Ptgr1 (prostaglandin reductase 1) - Rat Genome Database

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Gene: Ptgr1 (prostaglandin reductase 1) Rattus norvegicus
Analyze
Symbol: Ptgr1
Name: prostaglandin reductase 1
RGD ID: 621195
Description: Enables 15-oxoprostaglandin 13-oxidase [NAD(P)+] activity and 2-alkenal reductase (NADPH) activity. Involved in several processes, including leukotriene B4 metabolic process; negative regulation of reactive oxygen species biosynthetic process; and response to antineoplastic agent. Located in cytosol and nucleus. Biomarker of hypertension. Orthologous to human PTGR1 (prostaglandin reductase 1); INTERACTS WITH 1,2,4-trimethylbenzene; 1-penten-3-one; 15-dehydro-prostaglandin E2.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 15-oxoprostaglandin 13-reductase; D3T-inducible gene 1 protein; DIG-1; Dig1; dithiolethione-inducible gene 1 protein; dithiolethione-inducible gene-1; leukotriene B4 12-hydroxydehydrogenase; Ltb4dh; NAD(P)H-dependent alkenal/one oxidoreductase; NADP-dependent leukotriene B4 12-hydroxydehydrogenase; PRG-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8578,579,060 - 78,597,671 (-)NCBIGRCr8
mRatBN7.2573,784,000 - 73,802,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl573,784,009 - 73,802,666 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx575,685,300 - 75,703,919 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0577,506,913 - 77,525,540 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0577,479,071 - 77,497,693 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0576,110,746 - 76,129,361 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl576,110,738 - 76,129,441 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,255,192 - 80,273,709 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,010,809 - 77,029,326 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1577,015,922 - 77,034,439 (-)NCBI
Celera572,607,043 - 72,625,264 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ptgr1RatExperimental Liver Neoplasms  IEP 14401713mRNA and protein:increased expression:liverRGD 
Ptgr1Rathypertension  IEP 401959217mRNA:decreased expression:rostral ventrolateral medulla more ...RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ptgr1Ratautism spectrum disorder  ISOPTGR1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:35663546

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ptgr1Rat(1->4)-beta-D-glucan multiple interactionsISOPtgr1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of PTGR1 mRNACTDPMID:36331819
Ptgr1Rat(E)-cinnamyl alcohol increases expressionISOPTGR1 (Homo sapiens)6480464cinnamyl alcohol results in increased expression of PTGR1 mRNACTDPMID:20566472
Ptgr1Rat1,1-dichloroethene increases expressionISOPtgr1 (Mus musculus)6480464vinylidene chloride results in increased expression of PTGR1 mRNACTDPMID:26682919
Ptgr1Rat1,2,4-trimethylbenzene decreases expressionEXP 6480464pseudocumene results in decreased expression of PTGR1 proteinCTDPMID:17337753
Ptgr1Rat1,2-dichloroethane decreases expressionISOPtgr1 (Mus musculus)6480464ethylene dichloride results in decreased expression of PTGR1 mRNACTDPMID:28189721 and PMID:28960355
Ptgr1Rat1,2-dimethylhydrazine multiple interactionsISOPtgr1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of PTGR1 mRNACTDPMID:22206623
