Cyba (cytochrome b-245 alpha chain) - Rat Genome Database

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Gene: Cyba (cytochrome b-245 alpha chain) Rattus norvegicus
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Symbol: Cyba
Name: cytochrome b-245 alpha chain
RGD ID: 620573
Description: Contributes to superoxide-generating NAD(P)H oxidase activity. Involved in several processes, including cellular response to L-glutamine; cellular response to gamma radiation; and positive regulation of cell population proliferation. Located in several cellular components, including focal adhesion; perinuclear endoplasmic reticulum; and stress fiber. Part of NADPH oxidase complex. Used to study hypertension and pulmonary hypertension. Biomarker of diabetic retinopathy; end stage renal disease; hypertension; and myocardial infarction. Human ortholog(s) of this gene implicated in artery disease (multiple); asthma; chronic obstructive pulmonary disease; and phagocyte bactericidal dysfunction (multiple). Orthologous to human CYBA (cytochrome b-245 alpha chain); PARTICIPATES IN thyroid hormone biosynthetic pathway; Leishmaniasis pathway; phagocytosis pathway; INTERACTS WITH (R)-lipoic acid; 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha-subunit p22; cytochrome b(558) alpha chain; cytochrome b-245 light chain; cytochrome b-245, alpha polypeptide; cytochrome b558 alpha-subunit; cytochrome b558 subunit alpha; neutrophil cytochrome b 22 kDa polypeptide; p22 phagocyte B-cytochrome; p22-phox; p22phox; Phox; superoxide-generating NADPH oxidase light chain subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Cybaem1Mcwi ; CybamesSdi
Genetic Models: SS-Cybaem1Mcwi
Candidate Gene For: Eau8
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81967,396,143 - 67,404,214 (-)NCBIGRCr8
mRatBN7.21950,487,598 - 50,495,669 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,487,597 - 50,495,721 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1957,282,778 - 57,290,847 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,962,531 - 57,970,602 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,181,396 - 60,189,465 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01955,249,634 - 55,257,824 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,249,616 - 55,257,876 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,959,818 - 65,967,224 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,713,150 - 52,721,609 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11952,718,030 - 52,726,490 (-)NCBI
Celera1949,727,142 - 49,735,154 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
CybaRatacute lymphoblastic leukemia  ISORGD:73417411040545mRNA:increased expression:peripheral blood mononuclear cell:RGD 
CybaRatasthma susceptibilityISORGD:7341744311041DNA:polymorphism: :-930A>G (human)RGD 
CybaRatasthma susceptibilityISORGD:7341744772770DNA:SNPs: :-930A>G, 242C>T, 640A>G (human)RGD 
CybaRatchronic granulomatous disease  ISORGD:73417411040541DNA:nonsense,missense mutations:exons:35C>T, 98G>A,(p.Q3X,G24R)(human)RGD 
CybaRatchronic granulomatous disease  ISORGD:7341741600791autosomal recessive cytochrome b-negative CGD, OMIM:233690;DNA:missense mutation: :p.R90Q (human)RGD 
CybaRatchronic granulomatous disease  ISORGD:734174734861DNA:mutations:multiple (human)RGD 
CybaRatchronic obstructive pulmonary disease susceptibilityISORGD:7341744304108DNA:polymorphism: :p.H72Y (human)RGD 
CybaRatchronic obstructive pulmonary disease susceptibilityISORGD:7341744293707DNA:polymorphisms: :-930A>G, 242C>T (human)RGD 
CybaRatcoronary artery disease  ISORGD:7341741578443 RGD 
CybaRatCoronary Disease  ISORGD:7341741580275 RGD 
CybaRatDiabetic Nephropathies  ISORGD:7341748695982associated with Diabetes Mellitus, Type 2;DNA:SNP: :242C>T (human)RGD 
CybaRatdiabetic retinopathy  IEP 2317854associated with Diabetes Mellitus, ExperimentalRGD 
CybaRatend stage renal disease  IEP 2306994 RGD 
CybaRatEosinophilia  IAGP 11040542DNA:deletion:splice junction:RGD 
