Nes (nestin) - Rat Genome Database

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Gene: Nes (nestin) Rattus norvegicus
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Symbol: Nes
Name: nestin
RGD ID: 3162
Description: Enables CCR5 chemokine receptor binding activity. Involved in several processes, including positive regulation of intermediate filament depolymerization; positive regulation of neural precursor cell proliferation; and response to ionizing radiation. Located in intermediate filament. Biomarker of acute kidney failure; brain infarction; brain ischemia; and nephrosis. Orthologous to human NES (nestin); INTERACTS WITH 1,3-dinitrobenzene; 15-deoxy-Delta(12,14)-prostaglandin J2; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100910255; nestin-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82175,735,715 - 175,745,631 (+)NCBIGRCr8
mRatBN7.22173,437,867 - 173,447,777 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,438,734 - 173,447,777 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,583,526 - 180,592,569 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,605,885 - 178,614,928 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,205,949 - 173,214,992 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,343,109 - 187,352,972 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,344,056 - 187,352,969 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02206,746,885 - 206,755,989 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,051,907 - 180,060,947 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,002,012 - 180,011,053 (+)NCBI
Celera2167,386,159 - 167,395,202 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
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Reference
Notes
Source
Original Reference(s)
NesRatacute kidney failure  IEP 11570523 RGD 
NesRatbrain infarction  IEP 1642069associated with HypertensionRGD 
NesRatbrain ischemia  IEP 1642071protein:increased expression:hippocampusRGD 
NesRatChronic Periodontitis  ISONES (Homo sapiens)6480655mRNA:decreased expression:gingival tissues (human)RGD 
NesRatKidney Reperfusion Injury  IEP 11570523 RGD 
NesRatnephrosis  IEP 1642072mRNA and protein:increased expression:glomerulusRGD 
NesRatReperfusion Injury  IEP 1642074protein:increased expression:cerebral cortexRGD 
Object Symbol
Species
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Original Reference(s)
NesRatCharcot-Marie-Tooth disease type 2  ISONES (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 2ClinVarPMID:18585512 more ...
NesRatcongenital fibrosis of the extraocular muscles  ISONES (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital fibrosis of extraocular musclesClinVarPMID:25741868
NesRatgastrointestinal stromal tumor  ISONES (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
NesRatimmunodeficiency 42  ISONES (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiencyClinVarPMID:28492532
NesRatMHC class II deficiency  ISONES (Homo sapiens)8554872ClinVar Annotator: match by term: MHC class II deficiencyClinVarPMID:28492532
NesRatparathyroid carcinoma  ISONES (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
NesRatsevere congenital neutropenia 3  ISONES (Homo sapiens)8554872ClinVar Annotator: match by term: Kostmann syndromeClinVarPMID:28492532
NesRatsevere congenital neutropenia 5  ISONES (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital neutropenia-myelofibrosis-nephromegaly syndromeClinVarPMID:28492532
Object Symbol
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Original Reference(s)
NesRatepilepsy with generalized tonic-clonic seizures  ISONES (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16137769
NesRatnephrosis  ISONES (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16418842

