gain Premature ovarian failure [RCV000225302] Chr12:104908843..105074764 [GRCh37]
Chr12:12q23.3
uncertain significance
GRCh37/hg19 12q23.2-24.11(chr12:103044333-111639805)x1 copy number loss See cases [RCV000445832] Chr12:103044333..111639805 [GRCh37]
Chr12:12q23.2-24.11
likely pathogenic
GRCh37/hg19 12q23.1-23.3(chr12:100580198-105804075)x3 copy number gain See cases [RCV000445929] Chr12:100580198..105804075 [GRCh37]
Chr12:12q23.1-23.3
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12q23.3(chr12:104539647-104873021)x3 copy number gain not provided [RCV000683422] Chr12:104539647..104873021 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_018413.6(CHST11):c.482_496del (p.Leu161_Asn165del) deletion Osteochondrodysplasia, brachydactyly, and overlapping malformed digits [RCV000714513]|Synpolydactyly 1 [RCV000678393] Chr12:104757222..104757236 [GRCh38]
Chr12:105151000..105151014 [GRCh37]
Chr12:12q23.3
pathogenic|uncertain significance
GRCh37/hg19 12q23.3(chr12:104635115-104904496)x3 copy number gain not provided [RCV000683415] Chr12:104635115..104904496 [GRCh37]
Chr12:12q23.3
uncertain significance
GRCh37/hg19 12q23.3(chr12:104726227-105062113)x1 copy number loss not provided [RCV000845660] Chr12:104726227..105062113 [GRCh37]
Chr12:12q23.3
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12q23.2-23.3(chr12:102414522-105845768)x1 copy number loss not provided [RCV000846678] Chr12:102414522..105845768 [GRCh37]
Chr12:12q23.2-23.3
uncertain significance
GRCh37/hg19 12q23.3(chr12:104944857-105001822)x1 copy number loss not provided [RCV001259629] Chr12:104944857..105001822 [GRCh37]
Chr12:12q23.3
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:17422 AgrOrtholog
COSMIC CHST11 COSMIC
Ensembl Genes ENSG00000171310 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000305725 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000448678 UniProtKB/TrEMBL
  ENSP00000449093 UniProtKB/TrEMBL
  ENSP00000449095 UniProtKB/TrEMBL
  ENSP00000450004 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000303694 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000546689 UniProtKB/TrEMBL
  ENST00000547956 UniProtKB/TrEMBL
  ENST00000549016 UniProtKB/TrEMBL
  ENST00000549260 ENTREZGENE, UniProtKB/Swiss-Prot
GTEx ENSG00000171310 GTEx
HGNC ID HGNC:17422 ENTREZGENE
Human Proteome Map CHST11 Human Proteome Map
InterPro Carb_sulfotrans_8-10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:50515 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 50515 ENTREZGENE
OMIM 610128 OMIM
  618167 OMIM
PANTHER PTHR12137 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134875681 PharmGKB
UniProt A0A024RBL0 ENTREZGENE, UniProtKB/TrEMBL
  CHSTB_HUMAN UniProtKB/Swiss-Prot
  F8VRG6_HUMAN UniProtKB/TrEMBL
  F8VXK3_HUMAN UniProtKB/TrEMBL
  F8VXK7_HUMAN UniProtKB/TrEMBL
  Q9NPF2 ENTREZGENE
UniProt Secondary A8K4F8 UniProtKB/Swiss-Prot
  Q9NXY6 UniProtKB/Swiss-Prot
  Q9NY36 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-09 CHST11  carbohydrate sulfotransferase 11    carbohydrate (chondroitin 4) sulfotransferase 11  Symbol and/or name change 5135510 APPROVED