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Gene: Tecpr1 (tectonin beta-propeller repeat containing 1) Rattus norvegicus

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Symbol:

Tecpr1

Name:

tectonin beta-propeller repeat containing 1

RGD ID:

1306873

Description:

Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in autophagosome maturation and regulation of autophagosome maturation. Predicted to be located in nucleoplasm. Predicted to be active in autophagosome membrane and lysosomal membrane. Orthologous to human TECPR1 (tectonin beta-propeller repeat containing 1); INTERACTS WITH 1-benzylpiperazine; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC304285; MGC124730; RGD1306873; similar to RIKEN cDNA 2210010N04 gene; tectonin beta-propeller repeat-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	15,504,456 - 15,534,541 (+)	NCBI		GRCr8
mRatBN7.2	12	10,391,587 - 10,420,462 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	10,391,696 - 10,419,611 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	11,198,869 - 11,226,872 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	11,822,165 - 11,850,168 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	10,845,551 - 10,873,599 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	12,374,132 - 12,403,382 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	12,374,790 - 12,402,552 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	14,426,445 - 14,454,202 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	10,719,095 - 10,747,027 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	10,736,154 - 10,776,251 (+)	NCBI
Celera	12	12,190,848 - 12,218,752 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tecpr1	Rat	pleomorphic xanthoastrocytoma		ISO	RGD:1601877	8554872	ClinVar Annotator: match by term: Pleomorphic xanthoastrocytoma	ClinVar	PMID:28299358
Tecpr1	Rat	Tracheoesophageal Fistula		ISO	RGD:1601877	8554872	ClinVar Annotator: match by term: Tracheoesophageal fistula	ClinVar	PMID:32641753

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tecpr1	Rat	1-benzylpiperazine	increases expression	EXP		6480464	N-benzylpiperazine results in increased expression of TECPR1 mRNA	CTD	PMID:26821219
Tecpr1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of TECPR1 mRNA	CTD	PMID:34747641
Tecpr1	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of TECPR1 mRNA	CTD	PMID:33387578
Tecpr1	Rat	3,3',5,5'-tetrabromobisphenol A	increases expression	ISO	RGD:1315739	6480464	tetrabromobisphenol A results in increased expression of TECPR1 mRNA	CTD	PMID:25172293
Tecpr1	Rat	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of TECPR1 mRNA	CTD	PMID:28959563
Tecpr1	Rat	Aflatoxin B2 alpha	decreases methylation	ISO	RGD:1601877	6480464	aflatoxin B2 results in decreased methylation of TECPR1 intron	CTD	PMID:30157460
Tecpr1	Rat	amphetamine	decreases expression	EXP		6480464	Amphetamine results in decreased expression of TECPR1 mRNA	CTD	PMID:30779732
Tecpr1	Rat	benzo[a]pyrene	multiple interactions	ISO	RGD:1315739	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of more ...	CTD	PMID:27858113
Tecpr1	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1601877	6480464	Benzo(a)pyrene affects the methylation of TECPR1 5' UTR	CTD	PMID:27901495
Tecpr1	Rat	benzo[b]fluoranthene	decreases expression	ISO	RGD:1315739	6480464	benzo(b)fluoranthene results in decreased expression of TECPR1 mRNA	CTD	PMID:26377693
Tecpr1	Rat	benzo[b]fluoranthene	multiple interactions	ISO	RGD:1315739	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of more ...	CTD	PMID:27858113
Tecpr1	Rat	beta-lapachone	decreases expression	ISO	RGD:1601877	6480464	beta-lapachone results in decreased expression of TECPR1 mRNA	CTD	PMID:38218311
Tecpr1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of TECPR1 mRNA	CTD	PMID:25181051
Tecpr1	Rat	bisphenol A	decreases methylation	ISO	RGD:1601877	6480464	bisphenol A results in decreased methylation of TECPR1 gene	CTD	PMID:31601247
Tecpr1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of TECPR1 mRNA	CTD	PMID:30816183\|PMID:34947998
Tecpr1	Rat	cadmium dichloride	increases expression	ISO	RGD:1601877	6480464	Cadmium Chloride results in increased expression of TECPR1 mRNA	CTD	PMID:38568856
Tecpr1	Rat	carbon nanotube	decreases expression	ISO	RGD:1315739	6480464	Nanotubes, Carbon analog results in decreased expression of TECPR1 mRNA; Nanotubes, Carbon results in decreased more ...	CTD	PMID:25554681
Tecpr1	Rat	chrysene	multiple interactions	ISO	RGD:1315739	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of more ...	CTD	PMID:27858113
Tecpr1	Rat	cisplatin	decreases expression	ISO	RGD:1601877	6480464	Cisplatin results in decreased expression of TECPR1 mRNA	CTD	PMID:27392435
Tecpr1	Rat	clothianidin	decreases expression	ISO	RGD:1601877	6480464	clothianidin results in decreased expression of TECPR1 mRNA	CTD	PMID:31626844
Tecpr1	Rat	crocidolite asbestos	decreases expression	ISO	RGD:1601877	6480464	Asbestos, Crocidolite results in decreased expression of TECPR1 mRNA	CTD	PMID:29523930
Tecpr1	Rat	diclofenac	decreases expression	ISO	RGD:1315739	6480464	Diclofenac results in decreased expression of TECPR1 mRNA	CTD	PMID:35537566
Tecpr1	Rat	diuron	decreases expression	EXP		6480464	Diuron results in decreased expression of TECPR1 mRNA	CTD	PMID:25152437
Tecpr1	Rat	doxorubicin	decreases expression	ISO	RGD:1601877	6480464	Doxorubicin results in decreased expression of TECPR1 mRNA	CTD	PMID:29803840
Tecpr1	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of TECPR1 mRNA	CTD	PMID:29391264
Tecpr1	Rat	ethanol	affects splicing	ISO	RGD:1315739	6480464	Ethanol affects the splicing of TECPR1 mRNA	CTD	PMID:30319688
Tecpr1	Rat	fipronil	increases expression	EXP		6480464	fipronil results in increased expression of TECPR1 mRNA	CTD	PMID:34044035
Tecpr1	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of TECPR1 mRNA	CTD	PMID:33387578
Tecpr1	Rat	glyphosate	affects methylation	EXP		6480464	Glyphosate affects the methylation of TECPR1 gene	CTD	PMID:35440735
Tecpr1	Rat	manganese(II) chloride	decreases expression	EXP		6480464	manganese chloride results in decreased expression of TECPR1 mRNA	CTD	PMID:28801915
Tecpr1	Rat	methamphetamine	increases expression	ISO	RGD:1315739	6480464	Methamphetamine results in increased expression of TECPR1 mRNA	CTD	PMID:26307267
Tecpr1	Rat	N-methyl-4-phenylpyridinium	increases expression	EXP		6480464	1-Methyl-4-phenylpyridinium results in increased expression of TECPR1 mRNA	CTD	PMID:28801915
Tecpr1	Rat	ozone	multiple interactions	ISO	RGD:1315739	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased more ...	CTD	PMID:34911549
Tecpr1	Rat	ozone	multiple interactions	ISO	RGD:1601877	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of TECPR1 mRNA	CTD	PMID:35430440
Tecpr1	Rat	pentachlorophenol	increases expression	ISO	RGD:1315739	6480464	Pentachlorophenol results in increased expression of TECPR1 mRNA	CTD	PMID:23892564
Tecpr1	Rat	pirinixic acid	multiple interactions	ISO	RGD:1315739	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in more ...	CTD	PMID:19710929
Tecpr1	Rat	pirinixic acid	multiple interactions	ISO	RGD:1601877	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in more ...	CTD	PMID:19710929
Tecpr1	Rat	senecionine	increases expression	ISO	RGD:1315739	6480464	senecionine results in increased expression of TECPR1 protein	CTD	PMID:35357534
Tecpr1	Rat	sevoflurane	increases expression	ISO	RGD:1315739	6480464	Sevoflurane results in increased expression of TECPR1 protein	CTD	PMID:35249202
Tecpr1	Rat	silicon dioxide	increases expression	ISO	RGD:1315739	6480464	Silicon Dioxide results in increased expression of TECPR1 mRNA	CTD	PMID:29203145
Tecpr1	Rat	sodium arsenite	increases expression	ISO	RGD:1601877	6480464	sodium arsenite results in increased expression of TECPR1 mRNA	CTD	PMID:34032870
Tecpr1	Rat	sunitinib	increases expression	ISO	RGD:1601877	6480464	Sunitinib results in increased expression of TECPR1 mRNA	CTD	PMID:31533062
Tecpr1	Rat	tetraphene	multiple interactions	ISO	RGD:1315739	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of more ...	CTD	PMID:27858113
Tecpr1	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of TECPR1 mRNA	CTD	PMID:34492290
Tecpr1	Rat	titanium dioxide	increases methylation	ISO	RGD:1315739	6480464	titanium dioxide results in increased methylation of TECPR1 promoter	CTD	PMID:35295148
Tecpr1	Rat	titanium dioxide	decreases methylation	ISO	RGD:1315739	6480464	titanium dioxide results in decreased methylation of TECPR1 gene	CTD	PMID:35295148
Tecpr1	Rat	tributylstannane	increases expression	EXP		6480464	tributyltin results in increased expression of TECPR1 mRNA	CTD	PMID:21683754
Tecpr1	Rat	triphenyl phosphate	affects expression	ISO	RGD:1601877	6480464	triphenyl phosphate affects the expression of TECPR1 mRNA	CTD	PMID:37042841
Tecpr1	Rat	trovafloxacin	decreases expression	ISO	RGD:1315739	6480464	trovafloxacin results in decreased expression of TECPR1 mRNA	CTD	PMID:35537566
Tecpr1	Rat	valproic acid	increases expression	ISO	RGD:1315739	6480464	Valproic Acid results in increased expression of TECPR1 mRNA	CTD	PMID:21427059
Tecpr1	Rat	vinclozolin	affects expression	EXP		6480464	vinclozolin affects the expression of TECPR1 mRNA	CTD	PMID:19015723

