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Gene: Lgsn (lengsin, lens protein with glutamine synthetase domain) Rattus norvegicus

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Symbol:

Lgsn

Name:

lengsin, lens protein with glutamine synthetase domain

RGD ID:

727925

Description:

Predicted to enable glutamine synthetase activity. Predicted to be involved in glutamine biosynthetic process. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm and membrane. Orthologous to human LGSN (lengsin, lens protein with glutamine synthetase domain); INTERACTS WITH acetamide; aconitine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Gluld1; glutamate-ammonia ligase (glutamine synthase) domain containing 1; glutamate-ammonia ligase (glutamine synthetase) domain containing 1; glutamate-ammonia ligase domain-containing protein 1; lengsin; lens glutamine synthase-like; Lgs

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	40,912,398 - 40,943,955 (+)	NCBI		GRCr8
mRatBN7.2	9	33,416,362 - 33,447,919 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	33,420,484 - 33,447,907 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	41,913,213 - 41,940,643 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	47,045,193 - 47,072,615 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	45,327,050 - 45,354,472 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	37,458,603 - 37,490,117 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	37,462,693 - 37,490,108 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	36,263,149 - 36,294,523 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	29,844,176 - 29,871,557 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	29,845,589 - 29,872,970 (+)	NCBI
Celera	9	31,238,716 - 31,265,934 (+)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lgsn	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Lgsn (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of LGSN mRNA	CTD	PMID:21570461
Lgsn	Rat	acetamide	decreases expression	EXP		6480464	acetamide results in decreased expression of LGSN mRNA	CTD	PMID:31881176
Lgsn	Rat	aconitine	decreases expression	EXP		6480464	Aconitine results in decreased expression of LGSN protein	CTD	PMID:33236894
Lgsn	Rat	aflatoxin B1	decreases methylation	ISO	LGSN (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of LGSN gene	CTD	PMID:27153756
Lgsn	Rat	benzo[a]pyrene	decreases expression	ISO	LGSN (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of LGSN mRNA	CTD	PMID:21871943
Lgsn	Rat	benzo[a]pyrene	decreases methylation	ISO	LGSN (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of LGSN 5' UTR	CTD	PMID:27901495
Lgsn	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of LGSN mRNA	CTD	PMID:25181051
Lgsn	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of LGSN mRNA	CTD	PMID:34947998
Lgsn	Rat	bromobenzene	decreases expression	EXP		6480464	bromobenzene results in decreased expression of LGSN mRNA	CTD	PMID:32479839
Lgsn	Rat	cadmium atom	decreases expression	ISO	LGSN (Homo sapiens)	6480464	Cadmium results in decreased expression of LGSN mRNA	CTD	PMID:24376830
Lgsn	Rat	cadmium dichloride	decreases methylation	EXP		6480464	Cadmium Chloride results in decreased methylation of LGSN promoter	CTD	PMID:22457795
Lgsn	Rat	CGP 52608	multiple interactions	ISO	LGSN (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to LGSN gene]	CTD	PMID:28238834
Lgsn	Rat	copper(II) sulfate	increases expression	ISO	LGSN (Homo sapiens)	6480464	Copper Sulfate results in increased expression of LGSN mRNA	CTD	PMID:19549813
Lgsn	Rat	crocidolite asbestos	decreases expression	ISO	LGSN (Homo sapiens)	6480464	Asbestos and Crocidolite results in decreased expression of LGSN mRNA	CTD	PMID:29523930
Lgsn	Rat	dinophysistoxin 1	decreases expression	ISO	LGSN (Homo sapiens)	6480464	dinophysistoxin 1 results in decreased expression of LGSN mRNA	CTD	PMID:28939011
Lgsn	Rat	endosulfan	decreases expression	EXP		6480464	Endosulfan results in decreased expression of LGSN mRNA	CTD	PMID:29391264
Lgsn	Rat	fenthion	increases expression	ISO	Lgsn (Mus musculus)	6480464	Fenthion results in increased expression of LGSN mRNA	CTD	PMID:34813904
Lgsn	Rat	furan	increases expression	EXP		6480464	furan results in increased expression of LGSN mRNA	CTD	PMID:25539665
Lgsn	Rat	hydrogen peroxide	affects expression	ISO	LGSN (Homo sapiens)	6480464	Hydrogen Peroxide affects the expression of LGSN mRNA	CTD	PMID:20044591
Lgsn	Rat	Licochalcone B	decreases expression	ISO	LGSN (Homo sapiens)	6480464	licochalcone B results in decreased expression of LGSN mRNA	CTD	PMID:33647349
Lgsn	Rat	menadione	affects expression	ISO	LGSN (Homo sapiens)	6480464	Vitamin K 3 affects the expression of LGSN mRNA	CTD	PMID:20044591
Lgsn	Rat	methidathion	increases expression	ISO	Lgsn (Mus musculus)	6480464	methidathion results in increased expression of LGSN mRNA	CTD	PMID:34813904
Lgsn	Rat	methylisothiazolinone	decreases expression	ISO	LGSN (Homo sapiens)	6480464	2-methyl-4-isothiazolin-3-one results in decreased expression of LGSN mRNA	CTD	PMID:31629900
Lgsn	Rat	phenformin	decreases expression	EXP		6480464	Phenformin results in decreased expression of LGSN mRNA	CTD	PMID:31324951
Lgsn	Rat	quercetin	decreases expression	ISO	LGSN (Homo sapiens)	6480464	Quercetin results in decreased expression of LGSN mRNA	CTD	PMID:21632981
Lgsn	Rat	rotenone	decreases expression	EXP		6480464	Rotenone results in decreased expression of LGSN mRNA	CTD	PMID:28374803
Lgsn	Rat	silicon dioxide	decreases expression	ISO	LGSN (Homo sapiens)	6480464	Silicon Dioxide analog results in decreased expression of LGSN mRNA	CTD	PMID:25895662
Lgsn	Rat	sulforaphane	decreases expression	ISO	LGSN (Homo sapiens)	6480464	sulforaphane results in decreased expression of LGSN mRNA	CTD	PMID:31838189
Lgsn	Rat	triptonide	increases expression	ISO	Lgsn (Mus musculus)	6480464	triptonide results in increased expression of LGSN mRNA	CTD	PMID:33045310

