Mad2l2 (mitotic arrest deficient 2 like 2) - Rat Genome Database

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Gene: Mad2l2 (mitotic arrest deficient 2 like 2) Rattus norvegicus
Analyze
Symbol: Mad2l2
Name: mitotic arrest deficient 2 like 2
RGD ID: 1307499
Description: Predicted to enable JUN kinase binding activity and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in positive regulation of epithelial to mesenchymal transition; positive regulation of extracellular matrix assembly; and positive regulation of gene expression. Predicted to be located in nucleoplasm and spindle. Predicted to be part of anaphase-promoting complex and zeta DNA polymerase complex. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group V. Orthologous to human MAD2L2 (mitotic arrest deficient 2 like 2); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC313702; MAD2 mitotic arrest deficient-like 2; MAD2 mitotic arrest deficient-like 2 (yeast); MAD2-like protein 2; mitotic arrest deficient 2-like protein 2; mitotic spindle assembly checkpoint protein MAD2B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85163,846,678 - 163,859,851 (+)NCBIGRCr8
mRatBN7.25158,563,545 - 158,576,698 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5158,563,567 - 158,576,693 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5161,288,790 - 161,293,471 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05163,110,607 - 163,115,262 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05163,066,954 - 163,071,609 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05164,943,183 - 164,956,255 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5164,950,917 - 164,956,255 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05168,601,233 - 168,614,293 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45165,218,362 - 165,222,828 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15165,228,549 - 165,233,014 (+)NCBI
Celera5156,851,516 - 156,855,981 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mad2l2RatAsthenozoospermia  ISOMAD2L2 (Homo sapiens)8554872ClinVar Annotator: match by term: asthenozoospermiaClinVarPMID:25741868
Mad2l2RatCharcot-Marie-Tooth disease type 2  ISOMAD2L2 (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 2ClinVarPMID:28492532
Mad2l2Ratchromosome 1p36 deletion syndrome  ISOMAD2L2 (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 1p36 deletion syndromeClinVar 
Mad2l2RatFamilial Atrial Fibrillation 6  ISOMAD2L2 (Homo sapiens)8554872ClinVar Annotator: match by term: Atrial fibrillation more ...ClinVarPMID:28492532
Mad2l2RatFanconi anemia complementation group V  ISOMAD2L2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
Mad2l2Ratoligospermia  ISOMAD2L2 (Homo sapiens)8554872ClinVar Annotator: match by term: OligospermiaClinVarPMID:25741868
Mad2l2RatTeratozoospermia  ISOMAD2L2 (Homo sapiens)8554872ClinVar Annotator: match by term: TeratozoospermiaClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mad2l2RatFanconi anemia complementation group V  ISOMAD2L2 (Homo sapiens)7240710 OMIM 

1 to 20 of 72 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mad2l2Rat17alpha-ethynylestradiol multiple interactionsISOMad2l2 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of MAD2L2 mRNACTDPMID:17942748
Mad2l2Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of MAD2L2 mRNACTDPMID:32145629
Mad2l2Rat17beta-estradiol increases expressionISOMad2l2 (Mus musculus)6480464Estradiol results in increased expression of MAD2L2 mRNACTDPMID:39298647
Mad2l2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOMAD2L2 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of MAD2L2 mRNACTDPMID:12377990
Mad2l2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of MAD2L2 mRNACTDPMID:33387578
Mad2l2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOMad2l2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of MAD2L2 mRNACTDPMID:28922406
Mad2l2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of MAD2L2 mRNACTDPMID:21215274
Mad2l2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464AHR protein alternative form affects the reaction [Tetrachlorodibenzodioxin results in decreased expression of MAD2L2 mRNA]CTDPMID:21215274
Mad2l2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOMad2l2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of MAD2L2 mRNACTDPMID:21570461
Mad2l2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOMad2l2 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of MAD2L2 mRNACTDPMID:17942748
Mad2l2Rat4,4'-sulfonyldiphenol increases expressionISOMad2l2 (Mus musculus)6480464bisphenol S results in increased expression of MAD2L2 mRNACTDPMID:39298647
Mad2l2Rat5-fluorouracil decreases expressionISOMAD2L2 (Homo sapiens)6480464Fluorouracil results in decreased expression of MAD2L2 proteinCTDPMID:16803524
Mad2l2Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of MAD2L2 mRNACTDPMID:24780913
Mad2l2Ratacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of MAD2L2 mRNACTDPMID:28959563
Mad2l2Rataflatoxin B1 increases expressionISOMAD2L2 (Homo sapiens)6480464Aflatoxin B1 results in increased expression of MAD2L2 mRNACTDPMID:27153756
Mad2l2Rataflatoxin B1 increases methylationISOMAD2L2 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of MAD2L2 intronCTDPMID:30157460
Mad2l2RatAflatoxin B2 alpha increases methylationISOMAD2L2 (Homo sapiens)6480464aflatoxin B2 results in increased methylation of MAD2L2 intronCTDPMID:30157460
Mad2l2Ratall-trans-retinoic acid decreases expressionISOMAD2L2 (Homo sapiens)6480464Tretinoin results in decreased expression of MAD2L2 mRNACTDPMID:33167477
Mad2l2Ratarsenite(3-) multiple interactionsISOMAD2L2 (Homo sapiens)6480464arsenite promotes the reaction [G3BP1 protein binds to MAD2L2 mRNA]CTDPMID:32406909
Mad2l2Ratbenzo[a]pyrene decreases expressionISOMad2l2 (Mus musculus)6480464Benzo(a)pyrene results in decreased expression of MAD2L2 mRNACTDPMID:21715664