Ptgr1Rat1-chloro-2,4-dinitrobenzene increases expressionISOPTGR1 (Homo sapiens)6480464Dinitrochlorobenzene results in increased expression of PTGR1 mRNACTDPMID:20566472
Ptgr1Rat1-Hydroxypyrene increases expressionISOPTGR1 (Homo sapiens)64804641-hydroxypyrene results in increased expression of PTGR1 mRNACTDPMID:21854004
Ptgr1Rat1-penten-3-one multiple interactionsEXP 6480464[PTGR1 protein co-treated with NADP] affects the reduction of 1-pentene-3-oneCTDPMID:11524419
Ptgr1Rat13,14-dihydro-15-keto-PGF2alpha multiple interactionsISOPTGR1 (Homo sapiens)6480464[PTGR1 protein results in increased metabolism of 15-ketoprostaglandin F2alpha] which results in increased abundance of 15-keto-13 and 14-dihydroprostaglandin F2alphaCTDPMID:25619643
Ptgr1Rat13,14-dihydro-15-keto-PGF2alpha increases abundanceISOPTGR1 (Homo sapiens)6480464PTGR1 protein results in increased abundance of 15-keto-13 and 14-dihydroprostaglandin F2alphaCTDPMID:25619643
Ptgr1Rat13,14-dihydro-15-oxo-prostaglandin E2 increases abundanceISOPTGR1 (Homo sapiens)6480464PTGR1 protein results in increased abundance of 15-keto-13 and 14-dihydroprostaglandin E2CTDPMID:25619643
Ptgr1Rat13,14-dihydro-15-oxo-prostaglandin E2 multiple interactionsISOPTGR1 (Homo sapiens)6480464[PTGR1 protein results in increased metabolism of 15-ketoprostaglandin E2] which results in increased abundance of 15-keto-13 and 14-dihydroprostaglandin E2CTDPMID:25619643
Ptgr1Rat13,14-dihydro-15-oxoprostaglandin E1 multiple interactionsISOPTGR1 (Homo sapiens)6480464[PTGR1 protein results in increased metabolism of 15-ketoprostaglandin E] which results in increased abundance of 13 and 14-dihydro-15-ketoprostaglandin E1CTDPMID:25619643
Ptgr1Rat13,14-dihydro-15-oxoprostaglandin E1 increases abundanceISOPTGR1 (Homo sapiens)6480464PTGR1 protein results in increased abundance of 13 and 14-dihydro-15-ketoprostaglandin E1CTDPMID:25619643
Ptgr1Rat15-dehydro-prostaglandin E2 multiple interactionsEXP 648046415-ketoprostaglandin E2 inhibits the reaction [PTGR1 protein results in increased reduction of 10-nitro-oleic acid analog] more ...CTDPMID:23878198
Ptgr1Rat15-dehydro-prostaglandin E2 multiple interactionsISOPTGR1 (Homo sapiens)6480464[PTGR1 protein results in increased metabolism of 15-ketoprostaglandin E2] which results in increased abundance of 15-keto-13 and 14-dihydroprostaglandin E2CTDPMID:25619643
Ptgr1Rat15-dehydro-prostaglandin E2 increases metabolic processingISOPTGR1 (Homo sapiens)6480464PTGR1 protein results in increased metabolism of 15-ketoprostaglandin E2CTDPMID:25619643
Ptgr1Rat15-dehydro-prostaglandin E2 increases reductionEXP 6480464PTGR1 protein results in increased reduction of 15-ketoprostaglandin E2CTDPMID:23878198
Ptgr1Rat15-oxoprostaglandin F2alpha increases metabolic processingISOPTGR1 (Homo sapiens)6480464PTGR1 protein results in increased metabolism of 15-ketoprostaglandin F2alphaCTDPMID:25619643

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Biological Process
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Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ptgr1Ratcytoplasm located_inISOPTGR1 (Sus scrofa)1624291 PMID:8394361RGDPMID:8394361
Ptgr1Ratcytoplasm located_inISSUniProtKB:Q290731600115GO_REF:0000024UniProtGO_REF:0000024
Ptgr1Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Ptgr1Ratcytoplasm  IDA 14401713ex vivo light microscopy with immunohistochemistry MMO:0000538RGD 
Ptgr1Ratcytosol  IDA 401959219cell fractionation MMO:0000679RGD 
