Acadl (acyl-CoA dehydrogenase, long chain) - Rat Genome Database

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Gene: Acadl (acyl-CoA dehydrogenase, long chain) Rattus norvegicus
Analyze
Symbol: Acadl
Name: acyl-CoA dehydrogenase, long chain
RGD ID: 2011
Description: Enables flavin adenine dinucleotide binding activity; long-chain fatty acyl-CoA dehydrogenase activity; and protein homodimerization activity. Involved in fatty acid beta-oxidation using acyl-CoA dehydrogenase and long-chain fatty acid catabolic process. Located in mitochondrial matrix and mitochondrial membrane. Orthologous to human ACADL (acyl-CoA dehydrogenase long chain); PARTICIPATES IN fatty acid beta degradation pathway; 3-hydroxyacyl-CoA dehydrogenase deficiency pathway; carnitine palmitoyltransferase I deficiency pathway; INTERACTS WITH (+)-schisandrin B; (R)-lipoic acid; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: acetyl-Coenzyme A dehydrogenase, long-chain; ACOADA; Acyl Coenzyme A dehydrogenase long chain; Acyl Coenzyme A dehydrogenase, long chain; acyl-Coenzyme A dehydrogenase, long-chain; LCAD; LCAD long chain acyl-CoA dehydrogenase; LCAD, long chain acyl-CoA dehydrogenase; long-chain acyl-CoA dehydrogenase; long-chain specific acyl-CoA dehydrogenase, mitochondrial
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8975,783,689 - 75,822,077 (-)NCBIGRCr8
mRatBN7.2968,333,981 - 68,372,149 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl968,333,980 - 68,372,220 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx976,823,956 - 76,861,404 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0981,952,887 - 81,990,335 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0980,351,815 - 80,389,588 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0973,833,368 - 73,871,857 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,833,388 - 73,871,888 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0973,434,371 - 73,472,895 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4965,613,130 - 65,651,775 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1965,760,111 - 65,798,754 (-)NCBI
Celera965,813,263 - 65,851,320 (-)NCBICelera
RH 3.4 Map9612.99RGD
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
AcadlRatLong-Chain 3-hydroxyacyl-CoA Dehydrogenase Deficiency  ISOACADL (Homo sapiens)8554872ClinVar Annotator: match by term: Long chain acyl-CoA dehydrogenase deficiencyClinVarPMID:25741868
AcadlRatNeurodevelopmental Disorders  ISOACADL (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
AcadlRatprimary pulmonary hypertension  ISOACADL (Homo sapiens)8554872ClinVar Annotator: match by term: Primary pulmonary hypertensionClinVarPMID:28492532 and PMID:31727138
AcadlRattrichorhinophalangeal syndrome type I  ISOACADL (Homo sapiens)8554872ClinVar Annotator: match by term: Trichorhinophalangeal dysplasia type IClinVarPMID:25741868
AcadlRatvery long chain acyl-CoA dehydrogenase deficiency  ISOACADL (Homo sapiens)8554872ClinVar Annotator: match by term: Very long chain acyl-CoA dehydrogenase deficiencyClinVar 
Object Symbol
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Original Reference(s)
AcadlRatbasal cell carcinoma  ISOACADL (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:36428691
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Original Reference(s)
AcadlRatvery long chain acyl-CoA dehydrogenase deficiency  ISSAcadl (Mus musculus)13592920OMIM:201475MouseDO 

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Object Symbol
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Original Reference(s)
AcadlRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of ACADL mRNA]CTDPMID:31150632
AcadlRat(1->4)-beta-D-glucan multiple interactionsISOAcadl (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of ACADL mRNACTDPMID:36331819
AcadlRat(R)-lipoic acid multiple interactionsEXP 6480464Thioctic Acid inhibits the reaction [Dietary Fats results in decreased expression of ACADL mRNA]CTDPMID:22464149
