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Gene: Mgat4c (MGAT4 family, member C) Rattus norvegicus

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Symbol:

Mgat4c

Name:

MGAT4 family, member C

RGD ID:

1307871

Description:

Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Orthologous to human MGAT4C (MGAT4 family member C); PARTICIPATES IN N-linked glycan biosynthetic pathway; INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; copper atom.

Type:

protein-coding

RefSeq Status:

INFERRED

Previously known as:

alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C; LOC299756; mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative); RGD1307871; similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylgluco

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MGAT4C (MGAT4 family member C)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Mgat4c (MGAT4 family, member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mgat4c (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MGAT4C (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MGAT4C (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mgat4c (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MGAT4C (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MGAT4C (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mgat4c (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LGALS12 (galectin 12)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Mgat4c (MGAT4 family, member C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MGAT4C (MGAT4 family member C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mgat4c (mgat4 family member C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17173	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	mgat4c	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Allele / Splice:

Mgat4c^{Tn(sb-T2/Bart3)2.244Mcwi}

Genetic Models:

F344-Mgat4c^{Tn(sb-T2/Bart3)2.244Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	38,596,117 - 39,361,103 (+)	NCBI		GRCr8
mRatBN7.2	7	36,709,564 - 37,485,810 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	37,260,321 - 37,474,571 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	39,180,021 - 39,401,146 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	41,383,112 - 41,604,239 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	41,158,061 - 41,379,194 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	43,249,369 - 44,024,278 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	44,009,069 - 44,024,456 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	43,829,446 - 44,052,611 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	40,171,454 - 40,383,441 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	40,364,873 - 40,402,911 (+)	NCBI
Celera	7	34,230,724 - 34,444,124 (+)	NCBI		Celera
Cytogenetic Map	7	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mgat4c	Rat	1,2-dichloroethane	increases expression	ISO	Mgat4c (Mus musculus)	6480464	ethylene dichloride results in increased expression of MGAT4C mRNA	CTD	PMID:28960355
Mgat4c	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Mgat4c (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of MGAT4C mRNA	CTD	PMID:22206623
Mgat4c	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Mgat4c (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of MGAT4C mRNA	CTD	PMID:21570461
Mgat4c	Rat	2-palmitoylglycerol	increases expression	ISO	MGAT4C (Homo sapiens)	6480464	2-palmitoylglycerol results in increased expression of MGAT4C mRNA	CTD	PMID:37199045
Mgat4c	Rat	4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid	decreases expression	ISO	MGAT4C (Homo sapiens)	6480464	Am 580 results in decreased expression of MGAT4C mRNA	CTD	PMID:16982809
Mgat4c	Rat	5-aza-2'-deoxycytidine	affects expression	ISO	MGAT4C (Homo sapiens)	6480464	Decitabine affects the expression of MGAT4C mRNA	CTD	PMID:23300844
Mgat4c	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of MGAT4C mRNA	CTD	PMID:24780913
Mgat4c	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of MGAT4C mRNA	CTD	PMID:25825206
Mgat4c	Rat	aflatoxin B1	increases methylation	ISO	MGAT4C (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of MGAT4C intron	CTD	PMID:30157460
Mgat4c	Rat	all-trans-retinoic acid	increases expression	ISO	MGAT4C (Homo sapiens)	6480464	Tretinoin results in increased expression of MGAT4C mRNA	CTD	PMID:21934132
Mgat4c	Rat	all-trans-retinoic acid	decreases expression	ISO	Mgat4c (Mus musculus)	6480464	Tretinoin results in decreased expression of MGAT4C mRNA	CTD	PMID:36189433
Mgat4c	Rat	all-trans-retinoic acid	multiple interactions	ISO	Mgat4c (Mus musculus)	6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of MGAT4C mRNA	CTD	PMID:36189433
Mgat4c	Rat	aristolochic acid A	decreases expression	ISO	MGAT4C (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of MGAT4C mRNA	CTD	PMID:33212167
Mgat4c	Rat	benzo[a]pyrene	increases expression	ISO	MGAT4C (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of MGAT4C mRNA	CTD	PMID:17879257
Mgat4c	Rat	benzo[a]pyrene	affects methylation	ISO	MGAT4C (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of MGAT4C promoter	CTD	PMID:27901495
Mgat4c	Rat	benzo[a]pyrene	decreases methylation	ISO	MGAT4C (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of MGAT4C 5' UTR	CTD	PMID:27901495