CybaRatExperimental Diabetes Mellitus  IEP 11040693mRNA:increased expression:pancreas:RGD 
CybaRatExperimental Diabetes Mellitus  IEP 2317852mRNA, protein:increased expression:aortaRGD 
CybaRathypertension  ISORGD:7341741580276 RGD 
CybaRathypertension  IEP 2317853protein:increased expression:kidney cortexRGD 
CybaRathypertension  IDA 4775206 RGD 
CybaRatMetabolic Syndrome  IEP 2317864 RGD 
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CybaRat16Q24.3 Microdeletion Syndrome  ISORGD:7341748554872ClinVar Annotator: match by term: 16q24.3 microdeletion syndromeClinVar 
CybaRatautoimmune polyendocrine syndrome type 1  ISORGD:7341748554872ClinVar Annotator: match by term: Polyglandular autoimmune syndrome, type 1ClinVarPMID:10914676|PMID:18546332|PMID:22924696|PMID:23910690|PMID:25741868|PMID:28492532|PMID:28941186|PMID:30470980|PMID:35140711|PMID:36606663
CybaRatautosomal recessive chronic granulomatous disease 4  ISORGD:7341748554872ClinVar Annotator: match by term: Granulomatous disease, chronic, autosomal recessive, cytochrome b-negativeClinVarPMID:10440830|PMID:10759707|PMID:10910929|PMID:10914676|PMID:12073015|PMID:1415254|PMID:16199547|PMID:16937026|PMID:17576681|PMID:1763037|PMID:18422995|PMID:18546332|PMID:19292887|PMID:19388116|PMID:19949658|PMID:20167518|PMID:20674832|PMID:21190454|PMID:22336310|PMID:2243141|PMID:22562447|PMID:22876374|PMID:22924696|PMID:23002911|PMID:23910690|PMID:25741868|PMID:26185101|PMID:26915675|PMID:26936803|PMID:27537055|PMID:27701760|PMID:27980538|PMID:28251166|PMID:28341171|PMID:28492532|PMID:28941186|PMID:29454792|PMID:29560547|PMID:30470980|PMID:30709874|PMID:30716179|PMID:31364312|PMID:31375816|PMID:31456102|PMID:31813112|PMID:32040803|PMID:32081864|PMID:33629196|PMID:3368442|PMID:33717137|PMID:34547651|PMID:35140711|PMID:3571224|PMID:35960392|PMID:36241643|PMID:36606663|PMID:4384563|PMID:8168815|PMID:9445163|PMID:9536098
CybaRatchronic granulomatous disease  ISORGD:7341748554872ClinVar Annotator: match by term: Chronic granulomatous diseaseClinVarPMID:10440830|PMID:10759707|PMID:10910929|PMID:10914676|PMID:1415254|PMID:16199547|PMID:17576681|PMID:1763037|PMID:18546332|PMID:19292887|PMID:19388116|PMID:19949658|PMID:20167518|PMID:20674832|PMID:21190454|PMID:22336310|PMID:2243141|PMID:22876374|PMID:22924696|PMID:23910690|PMID:25741868|PMID:26185101|PMID:26936803|PMID:27537055|PMID:27701760|PMID:28341171|PMID:28492532|PMID:28941186|PMID:29454792|PMID:30470980|PMID:30709874|PMID:31456102|PMID:31813112|PMID:31847883|PMID:32040803|PMID:32081864|PMID:3368442|PMID:33717137|PMID:34547651|PMID:35140711|PMID:35960392|PMID:36606663|PMID:8168815|PMID:9445163|PMID:9536098
CybaRatFanconi anemia  ISORGD:7341748554872ClinVar Annotator: match by term: Fanconi anemiaClinVarPMID:28492532
CybaRatgenetic disease  ISORGD:7341748554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
CybaRatinflammatory bowel disease  ISORGD:7341748554872ClinVar Annotator: match by term: Very early onset inflammatory bowel diseaseClinVarPMID:10440830|PMID:19388116|PMID:25741868|PMID:28492532|PMID:30709874|PMID:3368442|PMID:9445163
CybaRatKBG syndrome  ISORGD:7341748554872ClinVar Annotator: match by term: KBG syndromeClinVarPMID:21782149|PMID:25125236|PMID:25413698|PMID:25652421|PMID:28492532|PMID:31602316|PMID:31690835
CybaRatprimary ciliary dyskinesia 33  ISORGD:7341748554872ClinVar Annotator: match by term: Primary ciliary dyskinesia 33ClinVarPMID:28492532
CybaRatspermatogenic failure 31  ISORGD:7341748554872ClinVar Annotator: match by term: CYBA DEFICIENCYClinVarPMID:10440830|PMID:10910929|PMID:19388116|PMID:20167518|PMID:2243141|PMID:25741868|PMID:26185101|PMID:28492532|PMID:30709874|PMID:31364312|PMID:3368442|PMID:3571224|PMID:9445163
CybaRatX-linked chronic granulomatous disease  ISORGD:7341748554872ClinVar Annotator: match by term: Granulomatous disease, chronic, X-linkedClinVarPMID:28492532
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Original Reference(s)