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Object Symbol
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Original Reference(s)
NesRat1,3-dinitrobenzene affects expressionEXP 64804643-dinitrobenzene affects the expression of NES mRNACTDPMID:24140754
NesRat15-deoxy-Delta(12,14)-prostaglandin J2 increases expressionEXP 648046415-deoxy-delta(12 and 14)-prostaglandin J2 results in increased expression of NES proteinCTDPMID:15212945
NesRat17alpha-ethynylestradiol increases expressionISONes (Mus musculus)6480464Ethinyl Estradiol results in increased expression of NES mRNACTDPMID:17942748
NesRat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of NES mRNACTDPMID:29097150
NesRat17alpha-ethynylestradiol multiple interactionsISONes (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NES mRNACTDPMID:17942748
NesRat17beta-estradiol increases expressionISONES (Homo sapiens)6480464Estradiol results in increased expression of NES mRNA and Estradiol results in increased expression of NES proteinCTDPMID:27271280
NesRat17beta-estradiol multiple interactionsISONES (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of NES mRNACTDPMID:30165855
NesRat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISONES (Homo sapiens)64804642 more ...CTDPMID:31326446
NesRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISONes (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of NES mRNACTDPMID:17942748 and PMID:28922406
NesRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of NES mRNACTDPMID:34747641
NesRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISONes (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NES mRNACTDPMID:17942748
NesRat2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642 more ...CTDPMID:32109520
NesRat2,6-dimethyl-4-tridecylmorpholine increases expressionISONes (Mus musculus)6480464tridemorph results in increased expression of NES mRNACTDPMID:34737147
NesRat2-butoxyethanol increases expressionISONes (Mus musculus)6480464n-butoxyethanol results in increased expression of NES mRNACTDPMID:19812364
NesRat3,3',5,5'-tetrabromobisphenol A increases expressionISONES (Homo sapiens)6480464tetrabromobisphenol A results in increased expression of NES mRNACTDPMID:31326446
NesRat3,5,6-trichloro-2-pyridinol affects expressionISONes (Mus musculus)64804643 more ...CTDPMID:25137620
NesRat3,5,6-trichloro-2-pyridinol increases expressionISONes (Mus musculus)64804643 more ...CTDPMID:23220036
NesRat3,5,6-trichloro-2-pyridinol decreases expressionISONes (Mus musculus)64804643 more ...CTDPMID:23220036
NesRat3,5,6-trichloropyridine-2-one decreases expressionISONes (Mus musculus)64804643 more ...CTDPMID:23220036
NesRat3,5,6-trichloropyridine-2-one affects expressionISONes (Mus musculus)64804643 more ...CTDPMID:25137620

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Biological Process
1 to 20 of 23 rows

  
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Original Reference(s)
NesRatbrain development involved_inISSUniProtKB:P868391600115GO_REF:0000024UniProtGO_REF:0000024
NesRatcell projection morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q6P5H2 and ensembl:ENSMUSP000000884931600115GO_REF:0000107EnsemblGO_REF:0000107
NesRatcell projection morphogenesis acts_upstream_of_or_withinISONes (Mus musculus)1624291 PMID:16571784RGDPMID:16571784
NesRatembryonic camera-type eye development involved_inISSUniProtKB:P868391600115GO_REF:0000024UniProtGO_REF:0000024
NesRatG2/M transition of mitotic cell cycle involved_inISONES (Homo sapiens)1624291 PMID:19384922RGDPMID:19384922
NesRatG2/M transition of mitotic cell cycle involved_inIEAUniProtKB:P48681 and ensembl:ENSP000003572061600115GO_REF:0000107EnsemblGO_REF:0000107
NesRatnegative regulation of catalytic activity involved_inISONES (Homo sapiens)1624291 PMID:21185309RGDPMID:21185309
NesRatnegative regulation of neuron apoptotic process acts_upstream_of_or_withinIEAUniProtKB:Q6P5H2 and ensembl:ENSMUSP000000884931600115GO_REF:0000107EnsemblGO_REF:0000107
NesRatnegative regulation of neuron apoptotic process acts_upstream_of_or_withinISONes (Mus musculus)1624291MGI:3844224 PMID:20963821RGDPMID:20963821
NesRatnervous system development involved_inIEAUniProtKB-KW:KW-05241600115GO_REF:0000043UniProtGO_REF:0000043
NesRatnervous system development acts_upstream_of_or_withinISONes (Mus musculus)1624291 PMID:12687705RGDPMID:12687705
NesRatnervous system development acts_upstream_of_or_withinIEAUniProtKB:Q6P5H2 and ensembl:ENSMUSP000000884931600115GO_REF:0000107EnsemblGO_REF:0000107
NesRatneuron apoptotic process acts_upstream_ofISONes (Mus musculus)1624291MGI:3844224 PMID:20963821RGDPMID:20963821
NesRatneuron apoptotic process acts_upstream_ofIEAUniProtKB:Q6P5H2 and ensembl:ENSMUSP000000884931600115GO_REF:0000107EnsemblGO_REF:0000107
NesRatneuron differentiation  NAS 633502 RGD 
NesRatpositive regulation of intermediate filament depolymerization involved_inIDA 633505PMID:12686602UniProt 
NesRatpositive regulation of intermediate filament depolymerization involved_inIBAPANTHER:PTN002931631 and Nes (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
NesRatpositive regulation of neural precursor cell proliferation involved_inIMP 8554576PMID:20510364UniProt 
NesRatresponse to ionizing radiation  IEP 1642076 RGD 
NesRatresponse to nutrient levels  IEP 1642068 RGD 
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Cellular Component
1 to 11 of 11 rows