1 to 20 of 72 rows

Biological Process
1 to 20 of 29 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mad2l2Ratactin filament organization involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:19443654RGDPMID:19443654
Mad2l2Ratcell division involved_inIEAUniProtKB-KW:KW-01321600115GO_REF:0000043UniProtGO_REF:0000043
Mad2l2RatDNA damage response involved_inIEAUniProtKB-KW:KW-02271600115GO_REF:0000043UniProtGO_REF:0000043
Mad2l2RatDNA damage response, signal transduction resulting in transcription involved_inISSUniProtKB:Q9UI951600115GO_REF:0000024UniProtGO_REF:0000024
Mad2l2RatDNA damage response, signal transduction resulting in transcription involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:17296730RGDPMID:17296730
Mad2l2Ratdouble-strand break repair involved_inISSUniProtKB:Q9UI951600115GO_REF:0000024UniProtGO_REF:0000024
Mad2l2Ratdouble-strand break repair involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:15988022RGDPMID:15988022
Mad2l2Raterror-prone translesion synthesis involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:24449906RGDPMID:24449906
Mad2l2Ratnegative regulation of canonical Wnt signaling pathway involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:19443654RGDPMID:19443654
Mad2l2Ratnegative regulation of cell-cell adhesion mediated by cadherin involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:19443654RGDPMID:19443654
Mad2l2Ratnegative regulation of double-strand break repair via homologous recombination involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:29656893RGDPMID:29656893
Mad2l2Ratnegative regulation of epithelial to mesenchymal transition involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:19443654RGDPMID:19443654
Mad2l2Ratnegative regulation of protein catabolic process involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:11459826RGDPMID:11459826
Mad2l2Ratnegative regulation of protein catabolic process involved_inISSUniProtKB:Q9UI951600115GO_REF:0000024UniProtGO_REF:0000024
Mad2l2Ratnegative regulation of transcription by competitive promoter binding involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:19443654RGDPMID:19443654
Mad2l2Ratnegative regulation of transcription by RNA polymerase II involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:19443654RGDPMID:19443654
Mad2l2Ratnegative regulation of ubiquitin protein ligase activity involved_inISSUniProtKB:Q9UI951600115GO_REF:0000024UniProtGO_REF:0000024
Mad2l2Ratnegative regulation of ubiquitin protein ligase activity involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:11459826RGDPMID:11459826
Mad2l2Ratpositive regulation of DNA-templated transcription involved_inISSUniProtKB:Q9UI951600115GO_REF:0000024UniProtGO_REF:0000024
Mad2l2Ratpositive regulation of DNA-templated transcription involved_inISOMAD2L2 (Homo sapiens)1624291 PMID:17296730RGDPMID:17296730
1 to 20 of 29 rows

