Adra1b (adrenoceptor alpha 1B) - Rat Genome Database

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Gene: Adra1b (adrenoceptor alpha 1B) Rattus norvegicus
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Symbol: Adra1b
Name: adrenoceptor alpha 1B
RGD ID: 2054
Description: Enables alpha1-adrenergic receptor activity. Involved in several processes, including positive regulation of cytosolic calcium ion concentration; response to estrogen; and response to steroid hormone. Acts upstream of or within negative regulation of Rho protein signal transduction. Located in T-tubule and intercalated disc. Biomarker of polycystic ovary syndrome. Orthologous to human ADRA1B (adrenoceptor alpha 1B); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; calcium/calcium-mediated signaling pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adrenergic alpha 1B receptor; Adrenergic alpha 1B- receptor; adrenergic receptor, alpha 1b; adrenergic, alpha 1B, receptor; Adrenergic, alpha 1B-, receptor; adrenergic, alpha-1B-, receptor; alpha 1B-adrenoceptor; alpha 1B-adrenoreceptor; alpha-1B adrenergic receptor; alpha-1B adrenoceptor; alpha-1B adrenoreceptor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,756,461 - 28,874,831 (-)NCBIGRCr8
mRatBN7.21028,255,025 - 28,373,418 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,255,025 - 28,312,919 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1033,014,641 - 33,072,459 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0101,553,026 - 1,610,850 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01027,985,197 - 28,043,019 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,392,762 - 29,450,644 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,392,762 - 29,450,644 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01029,233,972 - 29,291,344 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41028,889,092 - 28,946,889 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11028,890,140 - 28,947,938 (-)NCBI
Celera1027,744,674 - 27,802,198 (-)NCBICelera
Cytogenetic Map10q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
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Evidence
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Reference
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Original Reference(s)
Adra1bRatCardiomegaly  ISOADRA1B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11278430 and PMID:11940550
Adra1bRatExperimental Liver Cirrhosis  ISOADRA1B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Adra1bRatHypotension  ISOADRA1B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11278430
Adra1bRatkidney disease  ISOADRA1B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18257748
Adra1bRatNerve Degeneration  ISOADRA1B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12871582
Adra1bRattoxic encephalopathy  ISOADRA1B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19125850

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Original Reference(s)
Adra1bRat(+)-pilocarpine increases response to substanceISOAdra1b (Mus musculus)6480464ADRA1B protein results in increased susceptibility to PilocarpineCTDPMID:19125850
Adra1bRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of ADRA1B mRNA]CTDPMID:31150632
Adra1bRat(-)-epigallocatechin 3-gallate multiple interactionsISOADRA1B (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of ADRA1B mRNACTDPMID:22079256
Adra1bRat(R)-adrenaline multiple interactionsISOADRA1B (Homo sapiens)6480464[Epinephrine binds to and results in increased activity of ADRA1B protein] which results in increased abundance of Calcium more ...CTDPMID:15306222 and PMID:20030735
Adra1bRat(R)-adrenaline increases activityISOADRA1B (Homo sapiens)6480464Epinephrine results in increased activity of ADRA1B proteinCTDPMID:15306222