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tecpr1	Rat	autophagosome maturation	involved_in	ISS	UniProtKB:Q7Z6L1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Tecpr1	Rat	autophagosome maturation	involved_in	IBA	PANTHER:PTN002758064\|UniProtKB:Q7Z6L1	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Tecpr1	Rat	autophagosome maturation	involved_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tecpr1	Rat	autophagosome maturation	involved_in	ISO	RGD:1601877	1624291	PMID:22342342	RGD	PMID:22342342
Tecpr1	Rat	autophagy	involved_in	ISS	UniProtKB:Q7Z6L1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Tecpr1	Rat	autophagy	involved_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tecpr1	Rat	autophagy	involved_in	IEA	UniProtKB-KW:KW-0072	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Tecpr1	Rat	autophagy	involved_in	ISO	RGD:1601877	1624291	PMID:21575909	RGD	PMID:21575909
Tecpr1	Rat	macroautophagy	involved_in	ISO	RGD:1601877	1624291	PMID:25484072	RGD	PMID:25484072
Tecpr1	Rat	macroautophagy	involved_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tecpr1	Rat	regulation of autophagosome maturation	involved_in	ISO	RGD:1601877	1624291	PMID:22342342	RGD	PMID:22342342
Tecpr1	Rat	regulation of autophagosome maturation	involved_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tecpr1	Rat	autophagosome membrane	located_in	ISS	UniProtKB:Q7Z6L1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Tecpr1	Rat	autophagosome membrane	located_in	IEA	UniProtKB-SubCell:SL-0022	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Tecpr1	Rat	autophagosome membrane	is_active_in	IBA	PANTHER:PTN002758064\|UniProtKB:Q7Z6L1	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Tecpr1	Rat	autophagosome membrane	located_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tecpr1	Rat	autophagosome membrane	located_in	ISO	RGD:1601877	1624291	PMID:21575909, PMID:22342342	RGD	PMID:21575909\|PMID:22342342
Tecpr1	Rat	bounding membrane of organelle	located_in	IEA	ARBA:ARBA00027281	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Tecpr1	Rat	cytoplasm	located_in	IEA	ARBA:ARBA00026971	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Tecpr1	Rat	cytoplasmic vesicle	located_in	IEA	UniProtKB-KW:KW-0968	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Tecpr1	Rat	lysosomal membrane	located_in	ISS	UniProtKB:Q7Z6L1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Tecpr1	Rat	lysosomal membrane	located_in	IEA	UniProtKB-SubCell:SL-0157	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Tecpr1	Rat	lysosomal membrane	is_active_in	IBA	PANTHER:PTN002758064\|UniProtKB:Q7Z6L1	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Tecpr1	Rat	lysosomal membrane	located_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tecpr1	Rat	lysosomal membrane	located_in	ISO	RGD:1601877	1624291	PMID:22342342	RGD	PMID:22342342
Tecpr1	Rat	lysosome	located_in	IEA	UniProtKB-KW:KW-0458	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Tecpr1	Rat	membrane	located_in	IEA	InterPro:IPR006614	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Tecpr1	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Tecpr1	Rat	nucleoplasm	located_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tecpr1	Rat	nucleoplasm	located_in	ISO	RGD:1601877\|UniProtKB:Q7Z6L1-1	1624291		RGD	GO_REF:0000052