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lgsn	Rat	glutamine biosynthetic process	involved_in	IEA	InterPro:IPR008147 and InterPro:IPR036651	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lgsn	Rat	glutamine biosynthetic process	NOT\|involved_in	IBA	PANTHER:PTN000464923 and PANTHER:PTN001073615	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lgsn	Rat	nitrogen utilization	NOT\|involved_in	IBA	PANTHER:PTN000464923 and PANTHER:PTN001073615	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lgsn	Rat	cytoplasm	is_active_in	IBA	PANTHER:PTN000464923 and UniProtKB:P0A9C5	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lgsn	Rat	membrane	is_active_in	IBA	MGI:2672844 and PANTHER:PTN000464923	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lgsn	Rat	plasma membrane	located_in	ISO	Lgsn (Mus musculus)	1624291	PMID:18178558	RGD	PMID:18178558

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lgsn	Rat	glutamine synthetase activity	enables	IEA	InterPro:IPR008146 more ...	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lgsn	Rat	glutamine synthetase activity	NOT\|enables	IBA	PANTHER:PTN000464923 and PANTHER:PTN001073615	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lgsn	Rat	protein binding	enables	ISO	Lgsn (Mus musculus)	1624291	PR:P20152 more ...	RGD	PMID:18178558

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	NCBI rat LocusLink and RefSeq merged data October 15, 2003	NCBI rat LocusLink and RefSeq merged data October 15, 2003
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:18178558

Lgsn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	40,912,398 - 40,943,955 (+)	NCBI		GRCr8
mRatBN7.2	9	33,416,362 - 33,447,919 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	33,420,484 - 33,447,907 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	41,913,213 - 41,940,643 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	47,045,193 - 47,072,615 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	45,327,050 - 45,354,472 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	37,458,603 - 37,490,117 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	37,462,693 - 37,490,108 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	36,263,149 - 36,294,523 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	29,844,176 - 29,871,557 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	29,845,589 - 29,872,970 (+)	NCBI
Celera	9	31,238,716 - 31,265,934 (+)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