CybaRatatherosclerosis  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:20720404
CybaRatautosomal recessive chronic granulomatous disease 4  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTD 
CybaRatchronic granulomatous disease  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:2243141
CybaRatend stage renal disease  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:19420110
CybaRatessential hypertension  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:34453990
CybaRatExperimental Diabetes Mellitus  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:11812764|PMID:12967931
CybaRatExperimental Liver Cirrhosis  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
CybaRatheart disease  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:16330681
CybaRatHepatomegaly  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:28108177
CybaRathypertension  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:16685210|PMID:17324946|PMID:20505675|PMID:32147540
CybaRatkidney failure  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:23325087
CybaRatliver cirrhosis  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:25226513
CybaRattype 2 diabetes mellitus  ISORGD:73417411554173CTD Direct Evidence: marker/mechanismCTDPMID:15531508
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CybaRatcoronary artery disease  ISORGD:7341741331525 GAD 
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CybaRatautosomal recessive chronic granulomatous disease 4  ISORGD:7341747240710 OMIM 

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CybaRat(1->4)-beta-D-glucan multiple interactionsISORGD:7341756480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of CYBA mRNACTDPMID:36331819
CybaRat(R)-lipoic acid multiple interactionsEXP 6480464Thioctic Acid inhibits the reaction [[colistinmethanesulfonic acid results in increased abundance of Colistin] which results more ...CTDPMID:33111558
CybaRat(R)-lipoic acid multiple interactionsISORGD:7341756480464Thioctic Acid inhibits the reaction [Bleomycin results in increased expression of CYBA mRNA]CTDPMID:35187969
CybaRat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionEXP 6480464o,p'-DDT results in increased expression of CYBA mRNACTDPMID:24096037
CybaRat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane multiple interactionsISORGD:7341746480464Quercetin inhibits the reaction [o,p'-DDT results in increased expression of CYBA mRNA]CTDPMID:35122929
CybaRat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionISORGD:7341746480464o,p'-DDT results in increased expression of CYBA mRNACTDPMID:35122929
CybaRat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionISORGD:7341756480464o,p'-DDT results in increased expression of CYBA mRNACTDPMID:24096037
CybaRat1,2-dimethylhydrazine increases expressionEXP 64804641,2-Dimethylhydrazine results in increased expression of CYBA mRNACTDPMID:32387197
CybaRat1,2-dimethylhydrazine increases expressionISORGD:73417564804641,2-Dimethylhydrazine results in increased expression of CYBA mRNACTDPMID:22206623
CybaRat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of CYBA mRNACTDPMID:25380136
CybaRat11-deoxycorticosterone increases expressionEXP 6480464Desoxycorticosterone results in increased expression of CYBA mRNA; Desoxycorticosterone results in increased expression of CYBA more ...CTDPMID:16271043
CybaRat11-deoxycorticosterone multiple interactionsEXP 6480464[Desoxycorticosterone co-treated with Sodium Chloride] results in increased expression of CYBA proteinCTDPMID:22431579
CybaRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of CYBA mRNACTDPMID:17557909|PMID:24096037
CybaRat17alpha-ethynylestradiol increases expressionISORGD:7341756480464Ethinyl Estradiol results in increased expression of CYBA mRNACTDPMID:17555576|PMID:17942748|PMID:24096037
CybaRat17beta-estradiol affects expressionISORGD:7341756480464Estradiol affects the expression of CYBA mRNACTDPMID:16195479|PMID:16684588