Adra1bRat(R)-noradrenaline multiple interactionsISOADRA1B (Homo sapiens)6480464[Norepinephrine binds to and results in increased activity of ADRA1B protein] which results in increased abundance of Calcium more ...CTDPMID:20030735
Adra1bRat(S)-amphetamine increases response to substanceISOAdra1b (Mus musculus)6480464ADRA1B gene results in increased susceptibility to DextroamphetamineCTDPMID:14556232
Adra1bRat1,2-dichloroethane increases expressionISOAdra1b (Mus musculus)6480464ethylene dichloride results in increased expression of ADRA1B mRNACTDPMID:28960355
Adra1bRat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of ADRA1B mRNACTDPMID:25380136
Adra1bRat17beta-estradiol multiple interactionsEXP 6480464Estradiol promotes the reaction [ADRA1B protein results in increased susceptibility to Phenylephrine]CTDPMID:18480251
Adra1bRat17beta-estradiol decreases expressionISOAdra1b (Mus musculus)6480464Estradiol results in decreased expression of ADRA1B mRNACTDPMID:39298647
Adra1bRat17beta-estradiol multiple interactionsISOADRA1B (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of ADRA1B mRNACTDPMID:30165855
Adra1bRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of ADRA1B mRNA and Estradiol results in increased expression of ADRA1B proteinCTDPMID:18480251
Adra1bRat1D-myo-inositol 1,4,5-trisphosphate increases abundanceISOADRA1B (Homo sapiens)6480464ADRA1B protein results in increased abundance of Inositol 1 more ...CTDPMID:9570190
Adra1bRat1D-myo-inositol 1,4,5-trisphosphate increases metabolic processingISOAdra1b (Mus musculus)6480464ADRA1B protein results in increased metabolism of Inositol 1 more ...CTDPMID:11278430
Adra1bRat1D-myo-inositol 1,4,5-trisphosphate multiple interactionsISOADRA1B (Homo sapiens)6480464[Quinidine co-treated with Verapamil] inhibits the reaction [ADRA1B protein results in increased abundance of Inositol 1 more ...CTDPMID:9570190
Adra1bRat2,2',5,5'-tetrachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:23829299
Adra1bRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ADRA1B mRNACTDPMID:21215274 and PMID:32109520
Adra1bRat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of ADRA1B mRNACTDPMID:21346803
Adra1bRat2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile multiple interactionsISOADRA1B (Homo sapiens)6480464[Quinidine co-treated with Verapamil] inhibits the reaction [ADRA1B protein results in increased abundance of Inositol 1 more ...CTDPMID:9570190

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Biological Process
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Original Reference(s)
Adra1bRatadenylate cyclase-activating adrenergic receptor signaling pathway involved_inIBAPANTHER:PTN001205212 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Adra1bRatadrenergic receptor signaling pathway involved_inIEAGO:00049371600115GO_REF:0000108GOCGO_REF:0000108
Adra1bRatadrenergic receptor signaling pathway involved_inIEAGO:00049351600115GO_REF:0000108GOCGO_REF:0000108
Adra1bRatadult heart development acts_upstream_of_or_withinISOAdra1b (Mus musculus)1624291MGI:104773 PMID:12782680RGDPMID:12782680
Adra1bRatbehavioral response to cocaine acts_upstream_of_or_withinISOAdra1b (Mus musculus)1624291MGI:2148638 PMID:11923452RGDPMID:11923452
Adra1bRatblood vessel remodeling acts_upstream_of_or_withinISOAdra1b (Mus musculus)1624291MGI:2148638 PMID:15231500RGDPMID:15231500
Adra1bRatcell growth involved in cardiac muscle cell development acts_upstream_of_or_withinISOAdra1b (Mus musculus)1624291MGI:104773 PMID:12782680RGDPMID:12782680
Adra1bRatcell-cell signaling involved_inIBAMGI:104773 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Adra1bRatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Adra1bRatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Adra1bRatglucose homeostasis acts_upstream_of_or_withinISOAdra1b (Mus musculus)1624291MGI:2148638 PMID:14581480RGDPMID:14581480