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tecpr1	Rat	lipid binding	enables	IEA	UniProtKB-KW:KW-0446	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Tecpr1	Rat	phosphatidylinositol-3-phosphate binding	enables	ISS	UniProtKB:Q7Z6L1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Tecpr1	Rat	phosphatidylinositol-3-phosphate binding	enables	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tecpr1	Rat	phosphatidylinositol-3-phosphate binding	enables	IBA	PANTHER:PTN002758064\|UniProtKB:Q7Z6L1	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Tecpr1	Rat	phosphatidylinositol-3-phosphate binding	enables	ISO	RGD:1601877	1624291	PMID:22342342	RGD	PMID:22342342
Tecpr1	Rat	protein binding	enables	ISO	RGD:1601877	1624291	UniProtKB:Q9H1Y0\|UniProtKB:Q9NT62\|UniProtKB:Q9Y4P8 PMID:20562859, PMID:21575909, PMID:22342342, PMID:32296183, PMID:33961781	RGD	PMID:20562859\|PMID:21575909\|PMID:22342342\|PMID:32296183\|PMID:33961781

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:21575909	PMID:22342342

Tecpr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	15,504,456 - 15,534,541 (+)	NCBI		GRCr8
mRatBN7.2	12	10,391,587 - 10,420,462 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	10,391,696 - 10,419,611 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	11,198,869 - 11,226,872 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	11,822,165 - 11,850,168 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	10,845,551 - 10,873,599 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	12,374,132 - 12,403,382 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	12,374,790 - 12,402,552 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	14,426,445 - 14,454,202 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	10,719,095 - 10,747,027 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	10,736,154 - 10,776,251 (+)	NCBI
Celera	12	12,190,848 - 12,218,752 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

TECPR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	98,214,624 - 98,252,232 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	98,214,624 - 98,252,232 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	97,843,936 - 97,881,544 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	97,683,972 - 97,719,404 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	92,539,935 - 92,575,367 (-)	NCBI		Celera
Cytogenetic Map	7	q21.3	NCBI
HuRef	7	92,445,624 - 92,482,323 (-)	NCBI		HuRef
CHM1_1	7	97,774,799 - 97,811,769 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	99,444,762 - 99,482,933 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	97,169,633 - 97,206,440 (-)	NCBI

Tecpr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	144,131,260 - 144,160,433 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	144,131,260 - 144,160,433 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	144,194,442 - 144,223,615 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	144,194,442 - 144,223,615 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	144,956,191 - 144,984,447 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	144,447,967 - 144,477,142 (-)	NCBI		MGSCv36	mm8
Celera	5	141,179,701 - 141,207,966 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	83.07	NCBI

Tecpr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	14,106,711 - 14,138,033 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	14,106,711 - 14,137,983 (-)	NCBI	ChiLan1.0	ChiLan1.0

TECPR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	116,061,930 - 116,098,903 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	164,326,564 - 164,363,553 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	6,269,935 - 6,306,941 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	103,680,161 - 103,716,572 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	103,680,156 - 103,716,572 (-)	Ensembl	panpan1.1		panPan2

TECPR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	11,086,498 - 11,112,236 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	11,086,423 - 11,112,241 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	12,712,441 - 12,738,602 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	11,086,505 - 11,112,680 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	11,086,464 - 11,112,670 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	10,955,215 - 10,981,372 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	10,935,026 - 10,961,189 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	11,169,072 - 11,195,233 (+)	NCBI		UU_Cfam_GSD_1.0

Tecpr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	139,163,869 - 139,188,658 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	756,072 - 781,549 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	756,602 - 781,422 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TECPR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	5,414,074 - 5,442,943 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	5,414,071 - 5,442,953 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	5,473,363 - 5,500,906 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TECPR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	14,912,281 - 14,953,427 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	14,912,529 - 14,956,059 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	1,123,889 - 1,163,984 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tecpr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	31,676,044 - 31,704,820 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	31,676,044 - 31,704,828 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Tecpr1
101 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	116
Count of miRNA genes:	93
Interacting mature miRNAs:	108
Transcripts:	ENSRNOT00000001347
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	19611090	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	9318216	12829686	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
1600391	Edcs2	Endometrial carcinoma susceptibility QTL2	3.5	0.01	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	12	6833190	17870186	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	36247923	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat

D12Got13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	10,395,695 - 10,395,989 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	12,378,790 - 12,379,083	NCBI	Rnor6.0
Rnor_5.0	12	14,430,445 - 14,430,738	UniSTS	Rnor5.0
RGSC_v3.4	12	10,723,096 - 10,723,389	UniSTS	RGSC3.4
Celera	12	12,194,848 - 12,195,141	UniSTS
RH 3.4 Map	12	121.7	RGD
RH 3.4 Map	12	121.7	UniSTS
RH 2.0 Map	12	102.3	RGD
Cytogenetic Map	12	p11	UniSTS

RH138737

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	10,419,216 - 10,419,463 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	12,402,137 - 12,402,383	NCBI	Rnor6.0
Rnor_5.0	12	14,453,792 - 14,454,038	UniSTS	Rnor5.0
RGSC_v3.4	12	10,746,617 - 10,746,863	UniSTS	RGSC3.4
Celera	12	12,218,343 - 12,218,589	UniSTS
Cytogenetic Map	12	p11	UniSTS

AU048696

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	10,392,714 - 10,392,851 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	12,375,809 - 12,375,945	NCBI	Rnor6.0
Rnor_5.0	12	14,427,464 - 14,427,600	UniSTS	Rnor5.0
RGSC_v3.4	12	10,720,114 - 10,720,250	UniSTS	RGSC3.4
Celera	12	12,191,867 - 12,192,003	UniSTS
Cytogenetic Map	12	p11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001037191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC103478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001347 ⟹ ENSRNOP00000001347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	10,391,696 - 10,419,611 (+)	Ensembl
Rnor_6.0 Ensembl	12	12,374,790 - 12,402,552 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	12,399,833 - 12,401,480 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092700