Mgat4c	Rat	benzo[a]pyrene	decreases expression	ISO	MGAT4C (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of MGAT4C mRNA	CTD	PMID:22316170
Mgat4c	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of MGAT4C mRNA	CTD	PMID:25181051
Mgat4c	Rat	bisphenol A	multiple interactions	ISO	MGAT4C (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of MGAT4C gene	CTD	PMID:31601247
Mgat4c	Rat	bisphenol A	increases methylation	ISO	MGAT4C (Homo sapiens)	6480464	bisphenol A results in increased methylation of MGAT4C gene	CTD	PMID:31601247
Mgat4c	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of MGAT4C gene	CTD	PMID:28505145
Mgat4c	Rat	bisphenol A	increases methylation	ISO	Mgat4c (Mus musculus)	6480464	bisphenol A results in increased methylation of MGAT4C promoter	CTD	PMID:27312807
Mgat4c	Rat	cadmium atom	multiple interactions	ISO	MGAT4C (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of MGAT4C mRNA	CTD	PMID:35301059
Mgat4c	Rat	cadmium dichloride	multiple interactions	ISO	MGAT4C (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of MGAT4C mRNA	CTD	PMID:35301059
Mgat4c	Rat	chromium(6+)	affects expression	ISO	Mgat4c (Mus musculus)	6480464	chromium hexavalent ion affects the expression of MGAT4C mRNA	CTD	PMID:28472532
Mgat4c	Rat	cisplatin	affects expression	ISO	MGAT4C (Homo sapiens)	6480464	Cisplatin affects the expression of MGAT4C mRNA	CTD	PMID:23300844
Mgat4c	Rat	copper atom	increases expression	EXP		6480464	Copper deficiency results in increased expression of MGAT4C mRNA	CTD	PMID:26033743
Mgat4c	Rat	copper(0)	increases expression	EXP		6480464	Copper deficiency results in increased expression of MGAT4C mRNA	CTD	PMID:26033743
Mgat4c	Rat	dextran sulfate	multiple interactions	ISO	Mgat4c (Mus musculus)	6480464	evodiamine inhibits the reaction [Dextran Sulfate results in decreased expression of MGAT4C protein]	CTD	PMID:35362542
Mgat4c	Rat	dextran sulfate	decreases expression	ISO	Mgat4c (Mus musculus)	6480464	Dextran Sulfate results in decreased expression of MGAT4C protein	CTD	PMID:35362542
Mgat4c	Rat	Evodiamine	multiple interactions	ISO	Mgat4c (Mus musculus)	6480464	evodiamine inhibits the reaction [Dextran Sulfate results in decreased expression of MGAT4C protein]	CTD	PMID:35362542
Mgat4c	Rat	folic acid	decreases expression	ISO	Mgat4c (Mus musculus)	6480464	Folic Acid results in decreased expression of MGAT4C mRNA	CTD	PMID:25629700
Mgat4c	Rat	fulvestrant	multiple interactions	ISO	MGAT4C (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of MGAT4C gene	CTD	PMID:31601247
Mgat4c	Rat	genistein	decreases expression	ISO	Mgat4c (Mus musculus)	6480464	Genistein results in decreased expression of MGAT4C mRNA	CTD	PMID:32186404
Mgat4c	Rat	indinavir	multiple interactions	ISO	Mgat4c (Mus musculus)	6480464	[Zidovudine co-treated with Lamivudine co-treated with Indinavir] results in increased expression of MGAT4C mRNA	CTD	PMID:16931933
Mgat4c	Rat	lamivudine	multiple interactions	ISO	Mgat4c (Mus musculus)	6480464	[Zidovudine co-treated with Lamivudine co-treated with Indinavir] results in increased expression of MGAT4C mRNA more ...	CTD	PMID:16931933
Mgat4c	Rat	lipopolysaccharide	multiple interactions	ISO	MGAT4C (Homo sapiens)	6480464	[S-(1 more ...	CTD	PMID:35811015
Mgat4c	Rat	lipopolysaccharide	increases expression	ISO	MGAT4C (Homo sapiens)	6480464	Lipopolysaccharides results in increased expression of MGAT4C mRNA	CTD	PMID:35811015
Mgat4c	Rat	maneb	multiple interactions	ISO	Mgat4c (Mus musculus)	6480464	[Maneb co-treated with Paraquat] results in decreased expression of MGAT4C mRNA	CTD	PMID:36117858
Mgat4c	Rat	mono(2-ethylhexyl) phthalate	multiple interactions	ISO	Mgat4c (Mus musculus)	6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of MGAT4C mRNA	CTD	PMID:36189433
Mgat4c	Rat	N-methyl-4-phenylpyridinium	decreases expression	ISO	MGAT4C (Homo sapiens)	6480464	1-Methyl-4-phenylpyridinium results in decreased expression of MGAT4C mRNA	CTD	PMID:24810058
Mgat4c	Rat	paraquat	multiple interactions	ISO	Mgat4c (Mus musculus)	6480464	[Maneb co-treated with Paraquat] results in decreased expression of MGAT4C mRNA	CTD	PMID:36117858
Mgat4c	Rat	pirinixic acid	decreases expression	ISO	Mgat4c (Mus musculus)	6480464	pirinixic acid results in decreased expression of MGAT4C mRNA	CTD	PMID:17426115
Mgat4c	Rat	rotenone	decreases expression	ISO	MGAT4C (Homo sapiens)	6480464	Rotenone results in decreased expression of MGAT4C mRNA	CTD	PMID:29955902
Mgat4c	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	MGAT4C (Homo sapiens)	6480464	[S-(1 more ...	CTD	PMID:35811015
Mgat4c	Rat	saquinavir	multiple interactions	ISO	Mgat4c (Mus musculus)	6480464	[Zidovudine co-treated with Lamivudine co-treated with Saquinavir] results in increased expression of MGAT4C mRNA	CTD	PMID:16931933
Mgat4c	Rat	serpentine asbestos	increases methylation	ISO	MGAT4C (Homo sapiens)	6480464	Asbestos and Serpentine results in increased methylation of MGAT4C 5' UTR	CTD	PMID:29523930
Mgat4c	Rat	silicon dioxide	increases expression	ISO	MGAT4C (Homo sapiens)	6480464	Silicon Dioxide analog results in increased expression of MGAT4C mRNA	CTD	PMID:23806026
Mgat4c	Rat	triclosan	increases expression	ISO	MGAT4C (Homo sapiens)	6480464	Triclosan results in increased expression of MGAT4C mRNA	CTD	PMID:30510588
Mgat4c	Rat	zidovudine	multiple interactions	ISO	Mgat4c (Mus musculus)	6480464	[Zidovudine co-treated with Lamivudine co-treated with Indinavir] results in increased expression of MGAT4C mRNA more ...	CTD	PMID:16931933