AcadlRat1,2-dimethylhydrazine decreases expressionISOAcadl (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of ACADL mRNACTDPMID:22206623
AcadlRat1,2-dimethylhydrazine multiple interactionsISOAcadl (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of ACADL mRNACTDPMID:22206623
AcadlRat17alpha-ethynylestradiol increases expressionISOAcadl (Mus musculus)6480464Ethinyl Estradiol results in increased expression of ACADL mRNACTDPMID:17942748
AcadlRat17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with Testosterone] results in increased expression of ACADL mRNACTDPMID:11375906
AcadlRat17beta-estradiol increases expressionISOAcadl (Mus musculus)6480464Estradiol results in increased expression of ACADL mRNACTDPMID:39298647
AcadlRat17beta-estradiol decreases expressionISOAcadl (Mus musculus)6480464Estradiol results in decreased expression of ACADL mRNACTDPMID:19484750
AcadlRat17beta-hydroxy-5alpha-androstan-3-one increases expressionISOACADL (Homo sapiens)6480464Dihydrotestosterone results in increased expression of ACADL mRNACTDPMID:29581250
AcadlRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOACADL (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of ACADL mRNACTDPMID:20106945
AcadlRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of ACADL mRNACTDPMID:34747641
AcadlRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOACADL (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of ACADL mRNACTDPMID:21296121
AcadlRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOAcadl (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to ACADL promoter]CTDPMID:19654925
AcadlRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ACADL mRNACTDPMID:11752688
AcadlRat3,3',4,4'-tetrachlorobiphenyl multiple interactionsISOAcadl (Mus musculus)64804643 more ...CTDPMID:19467301
AcadlRat4,4'-sulfonyldiphenol increases expressionISOAcadl (Mus musculus)6480464bisphenol S results in increased expression of ACADL mRNACTDPMID:39298647
AcadlRat5-fluorouracil increases expressionISOACADL (Homo sapiens)6480464Fluorouracil results in increased expression of ACADL proteinCTDPMID:15585135 and PMID:16803524
AcadlRat5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole affects expressionEXP 6480464Omeprazole affects the expression of ACADL mRNACTDPMID:19483382
AcadlRat6-propyl-2-thiouracil affects expressionEXP 6480464Propylthiouracil affects the expression of ACADL mRNACTDPMID:19483382

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Biological Process
1 to 20 of 21 rows

  
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Original Reference(s)
AcadlRatcarboxylic acid catabolic process involved_inIEAARBA:ARBA000278821600115GO_REF:0000117UniProtGO_REF:0000117
AcadlRatcarnitine catabolic process involved_inISOAcadl (Mus musculus)1624291 PMID:9861014RGDPMID:9861014
AcadlRatcarnitine metabolic process, CoA-linked involved_inIBAMGI:87866 and PANTHER:PTN0008569531600115GO_REF:0000033GO_CentralGO_REF:0000033
AcadlRatcarnitine metabolic process, CoA-linked involved_inISOAcadl (Mus musculus)1624291 PMID:9861014RGDPMID:9861014
AcadlRatfatty acid beta-oxidation using acyl-CoA dehydrogenase  IDA 2317678 RGD 
AcadlRatfatty acid beta-oxidation using acyl-CoA dehydrogenase involved_inIBAMGI:87866 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AcadlRatfatty acid beta-oxidation using acyl-CoA dehydrogenase involved_inISOAcadl (Mus musculus)1624291 PMID:15639194 and PMID:9861014RGDPMID:15639194 and PMID:9861014
AcadlRatfatty acid catabolic process acts_upstream_of_or_withinISOAcadl (Mus musculus)1624291 PMID:21151927RGDPMID:21151927
AcadlRatfatty acid metabolic process involved_inIEAUniProtKB-KW:KW-02761600115GO_REF:0000043UniProtGO_REF:0000043
AcadlRatlipid catabolic process involved_inISOAcadl (Mus musculus)1624291 PMID:9861014RGDPMID:9861014
AcadlRatlipid metabolic process involved_inIEAUniProtKB-KW:KW-04431600115GO_REF:0000043UniProtGO_REF:0000043