CybaRat17beta-estradiol decreases expressionISORGD:7341756480464Estradiol results in decreased expression of CYBA mRNACTDPMID:39298647
CybaRat17beta-estradiol multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of CYBA mRNACTDPMID:32741896
CybaRat17beta-estradiol increases expressionISORGD:7341746480464Estradiol results in increased expression of CYBA mRNACTDPMID:17121429|PMID:19167446
CybaRat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of CYBA mRNACTDPMID:32741896
CybaRat2,2'-Methylenebis(4-methyl-6-tert-butylphenol) multiple interactionsISORGD:7341746480464[CYP3A4 protein affects the susceptibility to 2,2'-methylenebis(4-methyl-6-tert-butylphenol)] which affects the expression of CYBA mRNACTDPMID:38160208

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Biological Process
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CybaRatcellular response to angiotensin  IEP 11040554 RGD 
CybaRatcellular response to gamma radiation  IEP 2317861 RGD 
CybaRatcellular response to glucose stimulus  IEP 11040556 RGD 
CybaRatcellular response to glucose stimulus  IEP 2317855 RGD 
CybaRatcellular response to L-glutamine  IEP 2291907 RGD 
CybaRatcellular response to mechanical stimulus  IEP 2317865 RGD 
CybaRatcellular response to phorbol 13-acetate 12-myristate  IEP 2291907 RGD 
CybaRatcellular response to tumor necrosis factor  IEP 2317868 RGD 
CybaRatcytochrome complex assembly involved_inIEAUniProtKB:P13498|ensembl:ENSP000002616231600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatcytochrome complex assembly involved_inISORGD:7341741624291 PMID:7938008RGDPMID:7938008
CybaRatestablishment of localization in cell acts_upstream_ofIEAUniProtKB:Q61462|ensembl:ENSMUSP000000176041600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatestablishment of localization in cell acts_upstream_ofISORGD:7341751624291MGI:3526726 PMID:24185898RGDPMID:24185898
CybaRathydrogen peroxide biosynthetic process involved_inIMP 2317869PMID:8798532BHF-UCL 
CybaRatinflammatory response involved_inIEAUniProtKB:P13498|ensembl:ENSP000002616231600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatinflammatory response involved_inISORGD:7341741624291 PMID:2243141RGDPMID:2243141
CybaRatinnate immune response involved_inISORGD:7341741624291 PMID:2243141RGDPMID:2243141
CybaRatinnate immune response involved_inIEAUniProtKB:Q61462|ensembl:ENSMUSP000000176041600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatinnate immune response involved_inIEAUniProtKB:P13498|ensembl:ENSP000002616231600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatinnate immune response involved_inISORGD:7341751624291 PMID:28351984RGDPMID:28351984
CybaRatinnate immune response involved_inISSUniProtKB:Q614621600115GO_REF:0000024UniProtGO_REF:0000024
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Cellular Component
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CybaRatapical plasma membrane  IDA 2317856 RGD 
CybaRatcytoplasm located_inIEAUniProtKB:Q61462|ensembl:ENSMUSP000000176041600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatcytoplasm located_inISORGD:7341751624291 PMID:15850784RGDPMID:15850784
CybaRatdendrite  IDA 1599676 RGD 
CybaRatendosome located_inIEAUniProtKB:Q61462|ensembl:ENSMUSP000000176041600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatendosome located_inISORGD:7341751624291 PMID:24185898RGDPMID:24185898
CybaRatfocal adhesion  IDA 11040550 RGD 
CybaRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
CybaRatNADPH oxidase complex  IDA 2291907 RGD 
CybaRatNADPH oxidase complex part_ofIEAUniProtKB:P13498|ensembl:ENSP000002616231600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatNADPH oxidase complex part_ofIEAUniProtKB:Q61462|ensembl:ENSMUSP000000176041600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatNADPH oxidase complex part_ofISORGD:7341751624291 PMID:24739962RGDPMID:24739962
CybaRatNADPH oxidase complex part_ofIBAMGI:1316658|PANTHER:PTN001032252|RGD:620573|UniProtKB:P134981600115GO_REF:0000033GO_CentralGO_REF:0000033