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	12,398,190 - 12,401,535 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	12,396,687 - 12,398,551 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	12,394,006 - 12,396,994 (+)	Ensembl

RefSeq Acc Id:

NM_001037191 ⟹ NP_001032268

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,505,354 - 15,533,285 (+)	NCBI
mRatBN7.2	12	10,391,696 - 10,419,627 (+)	NCBI
Rnor_6.0	12	12,374,790 - 12,402,547 (+)	NCBI
Rnor_5.0	12	14,426,445 - 14,454,202 (+)	NCBI
RGSC_v3.4	12	10,719,095 - 10,747,027 (+)	RGD
Celera	12	12,190,848 - 12,218,752 (+)	RGD

Sequence:

show sequence

GTTCAGAAGCCTCCGCTGGGAACCCGCCCCGCCGGGCGTGGGCCCAGTGCTGCGGCCATGCCCACCTCCATGCTGTGGGCAGTGGACCTCTTCGGGAGAGTGTATACACTGTCAACGGCCGGTCAGTA
CTGGGAGCTGTGCAAGGATGTCCAGTTGGAGTTCAAGCGGGTCAGTGCGGCCACTCAGTGCTGCTGGGGCATCGCCTGCGACAACCAGGTCTACTTATATGTGTGCTCCAGCGATGTGCCCATCCGTC
ACAGAGAGGAGGCCTATGAGAATCAGCGTTGGAACCCCATGGGAGGCTTCTGTGAGAAGCTCCTGCCAAGTGACCGCTGGTCGTGGAGTGACGTGAGTGGGCTCCAGCATCGGCCGCTGGATGGCGTA
GCACTGCCTTCGCCATACTGGGAATGGGAGTCAGACTGGTACGTGGATGAGAATTTTGGAGGGGAGCCCACCGAGAAAGGGGGGTGGACATACGCTATGGACTTCCCTGCTACCTACACTAGAGACAA
GAAATGGAATTCATGCGTGCGAAGGCGGAAGTGGATCCGGTATAGGAGATACAAATCCCGGGACACCTGGGCCAAGATCCCCTCAAAGGATGACCCCAAGGAACTCCCTGACCCCTTCAATGATCTGT
CTGTAGGAGGGTGGGAGATCACAGAAGAACCTGTAGGCCGCCTGTCAGTGTGGGCTGTATCCTTGCAGGGGAAGGTGTGGTACCGAGAGAACGTTAGCCACCCCAATCCAGAAGGTTCCTCCTGGTCT
CTTGTGGATACCCCAGGGGAAGTGGTCCAGATCAGCTGTGGGCCCCACGACCTTATATGGGCCACCCTCTGGGAGGGGCAGGCTCTGGTCAGAGAAGGAATCTGCAGGAACAACCCCAAAGGAAATTC
CTGGTCCATAGTGGAGCCTCCTGGGTCTGAAAATGGCATCATGCACGTCTCTGCGGGAGTCAGTGTGGTCTGGGCCATCACAAAGGACCGCAAAGTGTGGTTCCGGAGGGGCGTCAACTCTCACAACC
CCTGTGGCACCAGCTGGATCGAGATGGTCGGAGAGATGACCATGGTGAACGTGGGGCTGAATGACCAGGTCTGGGGTATCAGCTGTGAGGACCGAGCTGTATACTTCCGGCAGGGTGTCACTCCCAGC
GAGCTCAGTGGGAAGACATGGAAGGCCATCGTCGTGGGCCGAGAAAGTGACCGGTCACACTCTGGCAGCTCGTCCAGTCTCCTCAGTGCTGGCTGCTTCTTCGGCGAGGAGGTGAGGGGCAGTGGTAC
GGAATCTGCACCCAGTGACACCGATGCCTCCTCGGAAGTCGAGAGACAGGGCCCCGAACGGTCTCTCCCCAAAGAATCTTTGGATAATTCCAGGAACCTTAAAGGAAGCTCGTCCAAGGGCCACGAGA
GCACCAGGAACACTGAGGACCCCATGGAGAACGCCTGCCTGGCTGAGGGCCAAGCAAAGGCTCCCAAGACCTCTGGCCCTGATGAGTGCCATGGCCCAGCCCCCACGCCAGCTGAGCTGCCCTGGACC
AACATTGACCTAAAGGAGCCTAAGAAGGCGTCTAACCAGCCAGCTGCCGGCTTTCCTGAGACTTCGGGCCTCTCCTCCCTAGGGCTGTTCCCGATGGGCATGGAAGAGCCCTATGGGGCAGACGACCA
TCCTCTGTGGGCCTGGGTGTCTGGAGGTGGATGTGCGGTGGAAGCGGGCTCTGCTCTCAAGTGGTTCACTGTCCAGTCAGGCCTATCCCCCTCAGTGCAGACGTTGTCCCTGTCCATCACACCCGCCC
AGACCGCTGCCTGGAGGAAACAGATCTTCCAGCAGCTCACGGAGAGGACCAAGCGAGAGCTGGAGAGCTTCAGACACTATGAACAGGCCGTAGAGCAGTCGGTGTGGGTGAAGACGGGGGCCCTGCAG