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mgat4c	Rat	biological_process		ND		1598407	11/2009: no relevant rat data	RGD
Mgat4c	Rat	protein N-linked glycosylation	involved_in	IBA	MGI:2143974 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mgat4c	Rat	acetylglucosaminyltransferase activity	enables	IBA	MGI:2143974 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mgat4c	Rat	N-linked glycan biosynthetic pathway		IEA		6907045		KEGG	rno:00510

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation

Mgat4c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	38,596,117 - 39,361,103 (+)	NCBI		GRCr8
mRatBN7.2	7	36,709,564 - 37,485,810 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	37,260,321 - 37,474,571 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	39,180,021 - 39,401,146 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	41,383,112 - 41,604,239 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	41,158,061 - 41,379,194 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	43,249,369 - 44,024,278 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	44,009,069 - 44,024,456 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	43,829,446 - 44,052,611 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	40,171,454 - 40,383,441 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	40,364,873 - 40,402,911 (+)	NCBI
Celera	7	34,230,724 - 34,444,124 (+)	NCBI		Celera
Cytogenetic Map	7	q21	NCBI

MGAT4C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	85,955,667 - 86,839,000 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	85,955,666 - 86,838,904 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	86,349,446 - 87,232,777 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	84,896,655 - 85,756,776 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	86,035,834 - 86,903,303 (-)	NCBI		Celera
Cytogenetic Map	12	q21.31-q21.32	NCBI
HuRef	12	83,429,982 - 84,296,311 (-)	NCBI		HuRef
CHM1_1	12	86,338,018 - 87,197,963 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	85,936,518 - 86,820,003 (-)	NCBI		T2T-CHM13v2.0

Mgat4c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	101,517,348 - 102,227,712 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	101,517,348 - 102,227,330 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	101,681,487 - 102,391,851 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	101,681,487 - 102,391,469 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	101,621,492 - 101,854,103 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	101,804,125 - 101,820,001 (+)	NCBI		MGSCv36	mm8
Celera	10	104,090,759 - 104,325,697 (+)	NCBI		Celera
Cytogenetic Map	10	D1	NCBI
cM Map	10	52.92	NCBI

Mgat4c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	23,836,790 - 23,863,533 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	23,839,724 - 23,912,418 (-)	NCBI	ChiLan1.0	ChiLan1.0

MGAT4C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	94,018,154 - 94,878,810 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	94,014,552 - 94,875,224 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	83,506,921 - 84,380,683 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	86,739,352 - 87,211,044 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	86,745,263 - 86,793,902 (-)	Ensembl	panpan1.1		panPan2