LGSN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	63,275,951 - 63,573,607 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	63,275,951 - 63,319,983 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	63,985,856 - 64,029,888 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	64,047,515 - 64,087,841 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	64,047,520 - 64,087,841	NCBI
Celera	6	62,145,321 - 62,189,340 (-)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI
HuRef	6	61,165,803 - 61,209,830 (-)	NCBI		HuRef
CHM1_1	6	64,152,120 - 64,196,163 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	64,421,831 - 64,588,322 (-)	NCBI		T2T-CHM13v2.0

Lgsn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	31,215,362 - 31,243,806 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	31,215,482 - 31,243,806 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	31,176,281 - 31,204,725 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	31,176,401 - 31,204,725 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	31,233,280 - 31,261,570 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	31,120,981 - 31,149,271 (+)	NCBI		MGSCv36	mm8
Celera	1	30,973,296 - 31,001,446 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	11.53	NCBI

Lgsn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955502	483,191 - 552,272 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955502	522,492 - 551,842 (+)	NCBI	ChiLan1.0	ChiLan1.0

LGSN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	78,141,446 - 78,185,404 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	72,801,340 - 72,845,297 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	60,964,873 - 61,008,833 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	66,235,347 - 66,279,272 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	66,239,052 - 66,280,600 (-)	Ensembl	panpan1.1		panPan2

LGSN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	26,852,832 - 26,884,307 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	26,852,851 - 26,919,138 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	26,761,476 - 26,792,749 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	27,389,310 - 27,419,270 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	27,389,326 - 27,454,223 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	26,894,374 - 26,924,142 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	26,976,959 - 27,006,723 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	27,074,028 - 27,103,801 (-)	NCBI		UU_Cfam_GSD_1.0

Lgsn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	62,303,468 - 62,335,915 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	1,624,222 - 1,659,510 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	1,624,287 - 1,656,734 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LGSN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	82,360,774 - 82,387,717 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	82,360,058 - 82,388,479 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	92,641,343 - 92,671,894 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LGSN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	11,419,089 - 11,505,533 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666058	17,765,855 - 17,806,536 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lgsn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	21,650,655 - 21,679,764 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624753	21,645,389 - 21,694,557 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Lgsn
177 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	134
Count of miRNA genes:	110
Interacting mature miRNAs:	117
Transcripts:	ENSRNOT00000016316
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	23754024	61381613	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	23754024	58157242	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
724543	Cm20	Cardiac mass QTL 20	3.9		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	16961398	40594091	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	22133322	49968732	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat

BM389985

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	33,434,506 - 33,434,693 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	37,476,719 - 37,476,904	NCBI	Rnor6.0
Rnor_5.0	9	36,281,231 - 36,281,416	UniSTS	Rnor5.0
RGSC_v3.4	9	29,858,200 - 29,858,386	UniSTS	RGSC3.4
Celera	9	31,252,740 - 31,252,926	UniSTS
RH 3.4 Map	9	339.69	UniSTS
Cytogenetic Map	9	q21	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hepatobiliary system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	1	51	27	34	26	26	57	2	50	21	39	8


RefSeq Transcripts	NM_181383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY280501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016316 ⟹ ENSRNOP00000016316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	33,420,484 - 33,447,907 (+)	Ensembl
Rnor_6.0 Ensembl	9	37,462,693 - 37,490,108 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100875 ⟹ ENSRNOP00000091136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	33,433,531 - 33,447,907 (+)	Ensembl

RefSeq Acc Id:

NM_181383 ⟹ NP_852048

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	40,916,520 - 40,943,944 (+)	NCBI
mRatBN7.2	9	33,420,484 - 33,447,908 (+)	NCBI
Rnor_6.0	9	37,462,693 - 37,490,106 (+)	NCBI
Rnor_5.0	9	36,263,149 - 36,294,523 (+)	NCBI
RGSC_v3.4	9	29,844,176 - 29,871,557 (+)	RGD
Celera	9	31,238,716 - 31,265,934 (+)	RGD