Ptgr1Ratnucleus  IDA 14401713ex vivo light microscopy with immunohistochemistry MMO:0000538RGD 

Molecular Function
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Ptgr1Rat13-lipoxin reductase activity enablesISSUniProtKB:Q290731600115GO_REF:0000024UniProtGO_REF:0000024
Ptgr1Rat13-lipoxin reductase activity enablesISOPTGR1 (Sus scrofa)1624291 PMID:11688989RGDPMID:11688989
Ptgr1Rat15-oxoprostaglandin 13-oxidase [NAD(P)+] activity enablesIDA 38501077PMID:11524419UniProt 
Ptgr1Rat15-oxoprostaglandin 13-oxidase [NAD(P)+] activity enablesIBAPANTHER:PTN001707453 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ptgr1Rat15-oxoprostaglandin 13-oxidase [NAD(P)+] activity enablesISOPTGR1 (Sus scrofa)1624291 PMID:11688989RGDPMID:11688989
Ptgr1Rat15-oxoprostaglandin 13-oxidase [NAD(P)+] activity enablesISOPTGR1 (Homo sapiens)1624291 PMID:25619643RGDPMID:25619643
Ptgr1Rat15-oxoprostaglandin 13-oxidase [NAD(P)+] activity enablesIEAUniProtKB:Q14914 and ensembl:ENSP000003857631600115GO_REF:0000107EnsemblGO_REF:0000107
Ptgr1Rat2-alkenal reductase (NADPH) activity enablesIDA 38501077PMID:11524419UniProt 
Ptgr1Rat2-alkenal reductase (NADPH) activity enablesISOPTGR1 (Homo sapiens)1624291 PMID:25619643RGDPMID:25619643
Ptgr1Rat2-alkenal reductase (NADPH) activity enablesIEAUniProtKB:Q14914 and ensembl:ENSP000003857631600115GO_REF:0000107EnsemblGO_REF:0000107
Ptgr1Ratleukotriene B4 12-hydroxy dehydrogenase activity enablesISSUniProtKB:Q290731600115GO_REF:0000024UniProtGO_REF:0000024
Ptgr1Ratleukotriene B4 12-hydroxy dehydrogenase activity enablesISOPTGR1 (Sus scrofa)1624291 PMID:8394361 and PMID:8576264RGDPMID:8394361 and PMID:8576264
Ptgr1Ratprotein binding enablesISOPTGR1 (Homo sapiens)1624291UniProtKB:Q8WXH2 and PMID:32814053RGDPMID:32814053
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Reference Title
Reference Citation
1. Plant Natural Products Calycosin and Gallic Acid Synergistically Attenuate Neutrophil Infiltration and Subsequent Injury in Isoproterenol-Induced Myocardial Infarction: A Possible Role for Leukotriene B4 12-Hydroxydehydrogenase? Cheng Y, etal., Oxid Med Cell Longev. 2015;2015:434052. doi: 10.1155/2015/434052. Epub 2015 Jul 21.
2. Antioxidative function and substrate specificity of NAD(P)H-dependent alkenal/one oxidoreductase. A new role for leukotriene B4 12-hydroxydehydrogenase/15-oxoprostaglandin 13-reductase. Dick RA, etal., J Biol Chem. 2001 Nov 2;276(44):40803-10. doi: 10.1074/jbc.M105487200. Epub 2001 Aug 27.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Isolation of cDNAs representing dithiolethione-responsive genes. Primiano T, etal., Carcinogenesis 1996 Nov;17(11):2297-303.
8. Identification of dithiolethione-inducible gene-1 as a leukotriene B4 12-hydroxydehydrogenase: implications for chemoprevention. Primiano T, etal., Carcinogenesis. 1998 Jun;19(6):999-1005. doi: 10.1093/carcin/19.6.999.
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Increased expression of prostaglandin reductase 1 in hepatocellular carcinomas from clinical cases and experimental tumors in rats. Sánchez-Rodríguez R, etal., Int J Biochem Cell Biol. 2014 Aug;53:186-94. doi: 10.1016/j.biocel.2014.05.017. Epub 2014 May 20.
12. Excessive leukotriene B4 in nucleus tractus solitarii is prohypertensive in spontaneously hypertensive rats. Waki H, etal., Hypertension. 2013 Jan;61(1):194-201. doi: 10.1161/HYPERTENSIONAHA.112.192252. Epub 2012 Nov 19.