AcadlRatlong-chain fatty acid catabolic process  IDA 2317678 RGD 
AcadlRatlong-chain fatty acid catabolic process involved_inIBAPANTHER:PTN000856953 and Acadl (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
AcadlRatlong-chain fatty acid catabolic process involved_inIEAInterPro:IPR0341791600115GO_REF:0000002InterProGO_REF:0000002
AcadlRatnegative regulation of fatty acid biosynthetic process involved_inISOAcadl (Mus musculus)1624291 PMID:15639194RGDPMID:15639194
AcadlRatnegative regulation of fatty acid oxidation involved_inISOAcadl (Mus musculus)1624291 PMID:15639194RGDPMID:15639194
AcadlRatpositive regulation of cold-induced thermogenesis involved_inISSUniProtKB:P5117413673745PMID:9802886YuBioLab 
AcadlRatpositive regulation of cold-induced thermogenesis involved_inISOAcadl (Mus musculus)1624291 PMID:9802886RGDPMID:9802886
AcadlRatregulation of cholesterol metabolic process involved_inISOAcadl (Mus musculus)1624291 PMID:15639194RGDPMID:15639194
AcadlRatresponse to cold acts_upstream_of_or_withinISOAcadl (Mus musculus)1624291 PMID:21151927RGDPMID:21151927
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Cellular Component
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Original Reference(s)
AcadlRatcytoplasm is_active_inIBAFB:FBgn0035811 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AcadlRatcytoplasm located_inIEAARBA:ARBA000269711600115GO_REF:0000117UniProtGO_REF:0000117
AcadlRatintracellular membrane-bounded organelle located_inIEAARBA:ARBA000290851600115GO_REF:0000117UniProtGO_REF:0000117
AcadlRatmitochondrial matrix located_inIEAUniProtKB-SubCell:SL-01701600115GO_REF:0000044UniProtGO_REF:0000044
AcadlRatmitochondrial matrix located_inIDA 8553446PMID:3813556BHF-UCL 
AcadlRatmitochondrial membrane located_inIDA 8553446PMID:3813556BHF-UCL 
AcadlRatmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
AcadlRatmitochondrion located_inISOAcadl (Mus musculus)1624291 PMID:26767982RGDPMID:26767982
AcadlRatmitochondrion is_active_inIBAMGI:87866 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Molecular Function
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Original Reference(s)
AcadlRatacyl-CoA dehydrogenase activity enablesIEAInterPro:IPR0060891600115GO_REF:0000002InterProGO_REF:0000002
AcadlRatflavin adenine dinucleotide binding  IDA 2317678 RGD 
AcadlRatflavin adenine dinucleotide binding enablesIBAPANTHER:PTN000098409 and Acadl (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
AcadlRatflavin adenine dinucleotide binding enablesIEAInterPro:IPR013786 and InterPro:IPR0370691600115GO_REF:0000002InterProGO_REF:0000002
AcadlRatlong-chain fatty acyl-CoA dehydrogenase activity  IDA 2317678 RGD 
AcadlRatlong-chain fatty acyl-CoA dehydrogenase activity enablesIEAUniProtKB:P28330 and ensembl:ENSP000002337101600115GO_REF:0000107EnsemblGO_REF:0000107
AcadlRatlong-chain fatty acyl-CoA dehydrogenase activity enablesIBAMGI:87866 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AcadlRatlong-chain fatty acyl-CoA dehydrogenase activity enablesISOAcadl (Mus musculus)1624291 PMID:9861014RGDPMID:9861014
AcadlRatlong-chain fatty acyl-CoA dehydrogenase activity enablesIEARHEA:177211600115GO_REF:0000116RHEAGO_REF:0000116
AcadlRatlong-chain fatty acyl-CoA dehydrogenase activity enablesIEAEC:1.3.8.81600115GO_REF:0000003UniProtGO_REF:0000003
AcadlRatlong-chain fatty acyl-CoA dehydrogenase activity enablesISOACADL (Homo sapiens)1624291 PMID:1945557RGDPMID:1945557
AcadlRatlong-chain fatty acyl-CoA dehydrogenase activity enablesIEAInterPro:IPR0341791600115GO_REF:0000002InterProGO_REF:0000002
AcadlRatoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
AcadlRatoxidoreductase activity, acting on the CH-CH group of donors enablesIEAInterPro:IPR006091 more ...1600115GO_REF:0000002InterProGO_REF:0000002
AcadlRatprotein binding enablesISOACADL (Homo sapiens)1624291UniProtKB:P22735 more ...RGDPMID:28514442 more ...