Sequence:

show sequence

GTTGGCAAGGCTGATTTACCGTAAGAAACGGTTGACATGAACGATGAAGGGGACCTTGCACAGGAGGACACAACAAAAGATGAAGCAAACTCGACTGAAGGCAGCAGGGTGAACAAGTTGAAAAGGAC
AAGAAGAAAAGTCACCAAACCACATCTTTGCTCAGCAGATGGGGATGAAATCACCATGGCCAATTCCAGGGAGATGTCCAGAAACCAAACAGCAGATCTGAGCAAACCTGGCTCTGCTGAGTCTTGGT
CCTGGCACAATGCCAAAGACGCCCAAGATCAGATACCAGTGGTAAAATCTTCACTTCCCAGTGCTGGTGCTCCTGATGCTGAATTCAACCCGAATACTGATCACACTCGGGACAATGCTCAGAGTTTG
ATCCTGCCTCAACTTTCTTCTAGAATGAAACACATCAAACAAGAAATGGCCAAAAATCACCTCCAGTTTGTACGATTTGAAGCCACAGACTTGCACGGTGTCTCCAGATCTAAGAGCATCCCTGCACA
ATTTTTTCAAGAAAAAGTGATCCATGGAGTTTTCATGCCCCGTGGTTATCTGGAATTGATGCCGAACCCTAAGGACAATGAGGTAAATCACATACGAGCCACGTGCTTCAATAGTGACATAGTCCTCA
TGCCAGAGCTGTCGACCTTTAGAGTCTTGCCTTGGGCAGAGAGGACTGCGCGGGTGATTTGTGACACCTTCACTGTGACGGGCGAGCCTCTGCTGACGTCCCCTAGGTACATCGCCAAGAGGCAGTTG
CGCCAGCTGCAGGATGCCGGCTTCTCTCTGCTGTCTGCCTTCATCTATGATTTCTGCATTTTCGGTGTGCCCGAAGTGATCAATTCAAAGACCATATCTTTTCCTGCCTCGACATTACTAAGTAATCA
TGACCAGCCCTTCATGCAGGAGCTGGTTGACGGCTTGTATCACACAGGGGCAAATGTGGAGAGCTTCTCCTCTTCTACCAGGCCTGGGCAAATGGAGATCTGTTTTCTCCCGGAGTTTGGCATTAGCT
CAGCGGATAATGCCTTCACCCTCAGAACAGGTGTCCAAGAAGTGGCCAGGAGATATAACTACATAGCAAGCCTTGTAATTGAGACTGGATTCTGCAACTCAGGAATTTTGTCTCATAGCATCTGGGAT
GTGAGCGGGAAGACAAACATGTTCTACAGTGGTTCTGGGGTGGAGAGGCTCACGCTCACCGGGAAGAAGTGGTTGGCAGGCCTGCTGAAGCACTCTGCGGCTCTCAGCTGCCTGATGGCCCCTGCTGT
CAACTGCCGCAAACGCTACTGCAAGGACAGCAGAGACCTGAAGGACAGCGTGCCCACCACGTGGGGATACAACGACAACAGCTGTGCCTTGAACGTCAAGTGTCATGGTGAAAAAGGCACCCAGATAG
AAAATAAATTAGGTTCGGCAACCGCGAACCCTTACCTGGTATTGGCCGCTACTGTGGCAGCAGGCTTGGATGGTCTTCAGAGCAGTGATGGTGCTGCGGCTGAATCCGATGAGAGCCAGGATCTCTAT
CAACCAGAACCTTCCGAGATCCCTTTGAAGATGGAAGATGCCCTCGCCGCCCTAGAGCAAGATGAGTGTCTGAAGCAGGCACTGGGAGAGACTTTCATTCGCTATTTTGTTGCCATGAAGAAGTACGA
ACTGGAAAATGAAGAAACAGACGCAGAGGGAAATAAATTCCTGGAGTATTTTATATAGGATGGAACTATAGAGATGTTATTATGACAAGTAGCTAGTTTATCAGAATGAAAAGATTGAGCCTTTGCAG
TTAACAACACTAGACAGCTTCTGCCCCTCCCCCACGGATTACTGGGCAGATGAAATGGGATTGGTGAGATCCTGATTTCAGCTATAGACAATAAATTTGTGGTGAAACAGCAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017596436 ⟹ XP_017451925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	40,912,398 - 40,943,955 (+)	NCBI
mRatBN7.2	9	33,416,362 - 33,447,919 (+)	NCBI
Rnor_6.0	9	37,458,603 - 37,490,117 (+)	NCBI