Cellular Component
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mad2l2Ratanaphase-promoting complex located_inISSUniProtKB:Q9UI951600115GO_REF:0000024UniProtGO_REF:0000024
Mad2l2Ratanaphase-promoting complex located_inISOMAD2L2 (Homo sapiens)1624291 PMID:11459825RGDPMID:11459825
Mad2l2Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Mad2l2Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Mad2l2Ratcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
Mad2l2Ratnucleoplasm located_inISOMAD2L2 (Homo sapiens)1624291 RGDGO_REF:0000052
Mad2l2Ratnucleus located_inISOMAD2L2 (Homo sapiens)1624291 PMID:17541814 and PMID:19443654RGDPMID:17541814 and PMID:19443654
Mad2l2Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Mad2l2Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Mad2l2Ratnucleus located_inISSUniProtKB:Q9UI951600115GO_REF:0000024UniProtGO_REF:0000024
Mad2l2Ratspindle located_inIEAUniProtKB-SubCell:SL-02511600115GO_REF:0000044UniProtGO_REF:0000044
Mad2l2Ratspindle located_inISOMAD2L2 (Homo sapiens)1624291 PMID:21063390RGDPMID:21063390
Mad2l2Ratspindle located_inISSUniProtKB:Q9UI951600115GO_REF:0000024UniProtGO_REF:0000024
Mad2l2Ratzeta DNA polymerase complex part_ofISOMAD2L2 (Homo sapiens)1624291 PMID:20164194 and PMID:24449906RGDPMID:20164194 and PMID:24449906
Mad2l2Ratzeta DNA polymerase complex part_ofISSUniProtKB:Q9UI951600115GO_REF:0000024UniProtGO_REF:0000024
Mad2l2Ratzeta DNA polymerase complex part_ofIBAFB:FBgn0037345 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
1 to 16 of 16 rows

Molecular Function

  

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mad2l2Ratcell cycle pathway, mitotic  IEA 6907045 KEGGrno:04110

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. MAD2B promotes tubular epithelial-to-mesenchymal transition and renal tubulointerstitial fibrosis via Skp2. Tang H, etal., J Mol Med (Berl). 2016 Nov;94(11):1297-1307. doi: 10.1007/s00109-016-1448-6. Epub 2016 Aug 3.
PMID:11459825   PMID:11459826   PMID:12477932   PMID:15988022   PMID:17296730   PMID:17541814   PMID:19443654   PMID:20164194   PMID:21063390   PMID:24444371   PMID:25651564   PMID:27957796  
PMID:29656893  



Mad2l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85163,846,678 - 163,859,851 (+)NCBIGRCr8
mRatBN7.25158,563,545 - 158,576,698 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5158,563,567 - 158,576,693 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5161,288,790 - 161,293,471 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05163,110,607 - 163,115,262 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05163,066,954 - 163,071,609 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05164,943,183 - 164,956,255 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5164,950,917 - 164,956,255 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05168,601,233 - 168,614,293 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45165,218,362 - 165,222,828 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15165,228,549 - 165,233,014 (+)NCBI
Celera5156,851,516 - 156,855,981 (+)NCBICelera
Cytogenetic Map5q36NCBI
MAD2L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,674,480 - 11,691,830 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,657,230 - 11,691,811 (-)EnsemblGRCh38hg38GRCh38
GRCh37111,734,537 - 11,751,616 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,657,124 - 11,663,780 (-)NCBINCBI36Build 36hg18NCBI36
Build 34111,668,802 - 11,675,459NCBI
Celera110,846,601 - 10,863,739 (-)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef110,888,642 - 10,905,769 (-)NCBIHuRef
CHM1_1111,722,539 - 11,739,685 (-)NCBICHM1_1
T2T-CHM13v2.0111,218,548 - 11,235,917 (-)NCBIT2T-CHM13v2.0
Mad2l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394148,214,615 - 148,230,161 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4148,214,841 - 148,230,156 (+)EnsemblGRCm39 Ensembl
GRCm384148,130,158 - 148,145,704 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4148,130,384 - 148,145,699 (+)EnsemblGRCm38mm10GRCm38
MGSCv374147,514,599 - 147,519,805 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364146,984,290 - 146,989,496 (+)NCBIMGSCv36mm8
Celera4150,401,823 - 150,407,027 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.67NCBI
Mad2l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554862,191,903 - 2,198,538 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554862,191,903 - 2,197,193 (+)NCBIChiLan1.0ChiLan1.0
MAD2L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21216,532,737 - 216,550,231 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,178,858 - 215,196,364 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0110,436,532 - 10,454,023 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1111,654,963 - 11,671,364 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl111,654,963 - 11,661,526 (-)Ensemblpanpan1.1panPan2
MAD2L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,539,724 - 84,549,402 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl284,545,226 - 84,549,356 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,076,962 - 81,081,699 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0285,207,730 - 85,212,516 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl285,201,068 - 85,212,508 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,956,536 - 81,961,266 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0282,957,166 - 82,961,884 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0284,020,037 - 84,024,757 (+)NCBIUU_Cfam_GSD_1.0
Mad2l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505834,713,906 - 34,718,120 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936474538,625 - 542,901 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936474538,703 - 542,901 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAD2L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl671,773,154 - 71,786,517 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1671,773,680 - 71,779,192 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2665,692,635 - 65,698,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAD2L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120120,099,928 - 120,115,954 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20120,110,269 - 120,116,083 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605423,977,591 - 23,984,254 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mad2l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248181,282,082 - 1,286,997 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248181,274,553 - 1,286,750 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Mad2l2
47 total Variants