CybaRatNADPH oxidase complex part_ofISORGD:7341741624291 PMID:1763037, PMID:3305576, PMID:36241643, PMID:36413210, PMID:38355798RGDPMID:1763037|PMID:3305576|PMID:36241643|PMID:36413210|PMID:38355798
CybaRatNADPH oxidase complex part_ofIEAUniRule:UR0001684551600115GO_REF:0000104UniProtGO_REF:0000104
CybaRatNADPH oxidase complex located_inISORGD:7341741624291 PMID:22423966RGDPMID:22423966
CybaRatNADPH oxidase complex part_ofIMP 2317869PMID:8798532BHF-UCL 
CybaRatNADPH oxidase complex  IDA 1580287 RGD 
CybaRatneuronal cell body  IDA 1599676 RGD 
CybaRatperinuclear endoplasmic reticulum located_inIDA 632513 RGD 
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Molecular Function
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CybaRatelectron transfer activity enablesIEAUniProtKB:P13498|ensembl:ENSP000002616231600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatelectron transfer activity enablesISORGD:7341741624291 PMID:12042318RGDPMID:12042318
CybaRatheme binding enablesIEAInterPro:IPR0077321600115GO_REF:0000002InterProGO_REF:0000002
CybaRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
CybaRatmetal ion binding enablesIEAUniRule:UR0001684551600115GO_REF:0000104UniProtGO_REF:0000104
CybaRatoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
CybaRatprotein binding  IPIRGD:6205981580287 RGD 
CybaRatprotein binding enablesISORGD:7341741624291UniProtKB:P04839|UniProtKB:P05109|UniProtKB:P06702|UniProtKB:P14598|UniProtKB:P19878|UniProtKB:Q15080|UniProtKB:Q8NFA2|UniProtKB:Q8NFA2-3|UniProtKB:Q8VCM2|UniProtKB:Q9HBY0 PMID:11733522, PMID:15824103, PMID:16326715, PMID:16460309, PMID:17126813, PMID:17140397, PMID:17803994, PMID:22808130, PMID:23957209, PMID:3305576, PMID:35031518RGDPMID:11733522|PMID:15824103|PMID:16326715|PMID:16460309|PMID:17126813|PMID:17140397|PMID:17803994|PMID:22808130|PMID:23957209|PMID:3305576|PMID:35031518
CybaRatprotein binding enablesISORGD:7341751624291UniProtKB:O89032|UniProtKB:Q61093|UniProtKB:Q91Z40 PMID:19755709, PMID:21551061, PMID:24739962RGDPMID:19755709|PMID:21551061|PMID:24739962
CybaRatprotein binding  IPIRGD:130702211040550 RGD 
CybaRatprotein heterodimerization activity enablesISORGD:7341741624291UniProtKB:P04839 PMID:12042318RGDPMID:12042318
CybaRatprotein heterodimerization activity enablesIEAUniProtKB:P13498|ensembl:ENSP000002616231600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatSH3 domain binding enablesISORGD:7341741624291UniProtKB:P14598 PMID:7938008RGDPMID:7938008
CybaRatSH3 domain binding enablesIEAUniProtKB:P13498|ensembl:ENSP000002616231600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatsuperoxide-generating NAD(P)H oxidase activity contributes_toISORGD:7341741624291 PMID:1763037RGDPMID:1763037
CybaRatsuperoxide-generating NAD(P)H oxidase activity contributes_toIEAUniProtKB:P13498|ensembl:ENSP000002616231600115GO_REF:0000107EnsemblGO_REF:0000107
CybaRatsuperoxide-generating NAD(P)H oxidase activity contributes_toIMP 2317869PMID:8798532BHF-UCL 
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Imported Annotations - SMPDB

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CybaRatthyroid hormone biosynthetic pathway  ISORGD:73417410402751 SMPDBSMP:00716

Imported Annotations - KEGG (archival)

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CybaRatLeishmaniasis pathway  IEA 6907045 KEGGrno:05140
CybaRatphagocytosis pathway  IEA 6907045 KEGGrno:04145
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Source
Original Reference(s)
CybaRatabsent otoliths  IAGP 11040542DNA:deletion:splice junction:RGD 
CybaRatdecreased NAD(P)H oxidase activity  IAGP 11040542DNA:deletion:splice junction:RGD 

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Reference Title
Reference Citation
1. Direct interaction of the novel Nox proteins with p22phox is required for the formation of a functionally active NADPH oxidase. Ambasta RK, etal., J Biol Chem. 2004 Oct 29;279(44):45935-41. Epub 2004 Aug 18.