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PMID:12477932   PMID:15489334   PMID:18500801   PMID:19056867   PMID:23376485   PMID:23878198   PMID:27867096  



Ptgr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8578,579,060 - 78,597,671 (-)NCBIGRCr8
mRatBN7.2573,784,000 - 73,802,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl573,784,009 - 73,802,666 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx575,685,300 - 75,703,919 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0577,506,913 - 77,525,540 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0577,479,071 - 77,497,693 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0576,110,746 - 76,129,361 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl576,110,738 - 76,129,441 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,255,192 - 80,273,709 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,010,809 - 77,029,326 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1577,015,922 - 77,034,439 (-)NCBI
Celera572,607,043 - 72,625,264 (-)NCBICelera
Cytogenetic Map5q24NCBI
PTGR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389111,549,722 - 111,599,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9111,549,722 - 111,599,893 (-)EnsemblGRCh38hg38GRCh38
GRCh379114,312,002 - 114,361,927 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369113,365,073 - 113,401,532 (-)NCBINCBI36Build 36hg18NCBI36
Build 349111,404,807 - 111,441,266NCBI
Celera984,811,079 - 84,861,206 (-)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef983,911,040 - 83,960,627 (-)NCBIHuRef
CHM1_19114,458,441 - 114,508,602 (-)NCBICHM1_1
T2T-CHM13v2.09123,721,096 - 123,771,025 (-)NCBIT2T-CHM13v2.0
Ptgr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39458,965,590 - 58,987,131 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl458,965,439 - 58,987,119 (-)EnsemblGRCm39 Ensembl
GRCm38458,965,590 - 58,987,131 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl458,965,439 - 58,987,119 (-)EnsemblGRCm38mm10GRCm38
MGSCv37458,978,462 - 58,999,950 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36459,059,644 - 59,081,132 (-)NCBIMGSCv36mm8
Celera458,878,602 - 58,900,216 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map432.36NCBI
Ptgr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541915,708,456 - 15,739,147 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541915,708,456 - 15,738,774 (+)NCBIChiLan1.0ChiLan1.0
PTGR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21127,816,183 - 27,860,132 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1927,824,016 - 27,862,494 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0982,700,541 - 82,739,024 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19110,862,122 - 110,900,829 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9110,848,804 - 110,900,829 (-)Ensemblpanpan1.1panPan2
PTGR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11166,191,155 - 66,212,075 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1166,191,165 - 66,209,219 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1164,601,934 - 64,622,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01167,324,103 - 67,345,145 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1167,324,105 - 67,345,298 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11165,841,533 - 65,862,116 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01165,864,869 - 65,885,860 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01166,554,733 - 66,575,785 (-)NCBIUU_Cfam_GSD_1.0
Ptgr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947181,503,868 - 181,535,213 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365591,731,533 - 1,762,671 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365591,731,346 - 1,762,676 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,373,282 - 252,395,948 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,373,272 - 252,395,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21283,170,868 - 283,177,809 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTGR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11227,918,990 - 27,999,736 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603514,779,257 - 14,799,467 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptgr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476023,406,085 - 23,433,283 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ptgr1
174 total Variants

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:17
Interacting mature miRNAs:18
Transcripts:ENSRNOT00000020335
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat

1 to 10 of 40 rows
RH137513  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2573,784,043 - 73,784,173 (+)MAPPERmRatBN7.2