AcadlRatprotein homodimerization activity  IDAAcadl (Rattus norvegicus)2317678tetramerizationRGD 
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RGD Manual Annotations


  
Object Symbol
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Reference
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Original Reference(s)
AcadlRatfatty acid beta degradation pathway   ISOACADL (Homo sapiens)2317589 RGD 
AcadlRatfatty acid beta degradation pathway   IDA 2317678 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
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Term
Qualifier
Evidence
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Reference
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Original Reference(s)
AcadlRateicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma  IEA 6907045 KEGGrno:03320
AcadlRatfatty acid metabolic pathway  IEA 6907045 KEGGrno:00071

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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Acyl-CoA dehydrogenases. A mechanistic overview. Ghisla S and Thorpe C, Eur J Biochem. 2004 Feb;271(3):494-508.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Abnormal nonshivering thermogenesis in mice with inherited defects of fatty acid oxidation. Guerra C, etal., J Clin Invest. 1998 Nov 1;102(9):1724-31. doi: 10.1172/JCI4532.
5. Biosynthesis of four rat liver mitochondrial acyl-CoA dehydrogenases: in vitro synthesis, import into mitochondria, and processing of their precursors in a cell-free system and in cultured cells. Ikeda Y, etal., Arch Biochem Biophys. 1987 Feb 1;252(2):662-74.
6. Purification and characterization of short-chain, medium-chain, and long-chain acyl-CoA dehydrogenases from rat liver mitochondria. Isolation of the holo- and apoenzymes and conversion of the apoenzyme to the holoenzyme. Ikeda Y, etal., J Biol Chem. 1985 Jan 25;260(2):1311-25.
7. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
8. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
9. Molecular cloning and nucleotide sequence of cDNAs encoding the precursors of rat long chain acyl-coenzyme A, short chain acyl-coenzyme A, and isovaleryl-coenzyme A dehydrogenases. Sequence homology of four enzymes of the acyl-CoA dehydrogenase family. Matsubara Y, etal., J Biol Chem 1989 Sep 25;264(27):16321-31.
10. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
11. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
12. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
13. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
14. RefSeq and LocusLink: NCBI gene-centered resources Pruitt KD and Maglott DR, Nucleic Acids Res. 2001 Jan 1;29(1):137-40.
15. GOA pipeline RGD automated data pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
19. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
20. Cloning of a cDNA for short/branched chain acyl-Coenzyme A dehydrogenase from rat and characterization of its tissue expression and substrate specificity. Willard J, etal., Arch Biochem Biophys 1996 Jul 1;331(1):127-33.
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PMID:8268228   PMID:9861014   PMID:14651853   PMID:15489334   PMID:15639194   PMID:18614015   PMID:21151927   PMID:23106098   PMID:26316108   PMID:26767982  



Acadl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8975,783,689 - 75,822,077 (-)NCBIGRCr8
mRatBN7.2968,333,981 - 68,372,149 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl968,333,980 - 68,372,220 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx976,823,956 - 76,861,404 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0981,952,887 - 81,990,335 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0980,351,815 - 80,389,588 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0973,833,368 - 73,871,857 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,833,388 - 73,871,888 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0973,434,371 - 73,472,895 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4965,613,130 - 65,651,775 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1965,760,111 - 65,798,754 (-)NCBI
Celera965,813,263 - 65,851,320 (-)NCBICelera
RH 3.4 Map9612.99RGD
Cytogenetic Map9q32NCBI
ACADL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382210,187,923 - 210,225,447 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2210,187,126 - 210,225,447 (-)EnsemblGRCh38hg38GRCh38
GRCh372211,052,647 - 211,090,171 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362210,760,959 - 210,798,392 (-)NCBINCBI36Build 36hg18NCBI36
Build 342210,878,223 - 210,915,653NCBI