TGGTGGTGCGACTGGAAGCCCCACAAGTGGGTGGACGTCCGTGTGGCCCTGGAGCAGTTCACAGGGCATGACGGGGCTCGAGACAGCATCCTCTTCATCTATTACGTGGTCCATGAGGAAAAGAAGTA
CCTACACGTGTTCCTGAATGAGGTGACCGTGCTGGTCCCCGTGCTTAATGAAGCCAAGCACTCCTTTGCCCTCTACACCCCCGAAAGGACCAGACAGAGGTGGCCCGTACGCCTGGCTGCCACCACTG
AGCAAGACATGAATGACTGGCTTACCCTGCTCAGCCTGTCCTGCTGCGAGAGCCGGAAGGTCCACGGACGCCCGTCCCTGCAGGCCATCTGGTCTGTCACTTGCAAGGGTGACATCTTTGTGAGTGAG
CCCAGCCCAGACCTGGAAGCCCATGAGCACCTGCTACCCTGCGACCAGATGTTCTGGCGACAGATGGGAGGCCACCTGCGGATCATAGAGGCCAACAGCCGAGGCGTGGTGTGGGGCATCGGCTATGA
TCACACAGCATGGGTGTACACAGGCGGCTATGGCGGAGGCTGCTTCCAAGGCCTGGCCAGCAGCACCAGCAACATTTATACACAGTCGGACGTGAAGAGCGTCTACATCTATGAGAACCAGCGTTGGA
ACCCTGTCACGGGCTATACCAGCAGGGGTCTGCCCACTGACCGGTACATGTGGAGTGATGTCACAGGGCTACAAGAATGCACCAAGGCCGGCACAAAGCCCCCATCCCTGCAGTGGACTTGGGTTTCT
GACTGGTATGTGGACTTCAGTGTCCTCGGAGGCACCGATCAGGAAGGATGGCAGTACGCCAGTGATTTCCCTGCCTCTTACCACGGGTACAAAACCATGAAGGATTTTGTCAGGAGAAGGTGCTGGGC
CAGAAAATGCAAGCTGGTGACCAGCGGGCCGTGGCTGGAGGTGGCCCCCATCGCCCTCAGCGATGTGTCCATCATCCCCGAGAGTGCAGATGCTAATGGGAGAGGACACAATATTGCACTGTGGGCCG
TCAGTGACAAGGGGGACGTCCTGTGCCGCCTGGGTGTGTCTGAACTCAACCCTGCGGGCTCCTCCTGGCTGCATGTGGGCACTGACCAGCCCTTTGCCTCTGTCTCTATCGGAGCCTGCTATCAGGTG
TGGGCTGTGGCCAGGGATGGCTCTGCATTCTACCGGGGCTCTGTGTCTCCTTCCCAGCCAGCTGGTGACTGCTGGTACCACATCCCATCTCCTCCCAAGCAGAAGCTCACACAAGTGTCTGTGGGCCA
GACATCAGTTTATGCCTTGGATGAAAACGGGAACCTGTGGTACCGAGCAGGGATCACCCCCAGCTACCCGCAGGGCTCCAGCTGGGAGCACGTGTCCAACAATGTACGCAAAGTGTCTGTGGGGCCAC
TGGACCAGGTCTGGGTGATTGCCAACAAAGTCCAGGGGAGCCATGGCCTGAGCCGGGGAACAGTGTGTCGTCGCATGGGTGTCCAGCCTCGGGAGCCCAAGGGACAGGGCTGGGACTATGGCATTGGT
GGAGGCTGGGACCACATCTCTGTCCGGGCCAATGCCACCAGGGCACCGAGGAACATGTCCAGGGATCAGGAGGCCCATGGCCCAGGTCCTGTTTGCTGCTGAGGCCACTCCTCACCTGGAGGCAAGGA
CGGTTTGAGCCTGAAGGACCAGAACTGAGCCTTTCTTGTGCAGTATGGGAGGGCATCACCCAGGGCCCCACACACAGGGAGTCAGGTCAGAGTCAGCCATTTCTGCAGCACCGGCAAGAATGCCAGAG
GATGAAACTGTGGGGGCGCTGAGTTTGTGAGGGATGCTGTAGGGAAGAGCCAAGATGACAATTCTGTGGGTCCCCTGAGCCCCGGTCTCTGCCTGCAATACCTCCCACCTTTCCAGGCCAGGAACTCA
GAGCCCTCTAGAAATTCTGGTCCTGAGAGGCAGAGGCAGGGGAGGACCTTCCACACCTGGAGACCCCAAATCACCTCCAGGAGAAATAGCTCTGAGGTTCAGGTCTACAGGCCTCAGTCTGGCCATTC
CTCAGCAGGGTTTCCTGAGGGAGTTTTTGCTTCAAAAGAAGCAAAGGGCTCGATGCCTGTAGGCCTGGCACTCAGGAGACTGAGGCAGGCGAATGGTGAGTCTGAGACTACCCAGGACGACATAGCAA
GACAGTCACAAAAATAAATATCTAGATAAGCAAACCAGGCATGAAGGTGCATGTCTGTACTCCAAAGCTGAGGGCAAGGTCAGAAGTTCAAGAGCATCCTCAGACTCCAGAGTAAATTTGGCCAGCCT
GGGCTACATAAGACCCTGCTTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017598316 ⟹ XP_017453805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,505,295 - 15,534,541 (+)	NCBI
mRatBN7.2	12	10,391,633 - 10,420,462 (+)	NCBI
Rnor_6.0	12	12,374,132 - 12,403,382 (+)	NCBI