MGAT4C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	27,461,658 - 28,007,636 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	27,462,533 - 27,490,566 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	27,905,808 - 28,452,779 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	28,076,141 - 28,621,239 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	28,078,827 - 28,106,862 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	27,428,452 - 27,975,732 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	27,469,066 - 28,016,877 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	27,758,519 - 28,306,843 (-)	NCBI		UU_Cfam_GSD_1.0

Mgat4c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	32,395,087 - 32,829,837 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936507	3,410,481 - 3,420,442 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936507	3,410,481 - 3,476,061 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MGAT4C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	96,180,960 - 96,191,375 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	95,463,779 - 96,194,023 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	100,997,528 - 101,009,732 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MGAT4C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	81,372,233 - 82,235,001 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	81,373,536 - 81,383,704 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	163,053,830 - 163,950,828 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mgat4c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624837	5,141,369 - 5,153,627 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624837	5,142,314 - 5,930,816 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Mgat4c
5965 total Variants

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
7	40382053	40382054	G	T	snv	FHL/EurMcwi (MCW)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	125
Count of miRNA genes:	88
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000005523
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	19654317	49753746	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	21921195	66921195	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	9866467	60460686	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	24099606	69099606	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	24751841	69751841	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	29409683	84928080	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	9462246	58265113	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	19654317	49753746	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	31112832	76112832	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	19654317	52888450	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	17944357	62944357	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	17004598	62004598	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	34293282	79293282	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	34293282	79293282	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	26737401	63902784	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	29409683	53612950	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	29409683	74409683	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	15573889	60573889	Rat

D7Rat84

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	7	39,336,492 - 39,336,725 (+)	Marker Load Pipeline
Rnor_6.0	7	43,998,792 - 43,999,020	NCBI	Rnor6.0
Celera	7	34,419,856 - 34,420,085	UniSTS
RH 3.4 Map	7	329.8	UniSTS
RH 3.4 Map	7	329.8	RGD
RH 2.0 Map	7	278.5	RGD
SHRSP x BN Map	7	23.15	RGD
FHH x ACI Map	7	19.09	RGD
Cytogenetic Map	7	q13	UniSTS

This gene Mgat4c is modified in the following models/strains:

F344-Mgat4c^{Tn(sb-T2/Bart3)2.244Mcwi}

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	4	16	108	37	22	14	13	14	5	98	45	89	28	54	8


RefSeq Transcripts	NM_001135814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005523 ⟹ ENSRNOP00000005523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	37,260,321 - 37,474,571 (+)	Ensembl
Rnor_6.0 Ensembl	7	44,009,069 - 44,024,456 (+)	Ensembl

RefSeq Acc Id:

NM_001135814 ⟹ NP_001129286

RefSeq Status:

INFERRED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,146,867 - 39,361,103 (+)	NCBI
mRatBN7.2	7	37,260,321 - 37,474,571 (+)	NCBI
Rnor_6.0	7	43,800,452 - 44,024,152 (+)	NCBI
Rnor_5.0	7	43,829,446 - 44,052,611 (+)	NCBI
RGSC_v3.4	7	40,171,454 - 40,383,441 (+)	RGD
Celera	7	34,230,724 - 34,444,124 (+)	RGD

Sequence:

show sequence

GTGACATCATCTTCCAGTCGGAGTACACAGAACAGCTGAGGCAGCGTTCAGTTTCAGCCCGAGTGCTATTATGATGGATGTTTACATGTCTTCATTGAGAGCCAATTATCTTGCTTTTGTGTGAGGCC
CAAGGATCACTCATGCTGCCAGGCTGCACAGAGCACTGTTGGATCTAGCTGAACGAATTGTTTTTCTCTGTCTCCGGGTGACAATAGCTTTTATACAGGACAGATTATGTCAGCTTCTTTCTTAAGGA
GAGGATGTTTAAATTTTATCAAATGAAATATATTTTTCAAATATTGGATAAAATGAGATGCTTGCGAAAACGTTCTACAGTGTCATTCTTGGGAGTCCTTGTTGTTTTTCTTCTATTCATGAATGTGT
TCATTGAAGATAGCTATGTTCTGGAAGGCGACAAGCAACTTATAAGGGAAACATCAACACATCAACTTAATTCTGAACGCTATGTTCATACCTTCAAGGATTTATCAAACTTCTCAGGAACTATAAAT
GTCACCTATCGCTACCTGGCTGCCACACCTTTACAGAGAAAGCGATATCTCACAATTGGACTTTCATCAGTAAAACGGAAAAAAGGAAATTATTTACTTGAGACAATCAAGTCAATTTTTGAACAGTC
CAGCTATGAAGAACTAAAAGAAATTTCAGTTGTAGTGCATCTAGCAGACTTTAATTCATCATGGCGTGATGCCATGGTCCAAGATATTACACAGAAATTTGCCCATCATATTATTGCAGGAAGATTAA
TGGTTATACATGCTCCTGAAGAATATTATCCAGTTCTGGATGGTCTTAAAAGAAATTACAATGACCCAGAAGATAGAGTCAGATTTCGCTCCAAGCAAAATGTAGATTATGCTTTTCTGCTAAATTTC
TGTGCCAATACTTCTGACTATTATGTAATGCTTGAAGATGATGTCCGGTGTTCCAGAAATTTCTTAACTGCCATCAAGAAAGTTATCGCATCCTTAGAAGGAACATACTGGGTAACTCTTGAGTTCTC
TAAACTTGGCTACATTGGAAAACTCTATCATTCTCATGATCTCCCACGTCTGGCCCATTTCTTATTAATGTTTTATCAAGAAATGCCTTGTGACTGGCTATTGACTCATTTCCGAGGGCTGCTGGCTC
AGAAAAATGTGATTCGATTTAAACCTTCTCTCTTTCAGCACATGGGGTATTATTCATCCTATAAAGGAACGGAGAATAAACTGAAGGATGATGACTTTGAAGAGGAGTCATTTGACATCCCTGATAAC
CCACCAGCAAGTCTCTACACCAACATGAATGTCTTTGAAAATTACGAAGCAAGCAAGGCTTACAGTAGTGTTGATGAGTACTTTTGGGGAAAGCCACCTTCAACGGGGGATACGTTTGTTATTGTATT
TGAGAATCCTATTAAAATTAAAAAAATTAAGGTGAATACTGGAACAGAAGACCGGCAGAATGACATTTTGCATCACGGAGCCCTAGATGTTGGGGAAAAACTCATTTTTAGCAAACAAATAAGACAAT
GTGAAACTTACTTAAGACTAGGGGAATTCAAAAATGGAAACTTTGAAATGTCAGATGTGAATCAAAAAATTCCCTTTGACATACATTGCATGAGGATATGTGTCACCAAAACTCAGAAAGAATGGTTG
ATAATTAGGAGCATCAGCATTTGGACTTCCTAGCCAAGTAAATCAGTAGATTGAGTTTCTGAAACAGGTCTTCCTGTTTCAATTTTTGCTATTCCCTCTTTTGCTACTTTTGTCTTTTGGAGGGTAAC
TAATTGGTGTGCTGTGGCACAAGAACGTTGAGTCATCTCAGCAGTTTTGATTGTAGTTTTACTAAGCACATCTTTGTAATTAATTTCACGTTTCAGGCTGAATATCATTCTGTAGTTAAAACTGATTT
CACTCATTCATTTAAATGTTCATAGTTCCAAATTTCAACTCATTGTGCAAAGAGTTGATAATTTATTTTATGTTTAGAAAGATTCTTAGTAAGAATATATGAGAATATGCAGATTGGTTGCCATCATA
AAATGGGATACTTTTTCTTATAAATTTAGGCTTTCACTGACTGATGTATTTCTACAATTAATACCTCCTCATGGAAGTGGTGTCTTTACAACAGATTAGTTGTGTAAGTAGAGCTTTGAAAAAACAGA
CTTAAAAGTCATCATTCCTTTGGTTATTTCTATGAAAAGGAACATTGCTCATTGTTTTAAAACATTTAATTGAGCACATGTTAATACAATTCCCATGAGAATAAGTCTATTTCTAATTTCCCTTTTGA
AAATATATAGTTAAGCTCAATATTTTAAGGTTATATTGGATATCTGTAATTAATAGAGGAAGAGAGATGGCTTACCGTTAGTTCATTCATACATTTTCAGTATATGTAGAAAAAACTGAAATTGATGT
TTTTACTTTTTGTATTAAAACTCATGTGATTAAAATTGTTGTAATTTATCATATTTGGGGAAGATTAAATGGCTGTCTTATGTGGGAGAAAAGTAAAATTTAAAGTAACTAAGTTTAGGTTTTT

hide sequence

RefSeq Acc Id:

XM_017594737 ⟹ XP_017450226

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,117 - 39,361,088 (+)	NCBI
mRatBN7.2	7	36,709,566 - 37,485,810 (+)	NCBI
Rnor_6.0	7	43,249,369 - 44,024,278 (+)	NCBI

