Grina (glutamate ionotropic receptor NMDA type subunit associated protein 1) - Rat Genome Database

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Gene: Grina (glutamate ionotropic receptor NMDA type subunit associated protein 1) Rattus norvegicus
Analyze
Symbol: Grina
Name: glutamate ionotropic receptor NMDA type subunit associated protein 1
RGD ID: 628873
Description: Predicted to enable transmembrane transporter binding activity. Predicted to be involved in negative regulation of apoptotic signaling pathway. Predicted to act upstream of or within endoplasmic reticulum calcium ion homeostasis and negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and membrane. Orthologous to human GRINA (glutamate ionotropic receptor NMDA type subunit associated protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: glutamate [NMDA] receptor-associated protein 1; glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding); N-methyl-D-aspartate receptor glutamate-binding chain; NMDA receptor glutamate-binding chain; NMDA receptor glutamate-binding subunit; protein lifeguard 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,842,870 - 109,846,048 (+)NCBIGRCr8
mRatBN7.27107,962,194 - 107,965,372 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,962,207 - 107,965,366 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,705,794 - 109,708,972 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,929,476 - 111,932,654 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,887,957 - 111,891,135 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,304,742 - 117,307,916 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,304,742 - 117,307,916 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,290,445 - 117,293,621 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,277,208 - 114,280,339 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,311,439 - 114,314,569 (+)NCBI
Celera7104,314,740 - 104,317,914 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (ISO)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
5-fluorouracil  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
amiodarone  (EXP)
aristolochic acid A  (ISO)
atrazine  (ISO)
azoxystrobin  (EXP)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bexarotene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
carbon nanotube  (ISO)
chlorpyrifos  (EXP,ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (EXP,ISO)
clotrimazole  (EXP)
cocaine  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diazinon  (EXP)
dibutyl phthalate  (EXP)
dieldrin  (EXP)
diethylstilbestrol  (ISO)
diquat  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
ethanol  (EXP)
fenthion  (ISO)
finasteride  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
imidacloprid  (EXP)
indometacin  (ISO)
inulin  (ISO)
isoprenaline  (ISO)
ketoconazole  (ISO)
L-ethionine  (EXP)
methamphetamine  (ISO)
methimazole  (EXP)
N-nitrosodiethylamine  (ISO)
nefazodone  (EXP)
nickel atom  (EXP)
omeprazole  (EXP)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pinostrobin  (ISO)
pirinixic acid  (EXP,ISO)
rac-lactic acid  (ISO)
raloxifene  (EXP)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
endoplasmic reticulum  (IBA,IEA,ISO)
Golgi apparatus  (IBA,IEA,ISO)
membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cloning of cDNA for the glutamate-binding subunit of an NMDA receptor complex. Kumar KN, etal., Nature 1991 Nov 7;354(6348):70-3.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:22240901  


Genomics

Comparative Map Data
Grina
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,842,870 - 109,846,048 (+)NCBIGRCr8
mRatBN7.27107,962,194 - 107,965,372 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,962,207 - 107,965,366 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,705,794 - 109,708,972 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,929,476 - 111,932,654 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,887,957 - 111,891,135 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,304,742 - 117,307,916 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,304,742 - 117,307,916 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,290,445 - 117,293,621 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,277,208 - 114,280,339 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,311,439 - 114,314,569 (+)NCBI
Celera7104,314,740 - 104,317,914 (+)NCBICelera
Cytogenetic Map7q34NCBI
GRINA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,990,056 - 143,993,415 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,990,056 - 143,993,415 (+)EnsemblGRCh38hg38GRCh38
GRCh378145,064,224 - 145,067,583 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,136,214 - 145,139,571 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map8q24.3NCBI
HuRef8140,305,288 - 140,323,781 (+)NCBIHuRef
CHM1_18145,104,475 - 145,107,832 (+)NCBICHM1_1
T2T-CHM13v2.08145,150,254 - 145,153,613 (+)NCBIT2T-CHM13v2.0
Grina
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,130,917 - 76,134,109 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,130,964 - 76,134,104 (+)EnsemblGRCm39 Ensembl
GRCm381576,246,717 - 76,249,909 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,246,764 - 76,249,904 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,077,237 - 76,080,334 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,074,062 - 76,077,159 (+)NCBIMGSCv36mm8
Celera1577,746,755 - 77,749,852 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.59NCBI
Grina
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,658,490 - 2,660,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,657,374 - 2,660,591 (+)NCBIChiLan1.0ChiLan1.0
GRINA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,479,190 - 161,483,099 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,009,368 - 137,012,765 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl8143,749,331 - 143,752,071 (+)Ensemblpanpan1.1panPan2
GRINA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,512,129 - 37,514,303 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,512,217 - 37,514,257 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,475,101 - 37,478,196 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,987,687 - 37,990,781 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11337,659,794 - 37,662,885 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,787,997 - 37,791,086 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,264,550 - 38,267,645 (+)NCBIUU_Cfam_GSD_1.0
Grina
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303754,364 - 757,621 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364708,180,468 - 8,183,694 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRINA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4682,835 - 686,116 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14682,823 - 686,144 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GRINA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,199,642 - 138,202,989 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,200,792 - 138,202,453 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,670,935 - 1,674,284 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Grina
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,821,243 - 12,822,787 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,820,678 - 12,823,920 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Grina
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:53
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000059599
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat

Markers in Region
RH129014  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27107,965,158 - 107,965,341 (+)MAPPERmRatBN7.2
Rnor_6.07117,307,707 - 117,307,889NCBIRnor6.0
Rnor_5.07117,293,410 - 117,293,592UniSTSRnor5.0
RGSC_v3.47114,280,131 - 114,280,313UniSTSRGSC3.4
Celera7104,317,705 - 104,317,887UniSTS
RH 3.4 Map7788.7UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000059599   ⟹   ENSRNOP00000056356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,962,207 - 107,965,366 (+)Ensembl
Rnor_6.0 Ensembl7117,304,742 - 117,307,916 (+)Ensembl
RefSeq Acc Id: NM_153308   ⟹   NP_695220
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,842,870 - 109,846,048 (+)NCBI
mRatBN7.27107,962,194 - 107,965,372 (+)NCBI
Rnor_6.07117,304,742 - 117,307,916 (+)NCBI
Rnor_5.07117,290,445 - 117,293,621 (+)NCBI
RGSC_v3.47114,277,208 - 114,280,339 (+)RGD
Celera7104,314,740 - 104,317,914 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_695220   ⟸   NM_153308
- UniProtKB: Q6P6R0 (UniProtKB/Swiss-Prot),   A6HS73 (UniProtKB/TrEMBL),   A6HS70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000056356   ⟸   ENSRNOT00000059599

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P6R0-F1-model_v2 AlphaFold Q6P6R0 1-348 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695410
Promoter ID:EPDNEW_R5933
Type:initiation region
Name:Grina_1
Description:glutamate ionotropic receptor NMDA type subunit associated protein1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,304,805 - 117,304,865EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628873 AgrOrtholog
BioCyc Gene G2FUF-32946 BioCyc
Ensembl Genes ENSRNOG00000029941 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00055025278 UniProtKB/Swiss-Prot
  ENSRNOG00060024303 UniProtKB/Swiss-Prot
  ENSRNOG00065009619 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000059599 ENTREZGENE
  ENSRNOT00000059599.4 UniProtKB/TrEMBL
  ENSRNOT00055043601 UniProtKB/Swiss-Prot
  ENSRNOT00060042074 UniProtKB/Swiss-Prot
  ENSRNOT00065015423 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5599428 IMAGE-MGC_LOAD
InterPro Bax_inhibitor_1-related UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:266668 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72284 IMAGE-MGC_LOAD
NCBI Gene 266668 ENTREZGENE
PANTHER PROTEIN LIFEGUARD 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23291 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Bax1-I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Grina PhenoGen
RatGTEx ENSRNOG00000029941 RatGTEx
  ENSRNOG00055025278 RatGTEx
  ENSRNOG00060024303 RatGTEx
  ENSRNOG00065009619 RatGTEx
UniProt A0A8L2QRQ2_RAT UniProtKB/TrEMBL
  A6HS70 ENTREZGENE, UniProtKB/TrEMBL
  A6HS73 ENTREZGENE, UniProtKB/TrEMBL
  A6HS74_RAT UniProtKB/TrEMBL
  LFG1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Grina  glutamate ionotropic receptor NMDA type subunit associated protein 1  Grina  glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27     Grina  glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-01   glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)  Grina  glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding)  Name updated 1299863 APPROVED
2004-09-10 Grina  glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding)    NMDA receptor glutamate-binding chain  Name updated 1299863 APPROVED
2003-02-27 Grina  NMDA receptor glutamate-binding chain      Symbol and Name status set to provisional 70820 PROVISIONAL