Sequence:

show sequence

ACCCCCTCCCACCCGCCCCAGGGAAGGAATTCTTGCAACAAAGTGGGAGGAAGACATCAGTATATCCAGTGATATTATCACACATCAGCATTAATATTATGTTCCATCTATCTAGGTCGTAGAGACTG
AGCAATAAATACCCTGACGCCCTGGCACAGTCACAAAAGTCACGTTTCTCTCACTCCTCCCCAAAGGAGAAAAGTCCATCCTCAAGGGCTACTGTCTAGCCCCGAGGGACCCATCGAGTCACGTGTCC
TCACGGGTCCCGGGCCAAGCGCGTCCTTACACGCCGGCAATTCCTCAGGGCACCGCTTCCTGCGTTCCAGCATTCTCTTTCCTCTTCCTCCTCCTCGCGTCTACACCGGCCTGCACTGCTCCCGAAGC
GGAGCCCCGAGAGAGCGGACGCAGCAACCGCACCTTCCTTCCTCAGTCGCAGAGAGCGACCGGCTAGCTGGACCCGGCGCGACCTCGAGAGTGCGCACGCGCGCCGTCTGTCCCCGAGCGGGCGAGAT
CGCCGCTGAGCGCAGCAGTCAATCGTGAGCTCCCAGGCAGTTGCGTCACTCCGAGTCTGGCCAATCAGCGCTGAATCGATTATTGCTTCCGGCCCGCCCTCTCGCCTGAGGCCGGGGGAGGACCCGAC
TGTAGCTAAAGCCTTGGAGTTCAGAAGCCTCGGCTGGGAACCCGCCCCGCCGGGCGTGGGCCCAGCGCTTCGTGGTCAAGCAGAGGTTGCTGCCAGAGGATATGTTCCCTCTGTCCCTTCACTTCCGT
GAAACAAAGATATTCCTGAATCACAAGACCTCCACACATCCACTTCAAGAGTCCTGTGACCCAGTGACCCAAGCGAGGTTTCGTGGTGATCTCACAGGAAGTGGCGTGTGACAAGTCAGGGGACATCC
CGTGGAGGCAGAAAGAAGCTGTGGTTGGCCAAGGCTGTTTAGCCTGTATGGCCTTTACCTCAGTGCTGCGGCCATGCCCACCTCCATGCTGTGGGCAGTGGACCTCTTCGGGAGAGTGTATACACTGT
CAACGGCCGGTCAGTACTGGGAGCTGTGCAAGGATGTCCAGTTGGAGTTCAAGCGGGTCAGTGCGGCCACTCAGTGCTGCTGGGGCATCGCCTGCGACAACCAGGTCTACTTATATGTGTGCTCCAGC
GATGTGCCCATCCGTCACAGAGAGGAGGCCTATGAGAATCAGCGTTGGAACCCCATGGGAGGCTTCTGTGAGAAGCTCCTGCCAAGTGACCGCTGGTCGTGGAGTGACGTGAGTGGGCTCCAGCATCG
GCCGCTGGATGGCGTAGCACTGCCTTCGCCATACTGGGAATGGGAGTCAGACTGGTACGTGGATGAGAATTTTGGAGGGGAGCCCACCGAGAAAGGGGGGTGGACATACGCTATGGACTTCCCTGCTA
CCTACACTAGAGACAAGAAATGGAATTCATGCGTGCGAAGGCGGAAGTGGATCCGGTATAGGAGATACAAATCCCGGGACACCTGGGCCAAGATCCCCTCAAAGGATGACCCCAAGGAACTCCCTGAC
CCCTTCAATGATCTGTCTGTAGGAGGGTGGGAGATCACAGAAGAACCTGTAGGCCGCCTGTCAGTGTGGGCTGTATCCTTGCAGGGGAAGGTGTGGTACCGAGAGAACGTTAGCCACCCCAATCCAGA
AGGTTCCTCCTGGTCTCTTGTGGATACCCCAGGGGAAGTGGTCCAGATCAGCTGTGGGCCCCACGACCTTATATGGGCCACCCTCTGGGAGGGGCAGGCTCTGGTCAGAGAAGGAATCTGCAGGAACA
ACCCCAAAGGAAATTCCTGGTCCATAGTGGAGCCTCCTGGGTCTGAAAATGGCATCATGCACGTCTCTGCGGGAGTCAGTGTGGTCTGGGCCATCACAAAGGACCGCAAAGTGTGGTTCCGGAGGGGC
GTCAACTCTCACAACCCCTGTGGCACCAGCTGGATCGAGATGGTCGGAGAGATGACCATGGTGAACGTGGGGCTGAATGACCAGGTCTGGGGTATCAGCTGTGAGGACCGAGCTGTATACTTCCGGCA
GGGTGTCACTCCCAGCGAGCTCAGTGGGAAGACATGGAAGGCCATCGTCGTGGGCCGAGAAAGTGACCGGTCACACTCTGGCAGCTCGTCCAGTCTCCTCAGTGCTGGCTGCTTCTTCGGCGAGGAGG
TGAGGGGCAGTGGTACGGAATCTGCACCCAGTGACACCGATGCCTCCTCGGAAGTCGAGAGACAGGGCCCCGAACGGTCTCTCCCCAAAGAATCTTTGGATAATTCCAGGAACCTTAAAGGAAGCTCG
TCCAAGGGCCACGAGAGCACCAGGAACACTGAGGACCCCATGGAGAACGCCTGCCTGGCTGAGGGCCAAGCAAAGGCTCCCAAGACCTCTGGCCCTGATGAGTGCCATGGCCCAGCCCCCACGCCAGC
TGAGCTGCCCTGGACCAACATTGACCTAAAGGAGCCTAAGAAGGCGTCTAACCAGCCAGCTGCCGGCTTTCCTGAGACTTCGGGCCTCTCCTCCCTAGGGCTGTTCCCGATGGGCATGGAAGAGCCCT
ATGGGGCAGACGACCATCCTCTGTGGGCCTGGGTGTCTGGAGGTGGATGTGCGGTGGAAGCGGGCTCTGCTCTCAAGTGGTTCACTGTCCAGTCAGGCCTATCCCCCTCAGTGCAGACGTTGTCCCTG
TCCATCACACCCGCCCAGACCGCTGCCTGGAGGAAACAGATCTTCCAGCAGCTCACGGAGAGGACCAAGCGAGAGCTGGAGAGCTTCAGACACTATGAACAGGCCGTAGAGCAGTCGGTGTGGGTGAA
GACGGGGGCCCTGCAGTGGTGGTGCGACTGGAAGCCCCACAAGTGGGTGGACGTCCGTGTGGCCCTGGAGCAGTTCACAGGGCATGACGGGGCTCGAGACAGCATCCTCTTCATCTATTACGTGGTCC