Sequence:

show sequence

TGCAGACTGCAGATGAGAGAGTCTGGAGCAGAGACAGTTTTAACTTAGCCATTCCTAATTTATCTCAAGCGTTTTCAATTCATCTTCACTGCTCTGTGCACACAGGAACAGCAGATTGCCATCCCTGG
GGAACAAAACGCAACCGGGGATCTAGAGAGCTGTCACATTCCAAGAAATATTTAAATTGTGCTGGTTTTCTTCTGGAGAGCTGAGCCCAGGGAATGAAAACTCTCCATCCAGTCGTAGCTTTGCGGGC
AATAGATCAGAGGATATTGCCAGGCTCCTAATGGATTATTGTTATCGGGCAGGTTTTCTCTGAAGAGTCCTGATGTCTCCCAGATCCTAGGCTAATATCCAAAGGGATTGGAGGTCAGATCAGTTGTA
CGCACAAAGCCACTTTGGATCTGTCTCCAAAACGGGAACTCCCTTCACAGAATGCCACAACAAGGTTGAAGCAACAGTCCGTCTGGGTGACAATAGCTTTTATACAGGACAGATTATGTCAGCTTCTT
TCTTAAGGAGAGGATGTTTAAATTTTATCAAATGAAATATATTTTTCAAATATTGGATAAAATGAGATGCTTGCGAAAACGTTCTACAGTGTCATTCTTGGGAGTCCTTGTTGTTTTTCTTCTATTCA
TGAATGTGTTCATTGAAGATAGCTATGTTCTGGAAGGCGACAAGCAACTTATAAGGGAAACATCAACACATCAACTTAATTCTGAACGCTATGTTCATACCTTCAAGGATTTATCAAGNNACTTCTCA
GGAACTATAAATGTCACCTATCGCTACCTGGCTGCCACACCTTTACAGAGAAAGCGATATCTCACAATTGGACTTTCATCAGTAAAACGGAAAAAAGGAAATTATTTACTTGAGACAATCAAGTCAAT
TTTTGAACAGTCCAGCTATGAAGAACTAAAAGAAATTTCAGTTGTAGTGCATCTAGCAGACTTTAATTCATCATGGCGTGATGCCATGGTCCAAGATATTACACAGAAATTTGCCCATCATATTATTG
CAGGAAGATTAATGGTTATACATGCTCCTGAAGAATATTATCCAGTTCTGGATGGTCTTAAAAGAAATTACAATGACCCAGAAGATAGAGTCAGATTTCGCTCCAAGCAAAATGTAGATTATGCTTTT
CTGCTAAATTTCTGTGCCAATACTTCTGACTATTATGTAATGCTTGAAGATGATGTCCGGTGTTCCAGAAATTTCTTAACTGCCATCAAGAAAGTTATCGCATCCTTAGAAGGAACATACTGGGTAAC
TCTTGAGTTCTCTAAACTTGGCTACATTGGAAAACTCTATCATTCTCATGATCTCCCACGTCTGGCCCATTTCTTATTAATGTTTTATCAAGAAATGCCTTGTGACTGGCTATTGACTCATTTCCGAG
GGCTGCTGGCTCAGAAAAATGTGATTCGATTTAAACCTTCTCTCTTTCAGCACATGGGGTATTATTCATCCTATAAAGGAACGGAGAATAAACTGAAGGATGATGACTTTGAAGAGGAGTCATTTGAC
ATCCCTGATAACCCACCAGCAAGTCTCTACACCAACATGAATGTCTTTGAAAATTACGAAGCAAGCAAGGCTTACAGTAGTGTTGATGAGTACTTTTGGGGAAAGCCACCTTCAACGGGGGATACGTT
TGTTATTGTATTTGAGAATCCTATTAAAATTAAAAAAATTAAGGTGAATACTGGAACAGAAGACCGGCAGAATGACATTTTGCATCACGGAGCCCTAGATGTTGGGGAAAAACTCATTTTTAGCAAAC
AAATAAGACAATGTGAAACTTACTTAAGACTAGGGGAATTCAAAAATGGAAACTTTGAAATGTCAGATGTGAATCAAAAAATTCCCTTTGACATACATTGCATGAGGATATGTGTCACCAAAACTCAG
AAAGAATGGTTGATAATTAGGAGCATCAGCATTTGGACTTCCTAGCCAAGTAAATCAGTAGATTGAGTTTCTGAAACAGGTCTTCCTGTTTCAATTTTTGCTATTCCCTCTTTTGCTACTTTTGTCTT
TTGGAGGGTAACTAATTGGTGTGCTGTGGCACAAGAACGTTGAGTCATCTCAGCAGTTTTGATTGTAGTTTTACTAAGCACATCTTTGTAATTAATTTCACGTTTCAGGCTGAATATCATTCTGTAGT
TAAAACTGATTTCACTCATTCATTTAAATGTTCATAGTTCCAAATTTCAACTCATTGTGCAAAGAGTTGATAATTTATTTTATGTTTAGAAAGATTCTTAGTAAGAATATATGAGAATATGCAGATTG
GTTGCCATCATAAAATGGGATACTTTTTCTTATAAATTTAGGCTTTCACTGACTGATGTATTTCTACAATTAATACCTCCTCATGGAAGTGGTGTCTTTACAACAGATTAGTTGTGTAAGTAGAGCTT
TGAAAAAACAGACTTAAAAGTCATCATTCCTTTGGTTATTTCTATGAAAAGGAACATTGCTCATTGTTTTAAAACATTTAATTGAGCACATGTTAATACAATTCCCATGAGAATAAGTCTATTTCTAA
TTTCCCTTTTGAAAATATATAGTTAAGCTCAATATTTTAAGGTTATATTGGATATCTGTAATTAATAGAGGAAGAGAGATGGCTTACCGTTAGTTCATTCATACATTTTCAGTATATGTAGAAAAAAC
TGAAATTGATGTTTTTACTTTTTGTATTAAAACTCATGTGATTAAAATTGTTGTAATTTATCATATTTGGGGAAGATTAAATGGCTGTCTTATGTGGGAGAAAAGTAAAATTTAAAGTAACTAAGTTT
AGGTTTTTGTTGTTTTGTTTATTTTTTTGTCTATTGTTAATGAGTTATTTCGTAACAAATCCAAAATGAAGAATTTGTTTGGTGTTGTTGTTCCGATTACCAGATAACCCTCTTTACTCTTTATGAAA
AAATTC