Celera2204,820,713 - 204,858,229 (-)NCBICelera
Cytogenetic Map2q34ENTREZGENE
HuRef2202,897,948 - 202,935,464 (-)NCBIHuRef
CHM1_12211,058,802 - 211,096,307 (-)NCBICHM1_1
T2T-CHM13v2.02210,668,601 - 210,706,298 (-)NCBIT2T-CHM13v2.0
Acadl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39166,869,998 - 66,902,468 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl166,869,998 - 66,902,436 (-)EnsemblGRCm39 Ensembl
GRCm38166,830,839 - 66,863,309 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl166,830,839 - 66,863,277 (-)EnsemblGRCm38mm10GRCm38
MGSCv37166,877,427 - 66,909,841 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36166,764,061 - 66,796,475 (-)NCBIMGSCv36mm8
Celera167,346,353 - 67,377,247 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map133.64NCBI
Acadl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554575,266,033 - 5,300,056 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554575,266,032 - 5,300,632 (+)NCBIChiLan1.0ChiLan1.0
ACADL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213112,810,225 - 112,849,103 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B112,824,820 - 112,864,084 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B97,445,421 - 97,483,514 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B215,847,775 - 215,885,524 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B215,847,775 - 215,885,524 (-)Ensemblpanpan1.1panPan2
ACADL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13718,028,244 - 18,073,975 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3718,017,087 - 18,073,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3718,906,886 - 18,954,457 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03717,964,225 - 18,011,748 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3717,968,220 - 18,011,731 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13717,917,084 - 17,964,271 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03717,879,408 - 17,926,609 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03717,894,240 - 17,941,487 (-)NCBIUU_Cfam_GSD_1.0
Acadl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303166,499,563 - 166,529,186 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493684566,241 - 96,249 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493684566,674 - 96,248 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACADL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15112,933,506 - 112,969,577 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115112,935,631 - 112,969,381 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215124,759,345 - 124,793,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACADL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11095,886,502 - 95,925,928 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1095,887,465 - 95,925,578 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040103,432,787 - 103,482,132 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acadl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247656,018,534 - 6,050,736 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Acadl
294 total Variants

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:24
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000017686
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat

1 to 10 of 30 rows
AW530440  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,371,430 - 68,371,643 (+)MAPPERmRatBN7.2
Rnor_6.0973,871,139 - 73,871,351NCBIRnor6.0
Rnor_5.0973,434,877 - 73,435,089UniSTSRnor5.0
RGSC_v3.4965,651,057 - 65,651,269UniSTSRGSC3.4
Celera965,850,602 - 65,850,814UniSTS
RH 3.4 Map9597.4UniSTS
Cytogenetic Map9q32UniSTS
RH142293  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0973,465,420 - 73,467,333NCBIRnor5.0
RGSC_v3.4965,618,692 - 65,620,274UniSTSRGSC3.4
Celera965,818,825 - 65,820,407UniSTS
RH 3.4 Map9612.99UniSTS
Cytogenetic Map9q32UniSTS
ACADL  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,362,611 - 68,362,737 (+)MAPPERmRatBN7.2
Rnor_6.0973,862,321 - 73,862,446NCBIRnor6.0
Rnor_5.0973,443,782 - 73,443,907UniSTSRnor5.0
RGSC_v3.4965,642,239 - 65,642,364UniSTSRGSC3.4
Celera965,841,784 - 65,841,909UniSTS
Cytogenetic Map9q32UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000017686   ⟹   ENSRNOP00000017686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl968,333,983 - 68,372,220 (-)Ensembl
Rnor_6.0 Ensembl973,833,388 - 73,871,888 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118459   ⟹   ENSRNOP00000097339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl968,333,980 - 68,367,608 (-)Ensembl
RefSeq Acc Id: NM_012819   ⟹   NP_036951