Rnor_6.0576,110,785 - 76,110,914NCBIRnor6.0
Rnor_5.0580,255,224 - 80,255,353UniSTSRnor5.0
RGSC_v3.4577,010,841 - 77,010,970UniSTSRGSC3.4
Celera572,607,075 - 72,607,204UniSTS
Cytogenetic Map5q24UniSTS
BM386490  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2573,799,690 - 73,799,871 (+)MAPPERmRatBN7.2
Rnor_6.0576,126,429 - 76,126,609NCBIRnor6.0
Rnor_5.0580,270,777 - 80,270,957UniSTSRnor5.0
RGSC_v3.4577,026,394 - 77,026,574UniSTSRGSC3.4
Celera572,622,332 - 72,622,512UniSTS
RH 3.4 Map5506.3UniSTS
Cytogenetic Map5q24UniSTS
D19S409  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2573,798,118 - 73,799,022 (+)MAPPERmRatBN7.2
Rnor_6.0576,124,858 - 76,125,761NCBIRnor6.0
Rnor_5.0580,269,206 - 80,270,109UniSTSRnor5.0
RGSC_v3.4577,024,823 - 77,025,726UniSTSRGSC3.4
Celera572,620,761 - 72,621,664UniSTS
Cytogenetic Map5q24UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000020335   ⟹   ENSRNOP00000020335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl573,784,009 - 73,802,666 (-)Ensembl
Rnor_6.0 Ensembl576,110,738 - 76,129,441 (-)Ensembl
RefSeq Acc Id: NM_138863   ⟹   NP_620218
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,579,060 - 78,597,671 (-)NCBI
mRatBN7.2573,784,012 - 73,802,624 (-)NCBI
Rnor_6.0576,110,753 - 76,129,361 (-)NCBI
Rnor_5.0580,255,192 - 80,273,709 (-)NCBI
RGSC_v3.4577,010,809 - 77,029,326 (-)RGD
Celera572,607,043 - 72,625,264 (-)RGD
Sequence:
RefSeq Acc Id: XM_017593142   ⟹   XP_017448631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,579,067 - 78,596,042 (-)NCBI
mRatBN7.2573,784,000 - 73,800,996 (-)NCBI
Rnor_6.0576,110,746 - 76,127,712 (-)NCBI
Sequence:
Protein RefSeqs NP_620218 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448631 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB88912 (Get FASTA)   NCBI Sequence Viewer  
  AAH89775 (Get FASTA)   NCBI Sequence Viewer  
  EDL91647 (Get FASTA)   NCBI Sequence Viewer  
  EDL91648 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020335.6
GenBank Protein P97584 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620218   ⟸   NM_138863
- UniProtKB: Q5EBD3 (UniProtKB/Swiss-Prot),   P97584 (UniProtKB/Swiss-Prot),   A0A8L2QAI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448631   ⟸   XM_017593142
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QAI5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020335   ⟸   ENSRNOT00000020335
Enoyl reductase (ER)

Name Modeler Protein Id AA Range Protein Structure
AF-P97584-F1-model_v2 AlphaFold P97584 1-329 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13693766
Promoter ID:EPDNEW_R4291
Type:multiple initiation site
Name:Ptgr1_1
Description:prostaglandin reductase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0576,129,377 - 76,129,437EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-41164 BioCyc
BioCyc Pathway PWY3DJ-11470 [sphingosine and sphingosine-1-phosphate metabolism] BioCyc
BioCyc Pathway Image PWY3DJ-11470 BioCyc
Ensembl Genes ENSRNOG00000015072 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020335.7 UniProtKB/TrEMBL
Gene3D-CATH Medium-chain alcohol dehydrogenases, catalytic domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7307365 IMAGE-MGC_LOAD
InterPro ADH-like_C UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  ADH_N_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GroES-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MDR_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PKS_ER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTGR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:192227 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108590 IMAGE-MGC_LOAD
NCBI Gene 192227 ENTREZGENE
PANTHER PROSTAGLANDIN REDUCTASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR43205 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ADH_N_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ADH_zinc_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptgr1 PhenoGen
RatGTEx ENSRNOG00000015072 RatGTEx
SMART PKS_ER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50129 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2QAI5 ENTREZGENE, UniProtKB/TrEMBL
  P97584 ENTREZGENE, UniProtKB/Swiss-Prot
  Q5EBD3 ENTREZGENE
UniProt Secondary Q5EBD3 UniProtKB/Swiss-Prot
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-18 Ptgr1  prostaglandin reductase 1  Ltb4dh  leukotriene B4 12-hydroxydehydrogenase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Ltb4dh  leukotriene B4 12-hydroxydehydrogenase  Dig1  dithiolethione-inducible gene-1  Symbol and Name updated 1299863 APPROVED
2002-08-07 Dig1  dithiolethione-inducible gene-1      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_regulation greatly induced in liver by 1,2-dithiole-3-thione (D3T) 632607