hide sequence

RefSeq Acc Id:

XM_039078699 ⟹ XP_038934627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,117 - 39,361,088 (+)	NCBI
mRatBN7.2	7	36,709,566 - 37,485,810 (+)	NCBI

RefSeq Acc Id:

XM_039078700 ⟹ XP_038934628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,834,528 - 39,361,088 (+)	NCBI
mRatBN7.2	7	36,952,397 - 37,485,810 (+)	NCBI

RefSeq Acc Id:

XM_039078702 ⟹ XP_038934630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,117 - 39,361,088 (+)	NCBI
mRatBN7.2	7	36,709,564 - 37,485,810 (+)	NCBI

RefSeq Acc Id:

XM_063263206 ⟹ XP_063119276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,146,934 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263207 ⟹ XP_063119277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,921,793 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263208 ⟹ XP_063119278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,119 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263209 ⟹ XP_063119279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,119 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263210 ⟹ XP_063119280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,119 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263211 ⟹ XP_063119281

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,119 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263212 ⟹ XP_063119282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,119 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263214 ⟹ XP_063119284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,921,793 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263215 ⟹ XP_063119285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,834,528 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263216 ⟹ XP_063119286

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,117 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263217 ⟹ XP_063119287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,146,932 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263218 ⟹ XP_063119288

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,146,934 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263219 ⟹ XP_063119289

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,354,127 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263220 ⟹ XP_063119290

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,354,126 - 39,361,088 (+)	NCBI


Protein RefSeqs	NP_001129286	(Get FASTA)	NCBI Sequence Viewer
	XP_017450226	(Get FASTA)	NCBI Sequence Viewer
	XP_038934627	(Get FASTA)	NCBI Sequence Viewer
	XP_038934628	(Get FASTA)	NCBI Sequence Viewer
	XP_038934630	(Get FASTA)	NCBI Sequence Viewer
	XP_063119276	(Get FASTA)	NCBI Sequence Viewer
	XP_063119277	(Get FASTA)	NCBI Sequence Viewer
	XP_063119278	(Get FASTA)	NCBI Sequence Viewer
	XP_063119279	(Get FASTA)	NCBI Sequence Viewer
	XP_063119280	(Get FASTA)	NCBI Sequence Viewer
	XP_063119281	(Get FASTA)	NCBI Sequence Viewer
	XP_063119282	(Get FASTA)	NCBI Sequence Viewer
	XP_063119284	(Get FASTA)	NCBI Sequence Viewer
	XP_063119285	(Get FASTA)	NCBI Sequence Viewer
	XP_063119286	(Get FASTA)	NCBI Sequence Viewer
	XP_063119287	(Get FASTA)	NCBI Sequence Viewer
	XP_063119288	(Get FASTA)	NCBI Sequence Viewer
	XP_063119289	(Get FASTA)	NCBI Sequence Viewer
	XP_063119290	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16792	(Get FASTA)	NCBI Sequence Viewer
	EDM16793	(Get FASTA)	NCBI Sequence Viewer
	EDM16794	(Get FASTA)	NCBI Sequence Viewer
	EDM16795	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005523
	ENSRNOP00000005523.8
	ENSRNOP00000105158
	ENSRNOP00000110863