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,783,689 - 75,821,854 (-)NCBI
mRatBN7.2968,333,981 - 68,372,149 (-)NCBI
Rnor_6.0973,833,368 - 73,871,857 (-)NCBI
Rnor_5.0973,434,371 - 73,472,895 (+)NCBI
RGSC_v3.4965,613,130 - 65,651,775 (-)RGD
Celera965,813,263 - 65,851,320 (-)RGD
Sequence:
RefSeq Acc Id: XM_063266668   ⟹   XP_063122738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,790,793 - 75,822,077 (-)NCBI
1 to 10 of 10 rows
Protein RefSeqs NP_036951 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122738 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40668 (Get FASTA)   NCBI Sequence Viewer  
  AAA41514 (Get FASTA)   NCBI Sequence Viewer  
  AAH62006 (Get FASTA)   NCBI Sequence Viewer  
  EDL75290 (Get FASTA)   NCBI Sequence Viewer  
  EDL75291 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017686
  ENSRNOP00000017686.4
GenBank Protein P15650 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_036951   ⟸   NM_012819
- Peptide Label: precursor
- UniProtKB: P15650 (UniProtKB/Swiss-Prot),   A6KFD6 (UniProtKB/TrEMBL),   A0A8I6GMH0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017686   ⟸   ENSRNOT00000017686
Ensembl Acc Id: ENSRNOP00000097339   ⟸   ENSRNOT00000118459
RefSeq Acc Id: XP_063122738   ⟸   XM_063266668
- Peptide Label: isoform X1
Name Modeler Protein Id AA Range Protein Structure
AF-P15650-F1-model_v2 AlphaFold P15650 1-430 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696724
Promoter ID:EPDNEW_R7249
Type:initiation region
Name:Acadl_1
Description:acyl-CoA dehydrogenase, long chain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0973,871,908 - 73,871,968EPDNEW


1 to 37 of 37 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-27289 BioCyc
Ensembl Genes ENSRNOG00000012966 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000017686 ENTREZGENE
  ENSRNOT00000017686.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.540.10 UniProtKB/Swiss-Prot
  2.40.110.10 UniProtKB/Swiss-Prot
  Butyryl-CoA Dehydrogenase, subunit A, domain 3 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5599828 IMAGE-MGC_LOAD
InterPro Acyl-CoA_dehydrogenase UniProtKB/Swiss-Prot
  Acyl-CoA_DH_CS UniProtKB/Swiss-Prot
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/Swiss-Prot
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/Swiss-Prot
  AcylCo_DH-like_C UniProtKB/Swiss-Prot
  AcylCo_DH/oxidase_C UniProtKB/Swiss-Prot
  AcylCoA_DH/ox_N UniProtKB/Swiss-Prot
  AcylCoA_DH/ox_N_sf UniProtKB/Swiss-Prot
  AcylCoA_DH/oxidase_NM_dom UniProtKB/Swiss-Prot
  LCAD UniProtKB/Swiss-Prot
KEGG Report rno:25287 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72554 IMAGE-MGC_LOAD
NCBI Gene 25287 ENTREZGENE
PANTHER LONG-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL UniProtKB/Swiss-Prot
  MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED UniProtKB/Swiss-Prot
Pfam Acyl-CoA_dh_1 UniProtKB/Swiss-Prot
  Acyl-CoA_dh_M UniProtKB/Swiss-Prot
  Acyl-CoA_dh_N UniProtKB/Swiss-Prot
PhenoGen Acadl PhenoGen
PROSITE ACYL_COA_DH_1 UniProtKB/Swiss-Prot
  ACYL_COA_DH_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012966 RatGTEx
Superfamily-SCOP SSF47203 UniProtKB/Swiss-Prot
  SSF56645 UniProtKB/Swiss-Prot
TIGR TC203790
UniProt A0A8I6GMH0 ENTREZGENE, UniProtKB/TrEMBL
  A6KFD6 ENTREZGENE, UniProtKB/TrEMBL
  A6KFD7_RAT UniProtKB/TrEMBL
  ACADL_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 37 of 37 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-28 Acadl  acyl-CoA dehydrogenase, long chain  Acadl  acyl-Coenzyme A dehydrogenase, long-chain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-18 Acadl  acyl-Coenzyme A dehydrogenase, long-chain  Acadl  acetyl-Coenzyme A dehydrogenase, long-chain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2003-04-09 Acadl  acetyl-Coenzyme A dehydrogenase, long-chain    Acyl Coenzyme A dehydrogenase, long chain  Name updated 629478 APPROVED
2002-06-10 Acadl  Acyl Coenzyme A dehydrogenase, long chain      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_expression expressed in liver 631718
gene_function catalyzes the alpha,beta-dehydrogenation of acyl-CoA esters 631739
gene_homology has high similarity to acyl-CoA dehydrogenase family members short chain acyl-CoA (SCAD), medium chain acyl-CoA dehydrogenase (MCAD), and isovaleryl-CoA dehydrogenase (IVD) 631718
gene_process plays a role in fatty acid metabolism 631739
gene_product member of the acyl-CoA dehydrogenase family 631718
gene_protein 430 amino acid sequence with 30 amino acid leader sequence and 400 amino acid residues in the mature protein 631718