2. Coronary microvascular endothelial cell growth regulates expression of the gene encoding p22-phox. Bayraktutan U Free Radic Biol Med. 2005 Nov 15;39(10):1342-52. Epub 2005 Aug 29.
3. Nitric oxide synthase and NAD(P)H oxidase modulate coronary endothelial cell growth. Bayraktutan U J Mol Cell Cardiol. 2004 Feb;36(2):277-86.
4. Molecular characterization and localization of the NAD(P)H oxidase components gp91-phox and p22-phox in endothelial cells. Bayraktutan U, etal., Arterioscler Thromb Vasc Biol 2000 Aug;20(8):1903-11.
5. The genetic association database. Becker KG, etal., Nat Genet. 2004 May;36(5):431-2.
6. Expression of two temporally distinct microglia-related gene clusters after spinal cord injury. Byrnes KR, etal., Glia. 2006 Mar;53(4):420-33.
7. Inhibition of superoxide anion generation by CHS-111 via blockade of the p21-activated kinase, protein kinase B/Akt and protein kinase C signaling pathways in rat neutrophils. Chang LC, etal., Eur J Pharmacol. 2009 Aug 1;615(1-3):207-17. Epub 2009 May 13.
8. NIACIN AMELIORATES OXIDATIVE STRESS, INFLAMMATION, PROTEINURIA, AND HYPERTENSION IN RATS WITH CHRONIC RENAL FAILURE. Cho KH, etal., Am J Physiol Renal Physiol. 2009 May 6.
9. NADPH oxidase mediates radiation-induced oxidative stress in rat brain microvascular endothelial cells. Collins-Underwood JR, etal., Free Radic Biol Med. 2008 Sep 15;45(6):929-38. Epub 2008 Jun 30.
10. The role of NOX2 and "novel oxidases" in airway chemoreceptor O(2) sensing. Cutz E, etal., Adv Exp Med Biol. 2009;648:427-38.
11. Cytochrome b558-negative, autosomal recessive chronic granulomatous disease: two new mutations in the cytochrome b558 light chain of the NADPH oxidase (p22-phox). de Boer M, etal., Am J Hum Genet. 1992 Nov;51(5):1127-35.
12. Tumour necrosis factor alpha activates a p22phox-based NADH oxidase in vascular smooth muscle. De Keulenaer GW, etal., Biochem J. 1998 Feb 1;329 ( Pt 3):653-7.
13. Oxidative stress contributes to pulmonary hypertension in the transgenic (mRen2)27 rat. DeMarco VG, etal., Am J Physiol Heart Circ Physiol. 2008 Jun;294(6):H2659-68. Epub 2008 Apr 18.
14. Human neutrophil cytochrome b light chain (p22-phox). Gene structure, chromosomal location, and mutations in cytochrome-negative autosomal recessive chronic granulomatous disease. Dinauer MC, etal., J Clin Invest 1990 Nov;86(5):1729-37.
15. Expression of p22-phox and gp91-phox, essential components of NADPH oxidase, increases after myocardial infarction. Fukui T, etal., Biochem Biophys Res Commun. 2001 Mar;281(5):1200-6.
16. Cytochrome b-558 alpha-subunit cloning and expression in rat aortic smooth muscle cells. Fukui T, etal., Biochim Biophys Acta 1995 Oct 10;1231(3):215-9.
17. Role of kallistatin in prevention of cardiac remodeling after chronic myocardial infarction. Gao L, etal., Lab Invest. 2008 Nov;88(11):1157-66. Epub 2008 Sep 1.
18. The p22 phox A640G gene polymorphism but not the C242T gene variation is associated with coronary heart disease in younger individuals. Gardemann A, etal., Atherosclerosis. 1999 Aug;145(2):315-23.
19. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
20. Subcellular localization of nicotinamide adenine dinucleotide phosphate oxidase subunits in neurons and astroglia of the rat medial nucleus tractus solitarius: relationship with tyrosine hydroxylase immunoreactive neurons. Glass MJ, etal., Neuroscience. 2006 Dec 1;143(2):547-64. Epub 2006 Oct 4.
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PMID:1763037   PMID:3305576   PMID:7938008   PMID:12042318   PMID:14651853   PMID:15123630   PMID:15850784   PMID:15851618   PMID:16115038   PMID:17085464   PMID:17698723   PMID:19246278  
PMID:19805644   PMID:19946888   PMID:21419083   PMID:21429415   PMID:21691064   PMID:22423966   PMID:22873349   PMID:23446743   PMID:23585488   PMID:23624755   PMID:24185898   PMID:24580748  
PMID:24739962   PMID:26389812   PMID:27824157   PMID:28351984   PMID:28669019   PMID:31030942   PMID:35786680  



Cyba
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81967,396,143 - 67,404,214 (-)NCBIGRCr8
mRatBN7.21950,487,598 - 50,495,669 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,487,597 - 50,495,721 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1957,282,778 - 57,290,847 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,962,531 - 57,970,602 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,181,396 - 60,189,465 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01955,249,634 - 55,257,824 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,249,616 - 55,257,876 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,959,818 - 65,967,224 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,713,150 - 52,721,609 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11952,718,030 - 52,726,490 (-)NCBI
Celera1949,727,142 - 49,735,154 (-)NCBICelera
Cytogenetic Map19q12NCBI
CYBA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381688,643,289 - 88,651,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1688,643,275 - 88,651,083 (-)EnsemblGRCh38hg38GRCh38
GRCh371688,709,697 - 88,717,461 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361687,237,198 - 87,244,958 (-)NCBINCBI36Build 36hg18NCBI36
Build 341687,237,198 - 87,244,950NCBI
Celera1673,779,369 - 73,787,129 (-)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1674,403,728 - 74,411,523 (-)NCBIHuRef
CHM1_11690,120,999 - 90,128,842 (-)NCBICHM1_1
T2T-CHM13v2.01694,711,169 - 94,718,983 (-)NCBIT2T-CHM13v2.0
Cyba
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,151,510 - 123,159,679 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,151,515 - 123,159,669 (-)EnsemblGRCm39 Ensembl
GRCm388122,424,771 - 122,432,940 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,424,776 - 122,432,930 (-)EnsemblGRCm38mm10GRCm38
MGSCv378124,948,671 - 124,956,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368125,310,866 - 125,319,017 (-)NCBIMGSCv36mm8
Celera8126,653,882 - 126,662,049 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map871.04NCBI
LOC102004641
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,569,727 - 2,574,118 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555412,570,843 - 2,573,822 (-)NCBIChiLan1.0ChiLan1.0
LOC100986914
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21898,416,331 - 98,424,174 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116104,328,442 - 104,336,271 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01669,356,396 - 69,364,225 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11689,016,349 - 89,024,719 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1689,016,349 - 89,024,719 (-)Ensemblpanpan1.1panPan2
CYBA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1564,692,865 - 64,701,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl564,692,123 - 64,704,893 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha564,703,545 - 64,711,735 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0564,912,202 - 64,920,393 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl564,911,577 - 64,920,464 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1564,938,335 - 64,946,503 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0564,770,091 - 64,778,279 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,176,122 - 65,184,313 (+)NCBIUU_Cfam_GSD_1.0
LOC101967032