Sequence:

show sequence

AATGCCATTTACTTTTAGCAGTTTTAGAGCTTAACTAGTGGAGGCAGACATAGAAGGGCTGTTCATAAAATAATTTGCAGTGCAGAGTAAGGAAAAAGTACGTATATAGCATGGAGACAGAAGACAAT
TTTCTCGGGCAGTTAGAAGTGAAGCCCACAGCCGGCAAACATAACAGCGTCAACGCCAGACCAGACCAGCCAGGATGTTGTAACTGGCTATGGGAAGCCCCGCGTGAAAGCTGCTCTAACTTTGATCT
GTTACTGTGATGTCACATGTACAGCAACATGTGCTCTGCGTGTGGCACGAAAACGCTGGACACAACAAAAGATGAAGCAAACTCGACTGAAGGCAGCAGGGTGAACAAGTTGAAAAGGACAAGAAGAA
AAGTCACCAAACCACATCTTTGCTCAGCAGATGGGGATGAAATCACCATGGCCAATTCCAGGGAGATGTCCAGAAACCAAACAGCAGATCTGAGCAAACCTGGCTCTGCTGAGTCTTGGTCCTGGCAC
AATGCCAAAGACGCCCAAGATCAGATACCAGTGGTAAAATCTTCACTTCCCAGTGCTGGTGCTCCTGATGCTGAATTCAACCCGAATACTGATCACACTCGGGACAATGCTCAGAGTTTGATCCTGCC
TCAACTTTCTTCTAGAATGAAACACATCAAACAAGAAATGGCCAAAAATCACCTCCAGTTTGTACGATTTGAAGCCACAGACTTGCACGGTGTCTCCAGATCTAAGAGCATCCCTGCACAATTTTTTC
AAGAAAAAGTGATCCATGGAGTTTTCATGCCCCGTGGTTATCTGGAATTGATGCCGAACCCTAAGGACAATGAGGTAAATCACATACGAGCCACGTGCTTCAATAGTGACATAGTCCTCATGCCAGAG
CTGTCGACCTTTAGAGTCTTGCCTTGGGCAGAGAGGACTGCGCGGGTGATTTGTGACACCTTCACTGTGACGGGCGAGCCTCTGCTGACGTCCCCTAGGTACATCGCCAAGAGGCAGTTGCGCCAGCT
GCAGGATGCCGGCTTCTCTCTGCTGTCTGCCTTCATCTATGATTTCTGCATTTTCGGTGTGCCCGAAGTGATCAATTCAAAGACCATATCTTTTCCTGCCTCGACATTACTAAGTAATCATGACCAGC
CCTTCATGCAGGAGCTGGTTGACGGCTTGTATCACACAGGGGCAAATGTGGAGAGCTTCTCCTCTTCTACCAGGCCTGGGCAAATGGAGATCTGTTTTCTCCCGGAGTTTGGCATTAGCTCAGCGGAT
AATGCCTTCACCCTCAGAACAGGTGTCCAAGAAGTGGCCAGGAGATATAACTACATAGCAAGCCTTGTAATTGAGACTGGATTCTGCAACTCAGGAATTTTGTCTCATAGCATCTGGGATGTGAGCGG
GAAGACAAACATGTTCTACAGTGGTTCTGGGGTGGAGAGGCTCACGCTCACCGGGAAGAAGTGGTTGGCAGGCCTGCTGAAGCACTCTGCGGCTCTCAGCTGCCTGATGGCCCCTGCTGTCAACTGCC
GCAAACGCTACTGCAAGGACAGCAGAGACCTGAAGGACAGCGTGCCCACCACGTGGGGATACAACGACAACAGCTGTGCCTTGAACGTCAAGTGTCATGGTGAAAAAGGCACCCAGATAGAAAATAAA
TTAGGTTCGGCAACCGCGAACCCTTACCTGGTATTGGCCGCTACTGTGGCAGCAGGCTTGGATGGTCTTCAGAGCAGTGATGGTGCTGCGGCTGAATCCGATGAGAGCCAGGATCTCTATCAACCAGA
ACCTTCCGAGATCCCTTTGAAGATGGAAGATGCCCTCGCCGCCCTAGAGCAAGATGAGTGTCTGAAGCAGGCACTGGGAGAGACTTTCATTCGCTATTTTGTTGCCATGAAGAAGTACGAACTGGAAA
ATGAAGAAACAGACGCAGAGGGAAATAAATTCCTGGAGTATTTTATATAGGATGGAACTATAGAGATGTTATTATGACAAGTAGCTAGTTTATCAGAATGAAAAGATTGAGCCTTTGCAGTTAACAAC
ACTAGACAGCTTCTGCCCCTCCCCCACGGATTACTGGGCAGATGAAATGGGATTGGTGAGATCCTGATTTCAGCTATAGACAATAAATTTGTGGTGAAACAGCATATGCAAACTT

hide sequence

RefSeq Acc Id:

XM_017596437 ⟹ XP_017451926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	40,912,398 - 40,943,955 (+)	NCBI
mRatBN7.2	9	33,416,362 - 33,447,919 (+)	NCBI
Rnor_6.0	9	37,458,603 - 37,490,117 (+)	NCBI

Sequence:

show sequence

AATGCCATTTACTTTTAGCAGTTTTAGAGCTTAACTAGTGGAGGCAGACATAGAAGGGCTGTTCATAAAATAATTTGCAGTGCAGAGTAAGGAAAAAGTACGTATATAGCATGGAGACAGAAGACAAT
TTTCTCGGGCAGTTAGAAGTGAAGCCCACAGCCGGCAAACATAACAGCGTCAACGCCAGACCAGACCAGCCAGGATGTTGTAACTGGCTATGGGAAGCCCCGCGTGAAAGCTGCTCTAACTTTGATCT
GTTACTGTGATGTCACATGTACAGCAACATGTGCTCTGCGTGTGGCACGAAAACGCTGGGAGTCAGGCATAAACGAGCATTTGTTGCTGGGCTATTCCAGGGCATTGCTCATACCCTGTGCCTTGGGC
ATGACAGAATCTGCGTTTATCTTTTATTACCTGCTGGATCGTCCTGGAAAGGACCTCCTGGAATTCATCATTCACTCCTTTGTTAGAGGTCTACATATAAATGCACCCTGAAGCCATCGCTGAAGGGA
GTGTGGTTGGCAAGGCTGATTTACCGTAAGAAACGGTTGACATGAACGATGAAGGGGACCTTGCACAGGAGGACACAACAAAAGATGAAGCAAACTCGACTGAAGGCAGCAGGGTGAACAAGTTGAAA
AGGACAAGAAGAAAAGTCACCAAACCACATCTTTGCTCAGCAGATGGGGATGAAATCACCATGGCCAATTCCAGGGAGATGTCCAGAAACCAAACAGCAGATCTGAGCAAACCTGGCTCTGCTGAGTC
TTGGTCCTGGCACAATGCCAAAGACGCCCAAGATCAGATACCAGTGGTAAAATCTTCACTTCCCAGTGCTGGTGCTCCTGATGCTGAATTCAACCCGAATACTGATCACACTCGGGACAATGCTCAGA
GTTTGATCCTGCCTCAACTTTCTTCTAGAATGAAACACATCAAACAAGAAATGGCCAAAAATCACCTCCAGTTTGTACGATTTGAAGCCACAGACTTGCACGGTGTCTCCAGATCTAAGAGCATCCCT
GCACAATTTTTTCAAGAAAAAGTGATCCATGGAGTTTTCATGCCCCGTGGTTATCTGGAATTGATGCCGAACCCTAAGGACAATGAGGTAAATCACATACGAGCCACGTGCTTCAATAGTGACATAGT
CCTCATGCCAGAGCTGTCGACCTTTAGAGTCTTGCCTTGGGCAGAGAGGACTGCGCGGGTGATTTGTGACACCTTCACTGTGACGGGCGAGCCTCTGCTGACGTCCCCTAGGTACATCGCCAAGAGGC
AGTTGCGCCAGCTGCAGGATGCCGGCTTCTCTCTGCTGTCTGCCTTCATCTATGATTTCTGCATTTTCGGTGTGCCCGAAGTGATCAATTCAAAGACCATATCTTTTCCTGCCTCGACATTACTAAGT
AATCATGACCAGCCCTTCATGCAGGAGCTGGTTGACGGCTTGTATCACACAGGGGCAAATGTGGAGAGCTTCTCCTCTTCTACCAGGCCTGGGCAAATGGAGATCTGTTTTCTCCCGGAGTTTGGCAT
TAGCTCAGCGGATAATGCCTTCACCCTCAGAACAGGTGTCCAAGAAGTGGCCAGGAGATATAACTACATAGCAAGCCTTGTAATTGAGACTGGATTCTGCAACTCAGGAATTTTGTCTCATAGCATCT
GGGATGTGAGCGGGAAGACAAACATGTTCTACAGTGGTTCTGGGGTGGAGAGGCTCACGCTCACCGGGAAGAAGTGGTTGGCAGGCCTGCTGAAGCACTCTGCGGCTCTCAGCTGCCTGATGGCCCCT
GCTGTCAACTGCCGCAAACGCTACTGCAAGGACAGCAGAGACCTGAAGGACAGCGTGCCCACCACGTGGGGATACAACGACAACAGCTGTGCCTTGAACGTCAAGTGTCATGGTGAAAAAGGCACCCA
GATAGAAAATAAATTAGGTTCGGCAACCGCGAACCCTTACCTGGTATTGGCCGCTACTGTGGCAGCAGGCTTGGATGGTCTTCAGAGCAGTGATGGTGCTGCGGCTGAATCCGATGAGAGCCAGGATC
TCTATCAACCAGAACCTTCCGAGATCCCTTTGAAGATGGAAGATGCCCTCGCCGCCCTAGAGCAAGATGAGTGTCTGAAGCAGGCACTGGGAGAGACTTTCATTCGCTATTTTGTTGCCATGAAGAAG
TACGAACTGGAAAATGAAGAAACAGACGCAGAGGGAAATAAATTCCTGGAGTATTTTATATAGGATGGAACTATAGAGATGTTATTATGACAAGTAGCTAGTTTATCAGAATGAAAAGATTGAGCCTT
TGCAGTTAACAACACTAGACAGCTTCTGCCCCTCCCCCACGGATTACTGGGCAGATGAAATGGGATTGGTGAGATCCTGATTTCAGCTATAGACAATAAATTTGTGGTGAAACAGCATATGCAAACTT