  
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Original Reference(s)
NesRatcytoplasm located_inIEAUniProtKB:Q6P5H2 and ensembl:ENSMUSP000000884931600115GO_REF:0000107EnsemblGO_REF:0000107
NesRatcytoplasm located_inIEAUniProtKB:P48681 and ensembl:ENSP000003572061600115GO_REF:0000107EnsemblGO_REF:0000107
NesRatcytoplasm located_inISONes (Mus musculus)1624291 PMID:14706696 more ...RGDPMID:14706696 more ...
NesRatcytoplasm located_inISONES (Homo sapiens)1624291 PMID:19384922RGDPMID:19384922
NesRatintermediate filament  IDA 632375 RGD 
NesRatintermediate filament located_inISONes (Mus musculus)1624291 PMID:9364068RGDPMID:9364068
NesRatintermediate filament is_active_inIBAMGI:101784 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
NesRatintermediate filament located_inIEAUniProtKB-KW:KW-04031600115GO_REF:0000043UniProtGO_REF:0000043
NesRatintermediate filament located_inIEAUniProtKB:Q6P5H2 and ensembl:ENSMUSP000000884931600115GO_REF:0000107EnsemblGO_REF:0000107
NesRatintermediate filament cytoskeleton located_inISONES (Homo sapiens)1624291 RGDGO_REF:0000052
NesRatintermediate filament cytoskeleton located_inIEAUniProtKB:P48681 and ensembl:ENSP000003572061600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function

  
Object Symbol
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Original Reference(s)
NesRatCCR5 chemokine receptor binding  IPICcr5 (Rattus norvegicus)4889986 RGD 
NesRatCCR5 chemokine receptor binding enablesIBAPANTHER:PTN002931631 and Nes (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
NesRatintermediate filament binding enablesIEAInterPro:IPR0312111600115GO_REF:0000002InterProGO_REF:0000002
NesRatintermediate filament binding enablesISSUniProtKB:Q9Z1Q11600115GO_REF:0000024UniProtGO_REF:0000024
NesRatprotein binding enablesISONES (Homo sapiens)1624291UniProtKB:P08670 more ...RGDPMID:26496610 more ...
NesRatprotein binding enablesISONes (Mus musculus)1624291PR:P48432 PMID:23447615RGDPMID:23447615