Adra1bRatglycogen catabolic process acts_upstream_ofISOAdra1b (Mus musculus)1624291MGI:2148638 PMID:14581480RGDPMID:14581480
Adra1bRatlocomotory behavior acts_upstream_of_or_withinISOAdra1b (Mus musculus)1624291MGI:2148638 PMID:11222061RGDPMID:11222061
Adra1bRatnegative regulation of glycogen catabolic process acts_upstream_of_or_withinISOAdra1b (Mus musculus)1624291MGI:2148638 PMID:14581480RGDPMID:14581480
Adra1bRatnegative regulation of Rho protein signal transduction acts_upstream_of_or_withinIMP 8554725PMID:18332105MGI 
Adra1bRatneuron-glial cell signaling involved_inISOAdra1b (Mus musculus)1624291UniProtKB:P97714 more ...RGDPMID:10493741
Adra1bRatorgan growth acts_upstream_of_or_withinISOAdra1b (Mus musculus)1624291MGI:104773 PMID:12782680RGDPMID:12782680
Adra1bRatphospholipase C-activating G protein-coupled receptor signaling pathway involved_inIBAMGI:104773 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Adra1bRatpositive regulation of cytosolic calcium ion concentration  IDA 634393 RGD 
Adra1bRatpositive regulation of cytosolic calcium ion concentration involved_inIBAPANTHER:PTN001545550 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Cellular Component
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Original Reference(s)
Adra1bRatcaveola located_inIEAUniProtKB-SubCell:SL-00351600115GO_REF:0000044UniProtGO_REF:0000044
Adra1bRatcytoplasm located_inISSUniProtKB:P353681600115GO_REF:0000024UniProtGO_REF:0000024
Adra1bRatcytoplasm located_inIEAUniProtKB:P35368 and ensembl:ENSP000003066621600115GO_REF:0000107EnsemblGO_REF:0000107
Adra1bRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Adra1bRatcytoplasm located_inISOADRA1B (Homo sapiens)1624291 PMID:24567387RGDPMID:24567387
Adra1bRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Adra1bRatintercalated disc  IDA 5688343 RGD 
Adra1bRatmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Adra1bRatmembrane located_inISOAdra1b (Mus musculus)1624291 PMID:11923452RGDPMID:11923452
Adra1bRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Adra1bRatnuclear membrane located_inISOADRA1B (Homo sapiens)1624291 PMID:22120526RGDPMID:22120526
Adra1bRatnuclear membrane located_inIEAUniProtKB:P35368 and ensembl:ENSP000003066621600115GO_REF:0000107EnsemblGO_REF:0000107
Adra1bRatnuclear membrane located_inISSUniProtKB:P353681600115GO_REF:0000024UniProtGO_REF:0000024
Adra1bRatnuclear membrane located_inIEAUniProtKB-SubCell:SL-01821600115GO_REF:0000044UniProtGO_REF:0000044
Adra1bRatnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Adra1bRatnucleus located_inIEAUniProtKB:P35368 and ensembl:ENSP000003066621600115GO_REF:0000107EnsemblGO_REF:0000107
Adra1bRatnucleus located_inISOADRA1B (Homo sapiens)1624291 PMID:22120526RGDPMID:22120526
Adra1bRatnucleus located_inISSUniProtKB:P353681600115GO_REF:0000024UniProtGO_REF:0000024
Adra1bRatplasma membrane located_inISOADRA1B (Homo sapiens)1624291 PMID:24567387RGDGO_REF:0000052 and PMID:24567387
Adra1bRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
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Molecular Function
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RGD Manual Annotations


  
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Original Reference(s)
Adra1bRatG protein mediated signaling pathway via Galphaq family  ISS 1559318 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
Adra1bRatcalcium/calcium-mediated signaling pathway   IEA 6907045 KEGGrno:04020

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#
Reference Title
Reference Citation
1. Impaired glucose homeostasis in mice lacking the alpha1b-adrenergic receptor subtype. Burcelin R, etal., J Biol Chem. 2004 Jan 9;279(2):1108-15. Epub 2003 Oct 27.
2. Effects of castration and of testosterone replacement on alpha(1)-adrenoceptor subtypes in the rat vas deferens. Campos M, etal., Eur J Pharmacol. 2003 Jun 20;471(2):149-55.