RefSeq Acc Id:

NP_001129286 ⟸ NM_001135814

- UniProtKB:

D3ZEV3 (UniProtKB/TrEMBL), A6IGA6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFKFYQMKYIFQILDKMRCLRKRSTVSFLGVLVVFLLFMNVFIEDSYVLEGDKQLIRETSTHQLNSERYVHTFKDLSNFSGTINVTYRYLAATPLQRKRYLTIGLSSVKRKKGNYLLETIKSIFEQSS
YEELKEISVVVHLADFNSSWRDAMVQDITQKFAHHIIAGRLMVIHAPEEYYPVLDGLKRNYNDPEDRVRFRSKQNVDYAFLLNFCANTSDYYVMLEDDVRCSRNFLTAIKKVIASLEGTYWVTLEFSK
LGYIGKLYHSHDLPRLAHFLLMFYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEESFDIPDNPPASLYTNMNVFENYEASKAYSSVDEYFWGKPPSTGDTFVIVFE
NPIKIKKIKVNTGTEDRQNDILHHGALDVGEKLIFSKQIRQCETYLRLGEFKNGNFEMSDVNQKIPFDIHCMRICVTKTQKEWLIIRSISIWTS

hide sequence

RefSeq Acc Id:	XP_017450226 ⟸ XM_017594737
- Peptide Label:	isoform X1
- UniProtKB:	D3ZEV3 (UniProtKB/TrEMBL), A6IGA6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFKFYQMKYIFQILDKMRCLRKRSTVSFLGVLVVFLLFMNVFIEDSYVLEGDKQLIRETSTHQLNSERYVHTFKDLSXXFSGTINVTYRYLAATPLQRKRYLTIGLSSVKRKKGNYLLETIKSIFEQS SYEELKEISVVVHLADFNSSWRDAMVQDITQKFAHHIIAGRLMVIHAPEEYYPVLDGLKRNYNDPEDRVRFRSKQNVDYAFLLNFCANTSDYYVMLEDDVRCSRNFLTAIKKVIASLEGTYWVTLEFS KLGYIGKLYHSHDLPRLAHFLLMFYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEESFDIPDNPPASLYTNMNVFENYEASKAYSSVDEYFWGKPPSTGDTFVIVF ENPIKIKKIKVNTGTEDRQNDILHHGALDVGEKLIFSKQIRQCETYLRLGEFKNGNFEMSDVNQKIPFDIHCMRICVTKTQKEWLIIRSISIWTS hide sequence

Ensembl Acc Id:

ENSRNOP00000005523 ⟸ ENSRNOT00000005523

RefSeq Acc Id:	XP_038934630 ⟸ XM_039078702
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038934627 ⟸ XM_039078699
- Peptide Label:	isoform X1
- UniProtKB:	D3ZEV3 (UniProtKB/TrEMBL), A6IGA6 (UniProtKB/TrEMBL)

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-34228	BioCyc
Ensembl Genes	ENSRNOG00000004149	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005523	ENTREZGENE
	ENSRNOT00000005523.8	UniProtKB/TrEMBL
	ENSRNOT00000144018	ENTREZGENE
	ENSRNOT00000146894	ENTREZGENE
InterPro	Glyco_transf_54	UniProtKB/TrEMBL
KEGG Report	rno:299756	UniProtKB/TrEMBL
NCBI Gene	299756	ENTREZGENE
PANTHER	ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 4-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE C	UniProtKB/TrEMBL
	Glyco_transf_54	UniProtKB/TrEMBL
Pfam	Glyco_transf_54	UniProtKB/TrEMBL
PhenoGen	Mgat4c	PhenoGen
RatGTEx	ENSRNOG00000004149	RatGTEx
UniProt	A6IGA6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZEV3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Mgat4c	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	Mgat4c_predicted	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Mgat4c_predicted	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (predicted)	RGD1307871_predicted	similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylgluco (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1307871_predicted	similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylgluco (predicted)	LOC299756_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC299756_predicted	similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylgluco (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Annotations - KEGG (archival)