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#
Reference Title
Reference Citation
1. Altered gene expression in leukocyte transendothelial migration and cell communication pathways in periodontitis-affected gingival tissues. Abe D, etal., J Periodontal Res. 2011 Jun;46(3):345-53. doi: 10.1111/j.1600-0765.2011.01349.x. Epub 2011 Mar 7.
2. Altered pancreatic morphology in the offspring of pregnant rats given reduced dietary protein is time and gender specific. Chamson-Reig A, etal., J Endocrinol. 2006 Oct;191(1):83-92.
3. Nestin promotes the phosphorylation-dependent disassembly of vimentin intermediate filaments during mitosis. Chou YH, etal., Mol Biol Cell 2003 Apr;14(4):1468-78.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. [EphB2-Fc promotes activation of endogenous neural stem cells after cerebral cortex infarction: experimental with hypertensive rats] He YD, etal., Zhonghua Yi Xue Za Zhi. 2005 Sep 7;85(34):2395-9.
7. Desipramine activated Bcl-2 expression and inhibited lipopolysaccharide-induced apoptosis in hippocampus-derived adult neural stem cells. Huang YY, etal., J Pharmacol Sci. 2007 May;104(1):61-72.
8. Nestin immunoreactivity in local neurons of the adult rat striatum after remote cortical injury. Kuroda T, etal., J Chem Neuroanat 2002 Jul;24(2):137-46.
9. CNS stem cells express a new class of intermediate filament protein. Lendahl U, etal., Cell 1990 Feb 23;60(4):585-95.
10. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
11. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
12. Chemokines released from astrocytes promote chemokine receptor 5-mediated neuronal cell differentiation. Park MH, etal., Exp Cell Res. 2009 Oct 1;315(16):2715-26. Epub 2009 Jun 24.
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Comprehensive gene review and curation RGD comprehensive gene curation
16. Cdk5 regulates the organization of Nestin and its association with p35. Sahlgren CM, etal., Mol Cell Biol 2003 Jul;23(14):5090-106.
17. Nestin expression persists in astrocytes of organotypic slice cultures from rat cortex. Schmidt-Kastner R and Humpel C, Int J Dev Neurosci 2002 Feb;20(1):29-38.
18. Enhancement of nestin protein-immunoreactivity induced by ionizing radiation in the forebrain ependymal regions of rats. Shi M, etal., Neurosci Res. 2002 Dec;44(4):475-81.
19. [Neuroprotective effects of exogenous basic fibroblast growth factor on the hypoxic-ischemic brain damage of neonatal rats] Sun JQ, etal., Zhonghua Er Ke Za Zhi. 2007 May;45(5):354-9.
20. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
1 to 20 of 24 rows
PMID:9364068   PMID:9917366   PMID:12107504   PMID:12687705   PMID:12819359   PMID:14706696   PMID:15145750   PMID:15206826   PMID:15293228   PMID:15526158   PMID:15677762   PMID:15966898  
PMID:16230517   PMID:16571784   PMID:16612832   PMID:16856331   PMID:16949759   PMID:16997483   PMID:17429339   PMID:17671844   PMID:17784648   PMID:17901127   PMID:17916630   PMID:18377259  
PMID:18439098   PMID:18614158   PMID:18805450   PMID:18851944   PMID:18941770   PMID:19013217   PMID:19036983   PMID:19241870   PMID:19245830   PMID:19306852   PMID:19384922   PMID:19409199  
PMID:19451150   PMID:19468198   PMID:19562035   PMID:19679743   PMID:19704967   PMID:19723548   PMID:20153393   PMID:20617137   PMID:20945344   PMID:20963821   PMID:21139996   PMID:21185309  
PMID:21679183   PMID:21906524   PMID:21993267   PMID:22038821   PMID:22185478   PMID:23000950   PMID:23236886   PMID:23250576   PMID:23319587   PMID:23447615   PMID:23611784   PMID:23855824  
PMID:23938193   PMID:23979707   PMID:24657285   PMID:24915827   PMID:25139503   PMID:26574905   PMID:26699726   PMID:27439108   PMID:28358926   PMID:28448522   PMID:29359828   PMID:30883593  
PMID:31841640   PMID:32654195   PMID:32714078   PMID:32910393   PMID:32950539   PMID:36690826   PMID:37934159  