3. Adrenaline (via alpha(1B)-adrenoceptors) and ethanol stimulate OH* radical production in isolated rat hepatocytes. Castrejon-Sosa M, etal., Life Sci. 2002 Oct 11;71(21):2469-74.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Circadian-related heteromerization of adrenergic and dopamine D4 receptors modulates melatonin synthesis and release in the pineal gland. González S, etal., PLoS Biol. 2012;10(6):e1001347. doi: 10.1371/journal.pbio.1001347. Epub 2012 Jun 19.
7. Cell surface expression of alpha1D-adrenergic receptors is controlled by heterodimerization with alpha1B-adrenergic receptors. Hague C, etal., J Biol Chem. 2004 Apr 9;279(15):15541-9. Epub 2004 Jan 21.
8. Modulation of intracellular Ca(2+) via alpha(1B)-adrenoreceptor signaling molecules, G alpha(h) (transglutaminase II) and phospholipase C-delta 1. Kang SK, etal., Biochem Biophys Res Commun 2002 Apr 26;293(1):383-90.
9. Nandrolone treatment decreases the alpha1B-adrenoceptor mRNA level in rat kidney, but not the density of alpha1B-adrenoceptors in cultured MDCK-D1 kidney cells. Lindblom J, etal., Eur J Pharmacol. 2005 Dec 19;527(1-3):157-62. Epub 2005 Nov 23.
10. Molecular cloning and expression of the cDNA for the alpha 1A-adrenergic receptor. The gene for which is located on human chromosome 5. Lomasney JW, etal., J Biol Chem 1991 Apr 5;266(10):6365-9.
11. Ovarian expression of alpha (1)- and beta (2)-adrenoceptors and p75 neurotrophin receptors in rats with steroid-induced polycystic ovaries. Manni L, etal., Auton Neurosci. 2005 Mar 31;118(1-2):79-87.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. Interaction of alpha1-adrenoceptor subtypes with different G proteins induces opposite effects on cardiac L-type Ca2+ channel. O-Uchi J, etal., Circ Res. 2008 Jun 6;102(11):1378-88. Epub 2008 May 8.
15. MURC, a muscle-restricted coiled-coil protein that modulates the Rho/ROCK pathway, induces cardiac dysfunction and conduction disturbance. Ogata T, etal., Mol Cell Biol. 2008 May;28(10):3424-36. doi: 10.1128/MCB.02186-07. Epub 2008 Mar 10.
16. Alpha-1B adrenoceptors mediate neurogenic constriction in mesenteric arteries of normotensive and DOCA-salt hypertensive mice. Perez-Rivera AA, etal., Auton Neurosci. 2005 Aug 31;121(1-2):64-73.
17. Alpha1-adrenergic receptors: new insights and directions. Piascik MT and Perez DM, J Pharmacol Exp Ther. 2001 Aug;298(2):403-10.
18. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
19. Functional interactions between estrogen and insulin-like growth factor-I in the regulation of alpha 1B-adrenoceptors and female reproductive function. Quesada A and Etgen AM, J Neurosci. 2002 Mar 15;22(6):2401-8.