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:56
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000012193, ENSRNOT00000055658
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat

1 to 10 of 24 rows
RH132073  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85163,859,350 - 163,859,651 (+)Marker Load Pipeline
mRatBN7.25158,576,197 - 158,576,498 (+)MAPPERmRatBN7.2
Rnor_6.05164,955,755 - 164,956,055NCBIRnor6.0
Rnor_5.05168,613,793 - 168,614,093UniSTSRnor5.0
RGSC_v3.45165,222,328 - 165,222,628UniSTSRGSC3.4
Celera5156,855,481 - 156,855,781UniSTS
RH 3.4 Map51107.5UniSTS
Cytogenetic Map5q36UniSTS
RH133258  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25158,576,936 - 158,577,117 (+)MAPPERmRatBN7.2
Rnor_6.05164,956,494 - 164,956,674NCBIRnor6.0
Rnor_5.05168,614,532 - 168,614,712UniSTSRnor5.0
RGSC_v3.45165,223,067 - 165,223,247UniSTSRGSC3.4
Celera5156,856,220 - 156,856,400UniSTS
RH 3.4 Map51104.4UniSTS
Cytogenetic Map5q36UniSTS
Mad2l2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25158,572,165 - 158,572,310 (+)MAPPERmRatBN7.2
Rnor_6.05164,951,723 - 164,951,867NCBIRnor6.0
Rnor_5.05168,609,761 - 168,609,905UniSTSRnor5.0
Celera5156,851,450 - 156,851,594UniSTS
Cytogenetic Map5q36UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 16 of 16 rows
RefSeq Transcripts NM_001012106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC094126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENSRNOT00000012193   ⟹   ENSRNOP00000012193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5164,951,874 - 164,956,248 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000055658   ⟹   ENSRNOP00000052521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5158,563,567 - 158,576,677 (+)Ensembl
Rnor_6.0 Ensembl5164,951,789 - 164,956,255 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076305   ⟹   ENSRNOP00000068004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5164,951,768 - 164,954,766 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083678   ⟹   ENSRNOP00000070808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5158,563,576 - 158,576,693 (+)Ensembl
Rnor_6.0 Ensembl5164,950,917 - 164,956,147 (+)Ensembl
RefSeq Acc Id: NM_001012106   ⟹   NP_001012106
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,855,170 - 163,859,851 (+)NCBI
mRatBN7.25158,572,017 - 158,576,698 (+)NCBI
Rnor_6.05164,951,789 - 164,956,255 (+)NCBI
Rnor_5.05168,601,233 - 168,614,293 (+)NCBI
RGSC_v3.45165,218,362 - 165,222,828 (+)RGD
Celera5156,851,516 - 156,855,981 (+)RGD
Sequence:
RefSeq Acc Id: NM_001394241   ⟹   NP_001381170
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,855,170 - 163,859,851 (+)NCBI
mRatBN7.25158,572,017 - 158,576,698 (+)NCBI
RefSeq Acc Id: XM_039110095   ⟹   XP_038966023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,846,678 - 163,859,831 (+)NCBI
mRatBN7.25158,563,545 - 158,576,693 (+)NCBI
RefSeq Acc Id: XM_063287824   ⟹   XP_063143894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,846,719 - 163,859,403 (+)NCBI
RefSeq Acc Id: XM_063287825   ⟹   XP_063143895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,846,719 - 163,859,403 (+)NCBI
RefSeq Acc Id: XM_063287826   ⟹   XP_063143896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,850,103 - 163,859,403 (+)NCBI
RefSeq Acc Id: XM_063287827   ⟹   XP_063143897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,852,660 - 163,859,403 (+)NCBI
RefSeq Acc Id: XM_063287828   ⟹   XP_063143898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,846,719 - 163,859,831 (+)NCBI
RefSeq Acc Id: XM_063287829   ⟹   XP_063143899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,852,639 - 163,859,831 (+)NCBI
RefSeq Acc Id: XM_063287830   ⟹   XP_063143900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,850,296 - 163,859,831 (+)NCBI
RefSeq Acc Id: XM_063287831   ⟹   XP_063143901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,850,077 - 163,859,831 (+)NCBI
RefSeq Acc Id: XM_063287832   ⟹   XP_063143902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,855,573 - 163,859,403 (+)NCBI
1 to 5 of 16 rows
1 to 5 of 16 rows
RefSeq Acc Id: NP_001012106   ⟸   NM_001012106
- Peptide Label: isoform 2
- UniProtKB: D3Z8D9 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052521   ⟸   ENSRNOT00000055658
Ensembl Acc Id: ENSRNOP00000012193   ⟸   ENSRNOT00000012193
Ensembl Acc Id: ENSRNOP00000070808   ⟸   ENSRNOT00000083678
Ensembl Acc Id: ENSRNOP00000068004   ⟸   ENSRNOT00000076305
HORMA

Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8D9-F1-model_v2 AlphaFold D3Z8D9 1-211 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13694264
Promoter ID:EPDNEW_R4782
Type:multiple initiation site
Name:Mad2l2_1
Description:mitotic arrest deficient 2 like 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05164,951,770 - 164,951,830EPDNEW


1 to 24 of 24 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-39175 BioCyc
Ensembl Genes ENSRNOG00000009134 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000055658.5 UniProtKB/Swiss-Prot
  ENSRNOT00000083678 ENTREZGENE
  ENSRNOT00000083678.2 UniProtKB/Swiss-Prot
  ENSRNOT00000123467 ENTREZGENE
Gene3D-CATH 3.30.900.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7307981 IMAGE-MGC_LOAD
InterPro HORMA_dom UniProtKB/Swiss-Prot
  HORMA_dom_sf UniProtKB/Swiss-Prot
  Mad2-like UniProtKB/Swiss-Prot
KEGG Report rno:313702 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105558 IMAGE-MGC_LOAD
NCBI Gene 313702 ENTREZGENE
PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B UniProtKB/Swiss-Prot
  PTHR11842 UniProtKB/Swiss-Prot
Pfam HORMA UniProtKB/Swiss-Prot
PhenoGen Mad2l2 PhenoGen
PROSITE HORMA UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009134 RatGTEx
Superfamily-SCOP SSF56019 UniProtKB/Swiss-Prot
UniProt D3Z8D9 ENTREZGENE, UniProtKB/Swiss-Prot
  Q5PPH8 ENTREZGENE
UniProt Secondary Q5PPH8 UniProtKB/Swiss-Prot
1 to 24 of 24 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-29 Mad2l2  mitotic arrest deficient 2 like 2  Mad2l2  MAD2 mitotic arrest deficient-like 2 (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Mad2l2  MAD2 mitotic arrest deficient-like 2 (yeast)  Mad2l2_predicted  MAD2 mitotic arrest deficient-like 2 (yeast) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Mad2l2_predicted  MAD2 mitotic arrest deficient-like 2 (yeast) (predicted)      Symbol and Name status set to approved 70820 APPROVED