Nes
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82175,735,715 - 175,745,631 (+)NCBIGRCr8
mRatBN7.22173,437,867 - 173,447,777 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,438,734 - 173,447,777 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,583,526 - 180,592,569 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,605,885 - 178,614,928 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,205,949 - 173,214,992 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,343,109 - 187,352,972 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,344,056 - 187,352,969 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02206,746,885 - 206,755,989 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,051,907 - 180,060,947 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,002,012 - 180,011,053 (+)NCBI
Celera2167,386,159 - 167,395,202 (+)NCBICelera
Cytogenetic Map2q34NCBI
NES
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,668,763 - 156,677,407 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,668,763 - 156,677,407 (-)EnsemblGRCh38hg38GRCh38
GRCh371156,638,555 - 156,647,199 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,905,179 - 154,913,813 (-)NCBINCBI36Build 36hg18NCBI36
Build 341153,451,630 - 153,460,262NCBI
Celera1129,709,369 - 129,718,003 (-)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1127,996,154 - 128,004,788 (-)NCBIHuRef
CHM1_11158,034,765 - 158,043,399 (-)NCBICHM1_1
T2T-CHM13v2.01155,805,165 - 155,813,809 (-)NCBIT2T-CHM13v2.0
Nes
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39387,878,400 - 87,887,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl387,878,385 - 87,887,758 (+)EnsemblGRCm39 Ensembl
GRCm38387,971,093 - 87,980,451 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl387,971,078 - 87,980,451 (+)EnsemblGRCm38mm10GRCm38
MGSCv37387,775,015 - 87,784,373 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,057,020 - 88,066,378 (+)NCBIMGSCv36mm8
Celera388,008,485 - 88,017,845 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.78NCBI
Nes
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,748,078 - 2,756,301 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,748,132 - 2,756,595 (-)NCBIChiLan1.0ChiLan1.0
NES
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,167,229 - 93,175,869 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1192,901,730 - 92,910,368 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01132,012,273 - 132,020,907 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,835,456 - 135,844,094 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,835,456 - 135,844,094 (-)Ensemblpanpan1.1panPan2
NES
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,296,395 - 41,305,641 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,295,989 - 41,303,736 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha740,783,666 - 40,792,924 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,159,499 - 41,168,749 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,160,198 - 41,168,746 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1740,941,448 - 40,950,698 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0740,994,447 - 41,003,699 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,278,086 - 41,287,336 (+)NCBIUU_Cfam_GSD_1.0
Nes
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,807,567 - 26,817,174 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,837,936 - 5,847,020 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,837,949 - 5,847,499 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NES
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,412,247 - 93,421,893 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,412,660 - 93,421,899 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24101,984,527 - 101,993,772 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NES
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,185,208 - 7,193,964 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,185,390 - 7,193,983 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,480,916 - 6,489,509 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nes
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,837,926 - 1,844,895 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,837,614 - 1,845,029 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Nes
25 total Variants

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:99
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000025314, ENSRNOT00000025384
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 73 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat

1 to 10 of 73 rows
AA166324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22173,446,921 - 173,447,055 (+)MAPPERmRatBN7.2
Rnor_6.02184,908,098 - 184,908,231NCBIRnor6.0
Rnor_6.02187,352,117 - 187,352,250NCBIRnor6.0
Rnor_5.02204,299,171 - 204,299,304UniSTSRnor5.0
Rnor_5.02206,755,134 - 206,755,267UniSTSRnor5.0
RGSC_v3.42180,060,095 - 180,060,228UniSTSRGSC3.4
Celera2167,394,347 - 167,394,480UniSTS
Cytogenetic Map2q34UniSTS
RH131466  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22173,447,453 - 173,447,672 (+)MAPPERmRatBN7.2
Rnor_6.02187,352,649 - 187,352,867NCBIRnor6.0
Rnor_5.02206,755,666 - 206,755,884UniSTSRnor5.0
RGSC_v3.42180,060,627 - 180,060,845UniSTSRGSC3.4
Celera2167,394,879 - 167,395,097UniSTS
RH 3.4 Map21130.7UniSTS
Cytogenetic Map2q34UniSTS
UniSTS:497298  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22173,442,457 - 173,443,090 (+)MAPPERmRatBN7.2
Rnor_6.02187,347,653 - 187,348,285NCBIRnor6.0
Rnor_6.02184,903,634 - 184,904,266NCBIRnor6.0
Rnor_5.02204,294,707 - 204,295,339UniSTSRnor5.0
Rnor_5.02206,750,670 - 206,751,302UniSTSRnor5.0
RGSC_v3.42180,055,631 - 180,056,263UniSTSRGSC3.4
Celera2167,389,883 - 167,390,515UniSTS
Cytogenetic Map2q34UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 87 86 55 25 55 6 214 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000025314   ⟹   ENSRNOP00000025314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2173,438,734 - 173,447,777 (+)Ensembl
Rnor_6.0 Ensembl2187,344,056 - 187,352,568 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000025384   ⟹   ENSRNOP00000025384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2173,442,222 - 173,447,373 (+)Ensembl
Rnor_6.0 Ensembl2187,347,602 - 187,352,969 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100350   ⟹   ENSRNOP00000089157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2173,438,734 - 173,447,373 (+)Ensembl
RefSeq Acc Id: NM_001308239   ⟹   NP_001295168
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82175,736,588 - 175,745,631 (+)NCBI
mRatBN7.22173,438,734 - 173,447,777 (+)NCBI
Rnor_6.02187,343,929 - 187,352,972 (+)NCBI
Celera2167,386,159 - 167,395,202 (+)NCBI
Sequence:
RefSeq Acc Id: NM_012987   ⟹   NP_037119
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82175,736,588 - 175,745,631 (+)NCBI
mRatBN7.22173,438,734 - 173,447,777 (+)NCBI
Rnor_6.02187,343,929 - 187,352,972 (+)NCBI
Rnor_5.02206,746,885 - 206,755,989 (+)NCBI
RGSC_v3.42180,051,907 - 180,060,947 (+)RGD
Celera2167,386,159 - 167,395,202 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590648   ⟹   XP_017446137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82175,735,715 - 175,745,631 (+)NCBI
mRatBN7.22173,437,867 - 173,447,777 (+)NCBI
Rnor_6.02187,343,109 - 187,352,972 (+)NCBI
Sequence:
RefSeq Acc Id: NP_037119   ⟸   NM_012987
- Peptide Label: isoform 2
- UniProtKB: A0A8I6ABC1 (UniProtKB/TrEMBL),   A6J640 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001295168   ⟸   NM_001308239
- Peptide Label: isoform 1
- UniProtKB: Q8CJ14 (UniProtKB/Swiss-Prot),   P21263 (UniProtKB/Swiss-Prot),   G3V8F8 (UniProtKB/TrEMBL),   A6J639 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446137   ⟸   XM_017590648
- Peptide Label: isoform X1
- UniProtKB: Q8CJ14 (UniProtKB/Swiss-Prot),   P21263 (UniProtKB/Swiss-Prot),   G3V8F8 (UniProtKB/TrEMBL),   A6J639 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025384   ⟸   ENSRNOT00000025384
Ensembl Acc Id: ENSRNOP00000025314   ⟸   ENSRNOT00000025314
IF rod

Name Modeler Protein Id AA Range Protein Structure
AF-P21263-F1-model_v2 AlphaFold P21263 1-1893 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 29 of 29 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-52524 BioCyc
Ensembl Genes ENSRNOG00000018681 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000025384 ENTREZGENE
  ENSRNOT00000100350 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
  Vasodilator-stimulated phosphoprotein UniProtKB/Swiss-Prot
InterPro IF_conserved UniProtKB/Swiss-Prot
  IF_rod_dom UniProtKB/Swiss-Prot
  Nestin UniProtKB/Swiss-Prot
NCBI Gene 25491 ENTREZGENE
PANTHER NESTIN UniProtKB/Swiss-Prot
  PTHR47051 UniProtKB/Swiss-Prot
Pfam Filament UniProtKB/Swiss-Prot
PhenoGen Nes PhenoGen
PROSITE IF_ROD_1 UniProtKB/Swiss-Prot
  IF_ROD_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018681 RatGTEx
SMART Filament UniProtKB/Swiss-Prot
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/Swiss-Prot
TIGR TC205473
UniProt A0A8I6ABC1 ENTREZGENE, UniProtKB/TrEMBL
  A6J639 ENTREZGENE, UniProtKB/TrEMBL
  A6J640 ENTREZGENE, UniProtKB/TrEMBL
  A6J641_RAT UniProtKB/TrEMBL
  D3ZWJ2_RAT UniProtKB/TrEMBL
  G3V8F8 ENTREZGENE, UniProtKB/TrEMBL
  NEST_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q8CJ14 ENTREZGENE
UniProt Secondary Q8CJ14 UniProtKB/Swiss-Prot
1 to 29 of 29 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Nes  nestin  LOC100910255  nestin-like  Data merged from RGD:6499605 737654 PROVISIONAL
2012-07-05 LOC100910255  nestin-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Nes  Nestin      Symbol and Name status set to approved 70586 APPROVED