20. GOA pipeline RGD automated data pipeline
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PMID:7911220   PMID:7989580   PMID:8406017   PMID:9326654   PMID:10409668   PMID:10493741   PMID:11222061   PMID:11923452   PMID:12184796   PMID:12595294   PMID:12782680   PMID:12871582  
PMID:12880866   PMID:15174080   PMID:15231500   PMID:15793568   PMID:16026926   PMID:16308429   PMID:17915215   PMID:17936747   PMID:18204069   PMID:18246093   PMID:18297111   PMID:18336813  
PMID:19120133   PMID:19302553   PMID:20882287   PMID:21958220   PMID:22120526   PMID:22302710   PMID:24567387   PMID:25283507   PMID:25630693   PMID:25775528   PMID:27923787   PMID:29229557  
PMID:29624247   PMID:34062902  



Adra1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,756,461 - 28,874,831 (-)NCBIGRCr8
mRatBN7.21028,255,025 - 28,373,418 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,255,025 - 28,312,919 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1033,014,641 - 33,072,459 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0101,553,026 - 1,610,850 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01027,985,197 - 28,043,019 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,392,762 - 29,450,644 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,392,762 - 29,450,644 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01029,233,972 - 29,291,344 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41028,889,092 - 28,946,889 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11028,890,140 - 28,947,938 (-)NCBI
Celera1027,744,674 - 27,802,198 (-)NCBICelera
Cytogenetic Map10q21NCBI
ADRA1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385159,865,086 - 159,989,205 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5159,865,080 - 159,973,012 (+)EnsemblGRCh38hg38GRCh38
GRCh375159,343,489 - 159,400,019 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365159,276,318 - 159,332,595 (+)NCBINCBI36Build 36hg18NCBI36
Build 345159,276,317 - 159,332,129NCBI
Celera5155,374,535 - 155,430,824 (+)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5154,438,201 - 154,494,477 (+)NCBIHuRef
CHM1_15158,776,756 - 158,833,023 (+)NCBICHM1_1
T2T-CHM13v2.05160,393,464 - 160,517,778 (+)NCBIT2T-CHM13v2.0
Adra1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,665,432 - 43,792,076 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,665,433 - 43,792,037 (-)EnsemblGRCm39 Ensembl
GRCm381143,774,605 - 43,901,250 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,774,606 - 43,901,210 (-)EnsemblGRCm38mm10GRCm38
MGSCv371143,588,108 - 43,649,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361143,618,029 - 43,679,755 (-)NCBIMGSCv36mm8
Celera1148,401,465 - 48,463,919 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.81NCBI
Adra1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540813,883,574 - 13,937,709 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540813,883,574 - 13,937,798 (+)NCBIChiLan1.0ChiLan1.0
ADRA1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24155,101,569 - 155,158,235 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15153,241,121 - 153,297,783 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05155,307,148 - 155,363,785 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15161,923,708 - 161,954,901 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5161,923,895 - 161,979,461 (+)Ensemblpanpan1.1panPan2
ADRA1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1450,676,816 - 50,724,999 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl450,677,255 - 50,724,999 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha450,570,905 - 50,619,105 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0451,111,625 - 51,159,868 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl451,111,625 - 51,159,868 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1450,919,759 - 50,967,913 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0451,043,059 - 51,091,264 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0451,563,698 - 51,612,138 (-)NCBIUU_Cfam_GSD_1.0
Adra1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213105,074,452 - 105,123,271 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365153,523,797 - 3,572,596 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365153,523,799 - 3,572,467 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADRA1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1663,550,130 - 63,603,034 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11663,550,123 - 64,010,838 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21669,039,634 - 69,092,211 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADRA1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12362,281,500 - 62,338,290 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603415,270,198 - 15,333,460 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adra1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473329,545,789 - 29,662,028 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473329,545,870 - 29,661,954 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Adra1b