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,283,408 - 25,291,407 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366411,036,967 - 1,044,991 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366411,036,967 - 1,044,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYBA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,015,162 - 1,021,420 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,015,212 - 1,021,422 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CYBA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1574,023,134 - 74,030,793 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl574,023,082 - 74,030,750 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660471,654,155 - 1,661,751 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101717043
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746911,842 - 919,362 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746911,852 - 919,361 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Cyba
23 total Variants

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:106
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000017564
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat

1 to 10 of 10 rows
RH138637  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21950,487,946 - 50,488,149 (+)MAPPERmRatBN7.2
Rnor_6.01955,249,983 - 55,250,185NCBIRnor6.0
Rnor_5.01965,960,167 - 65,960,369UniSTSRnor5.0
RGSC_v3.41952,713,499 - 52,713,701UniSTSRGSC3.4
Celera1949,727,491 - 49,727,693UniSTS
RH 3.4 Map19696.9UniSTS
Cytogenetic Map19q12UniSTS
RH131095  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01965,967,927 - 65,968,109NCBIRnor5.0
Rnor_5.01149,620,644 - 149,620,826NCBIRnor5.0
RGSC_v3.41952,722,313 - 52,722,494UniSTSRGSC3.4
RGSC_v3.4X155,617,504 - 155,617,685UniSTSRGSC3.4
Celera1949,735,858 - 49,736,039UniSTS
Celera1133,317,703 - 133,317,884UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic MapXq37UniSTS


This gene Cyba is modified in the following models/strains:




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000017564   ⟹   ENSRNOP00000017564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,487,597 - 50,495,721 (-)Ensembl
Rnor_6.0 Ensembl1955,249,616 - 55,257,876 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109691   ⟹   ENSRNOP00000083515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,487,598 - 50,495,669 (-)Ensembl
RefSeq Acc Id: NM_024160   ⟹   NP_077074
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81967,396,143 - 67,404,214 (-)NCBI
mRatBN7.21950,487,598 - 50,495,669 (-)NCBI
Rnor_6.01955,249,634 - 55,257,824 (-)NCBI
Rnor_5.01965,959,818 - 65,967,224 (-)NCBI
RGSC_v3.41952,713,150 - 52,721,609 (-)RGD
Celera1949,727,142 - 49,735,154 (-)RGD
Sequence:
Protein RefSeqs NP_077074 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA85865 (Get FASTA)   NCBI Sequence Viewer  
  AAK00811 (Get FASTA)   NCBI Sequence Viewer  
  CAC09434 (Get FASTA)   NCBI Sequence Viewer  
  EDL92746 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017564
GenBank Protein Q62737 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_077074   ⟸   NM_024160
- UniProtKB: Q9ER27 (UniProtKB/Swiss-Prot),   Q62737 (UniProtKB/Swiss-Prot),   A6IZR8 (UniProtKB/TrEMBL),   A0A8L2Q8Y6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017564   ⟸   ENSRNOT00000017564
Ensembl Acc Id: ENSRNOP00000083515   ⟸   ENSRNOT00000109691

Name Modeler Protein Id AA Range Protein Structure
AF-Q62737-F1-model_v2 AlphaFold Q62737 1-192 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701205
Promoter ID:EPDNEW_R11728
Type:initiation region
Name:Cyba_1
Description:cytochrome b-245 alpha chain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01955,257,830 - 55,257,890EPDNEW


1 to 18 of 18 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-5398 BioCyc
Ensembl Genes ENSRNOG00000013014 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000017564 ENTREZGENE
InterPro Cyt_b558_asu UniProtKB/Swiss-Prot
KEGG Report rno:79129 UniProtKB/Swiss-Prot
NCBI Gene 79129 ENTREZGENE
PANTHER CYTOCHROME B-245 LIGHT CHAIN UniProtKB/Swiss-Prot
  PTHR15168 UniProtKB/Swiss-Prot
Pfam Cytochrom_B558a UniProtKB/Swiss-Prot
PhenoGen Cyba PhenoGen
PIRSF Cytochr_b558a UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000013014 RatGTEx
UniProt A0A8I5ZW01_RAT UniProtKB/TrEMBL
  A0A8L2Q8Y6 ENTREZGENE, UniProtKB/TrEMBL
  A6IZR8 ENTREZGENE, UniProtKB/TrEMBL
  CY24A_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9ER27 ENTREZGENE
UniProt Secondary Q9ER27 UniProtKB/Swiss-Prot
1 to 18 of 18 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Cyba  cytochrome b-245, alpha polypeptide    cytochrome b558 alpha-subunit  Name updated 1299863 APPROVED
2002-08-07 Cyba  cytochrome b558 alpha-subunit      Symbol and Name status set to provisional 70820 PROVISIONAL