ATGAGGAAAAGAAGTACCTACACGTGTTCCTGAATGAGGTGACCGTGCTGGTCCCCGTGCTTAATGAAGCCAAGCACTCCTTTGCCCTCTACACCCCCGAAAGGACCAGACAGAGGTGGCCCGTACGC
CTGGCTGCCACCACTGAGCAAGACATGAATGACTGGCTTACCCTGCTCAGCCTGTCCTGCTGCGAGAGCCGGAAGGTCCACGGACGCCCGTCCCTGCAGGCCATCTGGTCTGTCACTTGCAAGGGTGA
CATCTTTGTGAGTGAGCCCAGCCCAGACCTGGAAGCCCATGAGCACCTGCTACCCTGCGACCAGATGTTCTGGCGACAGATGGGAGGCCACCTGCGGATCATAGAGGCCAACAGCCGAGGCGTGGTGT
GGGGCATCGGCTATGATCACACAGCATGGGTGTACACAGGCGGCTATGGCGGAGGCTGCTTCCAAGGCCTGGCCAGCAGCACCAGCAACATTTATACACAGTCGGACGTGAAGAGCGTCTACATCTAT
GAGAACCAGCGTTGGAACCCTGTCACGGGCTATACCAGCAGGGGTCTGCCCACTGACCGGTACATGTGGAGTGATGTCACAGGGCTACAAGAATGCACCAAGGCCGGCACAAAGCCCCCATCCCTGCA
GTGGACTTGGGTTTCTGACTGGTATGTGGACTTCAGTGTCCTCGGAGGCACCGATCAGGAAGGATGGCAGTACGCCAGTGATTTCCCTGCCTCTTACCACGGGTACAAAACCATGAAGGATTTTGTCA
GGAGAAGGTGCTGGGCCAGAAAATGCAAGCTGGTGACCAGCGGGCCGTGGCTGGAGGTGGCCCCCATCGCCCTCAGCGATGTGTCCATCATCCCCGAGAGTGCAGATGCTAATGGGAGAGGACACAAT
ATCGCACTGTGGGCCGTCAGTGACAAGGGGGACGTCCTGTGCCGCCTGGGTGTGTCTGAACTCAACCCTGCGGGCTCCTCCTGGCTGCATGTGGGCACTGACCAGCCCTTTGCCTCTGTCTCTATCGG
AGCCTGCTATCAGGTGTGGGCTGTGGCCAGGGATGGCTCTGCATTCTACCGGGGCTCTGTGTCTCCTTCCCAGCCAGCTGGTGACTGCTGGTACCACATCCCATCTCCTCCCAAGCAGAAGCTCACAC
AAGTGTCTGTGGGCCAGACATCAGTTTATGCCTTGGATGAAAACGGGAACCTGTGGTACCGAGCAGGGATCACCCCCAGCTACCCGCAGGGCTCCAGCTGGGAGCACGTGTCCAACAATGTGCGCAAA
GTGTCTGTGGGGCCACTGGACCAGGTCTGGGTGATTGCCAACAAAGTCCAGGGGAGCCATGGCCTGAGCCGGGGAACAGTGTGTCGTCGCATGGGTGTCCAGCCTCGGGAGCCCAAGGGACAGGGCTG
GGACTATGGCATTGGTGGAGGCTGGGACCACATCTCTGTCCGGGCCAATGCCACCAGGGCACCGAGGAACATGTCCAGGGATCAGGAGGCCCATGGCCCAGGTCCTGTTTGCTGCTGAGGCCACTCCT
CACCTGGAGGCAAGGACGGTTTGAGCCTGAAGGACCAGAACTGAGCCTTTCTTGTGCAGTATGGGAGGGCATCACCCAGGGCCCCACACACAGGGAGTCAGGTCAGAGTCAGCCATTTCTGCAGCACC
GGCAAGAATGCCAGAGGATGAAACTGTGGGGGCGCTGAGTTTGTGAGGGATGCTGTAGGGAAGAGCCAAGATGACAATTCTGTGGGTCCCCTGAGCCCCGGTCTCTGCCTGCAATACCTCCCACCTTT
CCAGGCCAGGAACTCAGAGCCCTCTAGAAATTCTGGTCCTGAGAGGCAGAGGCAGGGGAGGACCTTCCACACCTGGAGACCCCAAATCACCTCCAGGAGAAATAGCTCTGAGGTTCAGGTCTACAGGC
CTCAGTCTGGCCATTCCTCAGCAGGGTTTCCTGAGGGAGTTTTTGCTTCAAAAGAAGCAAAGGGCTCGATGCCTGTAGGCCTGGCACTCAGGAGACTGAGGCAGGCGAATGGTGAGTCTGAGACTACC
CAGGACGACATAGCAAGACAGTCACAAAAATAAATATCTAGATAAGCAAACCAGGCATGAAGGTGCATGTCTGTACTCCAAAGCTGAGGGCAAGGTCAGAAGTTCAAGAGCATCCTCAGACTCCAGAG
TAAATTTGGCCAGCCTGGGCTACATAAGACCCTGCTTCAAGAAAAAAAAAAAAACAAGATGGAGAGAGGCTAGCCTGGGCTATATAAAATCCTGCCTCAAAAAACAAGACGGGTATCCTGTTGGTTTG
GGGTTCCCTCCTGTGGTGCACTGGAAAGTAATTTCCTTTTAGGGAATCACGGTTATGAACCCCAGTTTAGCCCCTCTTTTAGATAAGGAGGCAGGGCCTCTATGCACAGGATTGTGTTGCAAGGTGTA
CAGGTCTAGGGGGGAGGCAGCTGGCACCCTGGACTTGAAGGAAGAAATCTGTGCCCTGTGGAGAGGGTCTGGCCTGAACCCCAGGCTTTCTTGTGCTCCCTAGCTGGAGCCCCAAGATGTGAATGCTA
GCCTGCCTGGCGTGGCCTAACTAAGCACGGCCCATGGCAAAAGTGTGCCCCAGCAGGCGACGTCTCATGTTTCAGACACTGCCCATGAGTACAGAGCCAAGCCCGTCTCCACTAACTTTGAGACAGGA
CGGACCCCCCTGACTGGTTTGCCCTGGAATCCTCCCTGTGTGATGTGTTCGGGAGGGGGTATCCCTAGAAGTTAAGAGGAAACTACTCTGGGGTCCCATCCCAAGGACATAGTGGTCCCTCATCCTCC
ACCAGACATACCCATGTGCAGAGAGGCGCCAAGGGGTCTCCCTCATGTCAGTGTTGGGATTCCAAGGGGACATCCGGGTTTGTCCCCAGCAACTGTGACCTGTGTGTTCTGCACATGGTTCTCAGCTG
AGGACCGGCAGTGTCACCAGGGTGATGAATCCTCTCTCTGAGCACCAACTGTTCACCCCCTCAGTGGCACCCAACTCTTTAGGCTCCCCAGATGTTCTATTTAATAAAAATTTATACCACA