hide sequence

RefSeq Acc Id:

XM_039083550 ⟹ XP_038939478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	40,930,850 - 40,943,955 (+)	NCBI
mRatBN7.2	9	33,434,814 - 33,447,919 (+)	NCBI


Protein RefSeqs	NP_852048	(Get FASTA)	NCBI Sequence Viewer
	XP_017451925	(Get FASTA)	NCBI Sequence Viewer
	XP_017451926	(Get FASTA)	NCBI Sequence Viewer
	XP_038939478	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAP34385	(Get FASTA)	NCBI Sequence Viewer
	EDL99326	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016316.3
	ENSRNOP00000091136.1
GenBank Protein	Q7TT51	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_852048 ⟸ NM_181383

- UniProtKB:

Q7TT51 (UniProtKB/Swiss-Prot), A6IN83 (UniProtKB/TrEMBL), A0A8I6ADX5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNDEGDLAQEDTTKDEANSTEGSRVNKLKRTRRKVTKPHLCSADGDEITMANSREMSRNQTADLSKPGSAESWSWHNAKDAQDQIPVVKSSLPSAGAPDAEFNPNTDHTRDNAQSLILPQLSSRMKHI
KQEMAKNHLQFVRFEATDLHGVSRSKSIPAQFFQEKVIHGVFMPRGYLELMPNPKDNEVNHIRATCFNSDIVLMPELSTFRVLPWAERTARVICDTFTVTGEPLLTSPRYIAKRQLRQLQDAGFSLLS
AFIYDFCIFGVPEVINSKTISFPASTLLSNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEICFLPEFGISSADNAFTLRTGVQEVARRYNYIASLVIETGFCNSGILSHSIWDVSGKTNMFYSGS
GVERLTLTGKKWLAGLLKHSAALSCLMAPAVNCRKRYCKDSRDLKDSVPTTWGYNDNSCALNVKCHGEKGTQIENKLGSATANPYLVLAATVAAGLDGLQSSDGAAAESDESQDLYQPEPSEIPLKME
DALAALEQDECLKQALGETFIRYFVAMKKYELENEETDAEGNKFLEYFI