750 total Variants

1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat

1 to 10 of 45 rows
D10Wox8  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map10298.61UniSTS
RH 3.4 Map10298.61RGD
RH 2.0 Map10367.3RGD
Cytogenetic Map10q21UniSTS
RH133503  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21028,255,057 - 28,255,254 (+)MAPPERmRatBN7.2
Rnor_6.01029,392,795 - 29,392,991NCBIRnor6.0
Rnor_5.01029,234,005 - 29,234,201UniSTSRnor5.0
RGSC_v3.41028,889,125 - 28,889,321UniSTSRGSC3.4
Celera1027,744,707 - 27,744,903UniSTS
RH 3.4 Map10296.7UniSTS
Cytogenetic Map10q21UniSTS
PMC150908P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01029,449,417 - 29,450,205NCBIRnor6.0
Rnor_5.01029,290,117 - 29,290,905UniSTSRnor5.0
RGSC_v3.41028,945,662 - 28,946,450UniSTSRGSC3.4
Cytogenetic Map10q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 11 49 113 90 89 59 24 59 6 216 96 93 45 60 30



Ensembl Acc Id: ENSRNOT00000087937   ⟹   ENSRNOP00000073309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1028,255,025 - 28,312,919 (-)Ensembl
Rnor_6.0 Ensembl1029,392,762 - 29,450,644 (-)Ensembl
RefSeq Acc Id: NM_016991   ⟹   NP_058687
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81028,756,461 - 28,814,347 (-)NCBI
mRatBN7.21028,255,025 - 28,312,919 (-)NCBI
Rnor_6.01029,392,762 - 29,450,644 (-)NCBI
Rnor_5.01029,233,972 - 29,291,344 (-)NCBI
RGSC_v3.41028,889,092 - 28,946,889 (-)RGD
Celera1027,744,674 - 27,802,198 (-)RGD
Sequence:
RefSeq Acc Id: XM_039085165   ⟹   XP_038941093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81028,756,461 - 28,874,831 (-)NCBI
mRatBN7.21028,255,025 - 28,373,418 (-)NCBI
RefSeq Acc Id: XM_063268387   ⟹   XP_063124457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81028,757,484 - 28,874,831 (-)NCBI
RefSeq Acc Id: XM_063268388   ⟹   XP_063124458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81028,795,424 - 28,874,831 (-)NCBI
RefSeq Acc Id: NP_058687   ⟸   NM_016991
- UniProtKB: Q63215 (UniProtKB/Swiss-Prot),   P15823 (UniProtKB/Swiss-Prot),   Q6IRH4 (UniProtKB/TrEMBL),   A0A0G2K564 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073309   ⟸   ENSRNOT00000087937
RefSeq Acc Id: XP_038941093   ⟸   XM_039085165
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124457   ⟸   XM_063268387
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063124458   ⟸   XM_063268388
- Peptide Label: isoform X2
Name Modeler Protein Id AA Range Protein Structure
AF-P15823-F1-model_v2 AlphaFold P15823 1-515 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13697119
Promoter ID:EPDNEW_R7643
Type:single initiation site
Name:Adra1b_1
Description:adrenoceptor alpha 1B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01029,450,685 - 29,450,745EPDNEW


1 to 29 of 29 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-25438 BioCyc
Ensembl Genes ENSRNOG00000060087 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000087937 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7105608 IMAGE-MGC_LOAD
InterPro ADR_fam UniProtKB/Swiss-Prot
  ADRA1B_rcpt UniProtKB/Swiss-Prot
  GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
MGC_CLONE MGC:91757 IMAGE-MGC_LOAD
NCBI Gene 24173 ENTREZGENE
PANTHER ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot
  PTHR24248:SF17 UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PhenoGen Adra1b PhenoGen
PRINTS ADRENERGICR UniProtKB/Swiss-Prot
  ADRENRGCA1BR UniProtKB/Swiss-Prot
  GPCRRHODOPSN UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000060087 RatGTEx
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt A0A0G2K564 ENTREZGENE
  A6HDN8_RAT UniProtKB/TrEMBL
  ADA1B_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q63215 ENTREZGENE
  Q6IRH4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q63215 UniProtKB/Swiss-Prot
1 to 29 of 29 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-13 Adra1b  adrenoceptor alpha 1B  Adra1b  adrenergic, alpha-1B-, receptor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Adra1b  adrenergic, alpha-1B-, receptor  Adra1b  adrenergic receptor, alpha 1b  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2003-04-09 Adra1b  adrenergic receptor, alpha 1b    adrenergic, alpha 1B, receptor  Name updated 629478 APPROVED
2002-06-10 Adra1b  adrenergic, alpha 1B, receptor      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_physical_interaction associates with G proteins that activate a phosphatidylinositol- calcium second messenger system 61489
gene_process mediates blood pressure and aorta contractile responses induced by alpha-1 agonists