hide sequence

RefSeq Acc Id:	XP_017451926 ⟸ XM_017596437
- Peptide Label:	isoform X2
- UniProtKB:	Q7TT51 (UniProtKB/Swiss-Prot), A6IN83 (UniProtKB/TrEMBL), A0A8I6ADX5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDEGDLAQEDTTKDEANSTEGSRVNKLKRTRRKVTKPHLCSADGDEITMANSREMSRNQTADL SKPGSAESWSWHNAKDAQDQIPVVKSSLPSAGAPDAEFNPNTDHTRDNAQSLILPQLSSRMKHIKQEMAKNHLQFVRFEATDLHGVSRSKSIPAQFFQEKVIHGVFMPRGYLELMPNPKDNEVNHIRA TCFNSDIVLMPELSTFRVLPWAERTARVICDTFTVTGEPLLTSPRYIAKRQLRQLQDAGFSLLSAFIYDFCIFGVPEVINSKTISFPASTLLSNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEI CFLPEFGISSADNAFTLRTGVQEVARRYNYIASLVIETGFCNSGILSHSIWDVSGKTNMFYSGSGVERLTLTGKKWLAGLLKHSAALSCLMAPAVNCRKRYCKDSRDLKDSVPTTWGYNDNSCALNVK CHGEKGTQIENKLGSATANPYLVLAATVAAGLDGLQSSDGAAAESDESQDLYQPEPSEIPLKMEDALAALEQDECLKQALGETFIRYFVAMKKYELENEETDAEGNKFLEYFI hide sequence

RefSeq Acc Id:	XP_017451925 ⟸ XM_017596436
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ADX5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYSNMCSACGTKTLDTTKDEANSTEGSRVNKLKRTRRKVTKPHLCSADGDEITMANSREMSRNQTADLSKPGSAESWSWHNAKDAQDQIPVVKSSLPSAGAPDAEFNPNTDHTRDNAQSLILPQLSSR MKHIKQEMAKNHLQFVRFEATDLHGVSRSKSIPAQFFQEKVIHGVFMPRGYLELMPNPKDNEVNHIRATCFNSDIVLMPELSTFRVLPWAERTARVICDTFTVTGEPLLTSPRYIAKRQLRQLQDAGF SLLSAFIYDFCIFGVPEVINSKTISFPASTLLSNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEICFLPEFGISSADNAFTLRTGVQEVARRYNYIASLVIETGFCNSGILSHSIWDVSGKTNMF YSGSGVERLTLTGKKWLAGLLKHSAALSCLMAPAVNCRKRYCKDSRDLKDSVPTTWGYNDNSCALNVKCHGEKGTQIENKLGSATANPYLVLAATVAAGLDGLQSSDGAAAESDESQDLYQPEPSEIP LKMEDALAALEQDECLKQALGETFIRYFVAMKKYELENEETDAEGNKFLEYFI hide sequence

Ensembl Acc Id:

ENSRNOP00000016316 ⟸ ENSRNOT00000016316

RefSeq Acc Id:	XP_038939478 ⟸ XM_039083550
- Peptide Label:	isoform X3

Protein Domains

GS beta-grasp GS catalytic

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q7TT51-F1-model_v2	AlphaFold	Q7TT51	1-561	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-27895	BioCyc
Ensembl Genes	ENSRNOG00000012205	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016316.5	UniProtKB/Swiss-Prot
	ENSRNOT00000100875.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.20.70	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glutamine synthetase/guanido kinase, catalytic domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Gln_synt_N	UniProtKB/Swiss-Prot
	Gln_synt_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Gln_synt_N	UniProtKB/TrEMBL
	Gln_synth/guanido_kin_cat_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Gln_synth_cat_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:316304	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	316304	ENTREZGENE
PANTHER	GLUTAMINE SYNTHETASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LENGSIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Gln-synt_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Lgsn	PhenoGen
PROSITE	GS_BETA_GRASP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GS_CATALYTIC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012205	RatGTEx
SMART	Gln-synt_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54368	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF55931	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6ADX5	ENTREZGENE, UniProtKB/TrEMBL
	A6IN83	ENTREZGENE, UniProtKB/TrEMBL
	LGSN_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-16	Lgsn	lengsin, lens protein with glutamine synthetase domain	Gluld1	glutamate-ammonia ligase (glutamine synthetase) domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Gluld1	glutamate-ammonia ligase (glutamine synthetase) domain containing 1		glutamate-ammonia ligase (glutamine synthase) domain containing 1	Name updated	1299863	APPROVED
2004-09-10	Gluld1	glutamate-ammonia ligase (glutamine synthase) domain containing 1	Lgs	lengsin	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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