hide sequence

RefSeq Acc Id:

XM_039089350 ⟹ XP_038945278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,516,445 - 15,534,541 (+)	NCBI
mRatBN7.2	12	10,402,790 - 10,420,462 (+)	NCBI

RefSeq Acc Id:

XM_039089351 ⟹ XP_038945279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,515,356 - 15,534,541 (+)	NCBI
mRatBN7.2	12	10,401,703 - 10,420,462 (+)	NCBI

RefSeq Acc Id:

XR_005491622

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,504,456 - 15,524,901 (+)	NCBI
mRatBN7.2	12	10,391,587 - 10,411,243 (+)	NCBI


Protein RefSeqs	NP_001032268	(Get FASTA)	NCBI Sequence Viewer
	XP_017453805	(Get FASTA)	NCBI Sequence Viewer
	XP_038945278	(Get FASTA)	NCBI Sequence Viewer
	XP_038945279	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI03479	(Get FASTA)	NCBI Sequence Viewer
	EDL89637	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001347
	ENSRNOP00000001347.5
GenBank Protein	Q3ZBA0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001032268 ⟸ NM_001037191

- UniProtKB:

Q3ZBA0 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPTSMLWAVDLFGRVYTLSTAGQYWELCKDVQLEFKRVSAATQCCWGIACDNQVYLYVCSSDVPIRHREEAYENQRWNPMGGFCEKLLPSDRWSWSDVSGLQHRPLDGVALPSPYWEWESDWYVDENF
GGEPTEKGGWTYAMDFPATYTRDKKWNSCVRRRKWIRYRRYKSRDTWAKIPSKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYRENVSHPNPEGSSWSLVDTPGEVVQISCGPHDLI
WATLWEGQALVREGICRNNPKGNSWSIVEPPGSENGIMHVSAGVSVVWAITKDRKVWFRRGVNSHNPCGTSWIEMVGEMTMVNVGLNDQVWGISCEDRAVYFRQGVTPSELSGKTWKAIVVGRESDRS
HSGSSSSLLSAGCFFGEEVRGSGTESAPSDTDASSEVERQGPERSLPKESLDNSRNLKGSSSKGHESTRNTEDPMENACLAEGQAKAPKTSGPDECHGPAPTPAELPWTNIDLKEPKKASNQPAAGFP
ETSGLSSLGLFPMGMEEPYGADDHPLWAWVSGGGCAVEAGSALKWFTVQSGLSPSVQTLSLSITPAQTAAWRKQIFQQLTERTKRELESFRHYEQAVEQSVWVKTGALQWWCDWKPHKWVDVRVALEQ
FTGHDGARDSILFIYYVVHEEKKYLHVFLNEVTVLVPVLNEAKHSFALYTPERTRQRWPVRLAATTEQDMNDWLTLLSLSCCESRKVHGRPSLQAIWSVTCKGDIFVSEPSPDLEAHEHLLPCDQMFW
RQMGGHLRIIEANSRGVVWGIGYDHTAWVYTGGYGGGCFQGLASSTSNIYTQSDVKSVYIYENQRWNPVTGYTSRGLPTDRYMWSDVTGLQECTKAGTKPPSLQWTWVSDWYVDFSVLGGTDQEGWQY
ASDFPASYHGYKTMKDFVRRRCWARKCKLVTSGPWLEVAPIALSDVSIIPESADANGRGHNIALWAVSDKGDVLCRLGVSELNPAGSSWLHVGTDQPFASVSIGACYQVWAVARDGSAFYRGSVSPSQ
PAGDCWYHIPSPPKQKLTQVSVGQTSVYALDENGNLWYRAGITPSYPQGSSWEHVSNNVRKVSVGPLDQVWVIANKVQGSHGLSRGTVCRRMGVQPREPKGQGWDYGIGGGWDHISVRANATRAPRNM
SRDQEAHGPGPVCC

hide sequence

RefSeq Acc Id:	XP_017453805 ⟸ XM_017598316
- Peptide Label:	isoform X1
- UniProtKB:	Q3ZBA0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPTSMLWAVDLFGRVYTLSTAGQYWELCKDVQLEFKRVSAATQCCWGIACDNQVYLYVCSSDVP IRHREEAYENQRWNPMGGFCEKLLPSDRWSWSDVSGLQHRPLDGVALPSPYWEWESDWYVDENFGGEPTEKGGWTYAMDFPATYTRDKKWNSCVRRRKWIRYRRYKSRDTWAKIPSKDDPKELPDPFN DLSVGGWEITEEPVGRLSVWAVSLQGKVWYRENVSHPNPEGSSWSLVDTPGEVVQISCGPHDLIWATLWEGQALVREGICRNNPKGNSWSIVEPPGSENGIMHVSAGVSVVWAITKDRKVWFRRGVNS HNPCGTSWIEMVGEMTMVNVGLNDQVWGISCEDRAVYFRQGVTPSELSGKTWKAIVVGRESDRSHSGSSSSLLSAGCFFGEEVRGSGTESAPSDTDASSEVERQGPERSLPKESLDNSRNLKGSSSKG HESTRNTEDPMENACLAEGQAKAPKTSGPDECHGPAPTPAELPWTNIDLKEPKKASNQPAAGFPETSGLSSLGLFPMGMEEPYGADDHPLWAWVSGGGCAVEAGSALKWFTVQSGLSPSVQTLSLSIT PAQTAAWRKQIFQQLTERTKRELESFRHYEQAVEQSVWVKTGALQWWCDWKPHKWVDVRVALEQFTGHDGARDSILFIYYVVHEEKKYLHVFLNEVTVLVPVLNEAKHSFALYTPERTRQRWPVRLAA TTEQDMNDWLTLLSLSCCESRKVHGRPSLQAIWSVTCKGDIFVSEPSPDLEAHEHLLPCDQMFWRQMGGHLRIIEANSRGVVWGIGYDHTAWVYTGGYGGGCFQGLASSTSNIYTQSDVKSVYIYENQ RWNPVTGYTSRGLPTDRYMWSDVTGLQECTKAGTKPPSLQWTWVSDWYVDFSVLGGTDQEGWQYASDFPASYHGYKTMKDFVRRRCWARKCKLVTSGPWLEVAPIALSDVSIIPESADANGRGHNIAL WAVSDKGDVLCRLGVSELNPAGSSWLHVGTDQPFASVSIGACYQVWAVARDGSAFYRGSVSPSQPAGDCWYHIPSPPKQKLTQVSVGQTSVYALDENGNLWYRAGITPSYPQGSSWEHVSNNVRKVSV GPLDQVWVIANKVQGSHGLSRGTVCRRMGVQPREPKGQGWDYGIGGGWDHISVRANATRAPRNMSRDQEAHGPGPVCC hide sequence

Ensembl Acc Id:

ENSRNOP00000001347 ⟸ ENSRNOT00000001347

RefSeq Acc Id:	XP_038945279 ⟸ XM_039089351
- Peptide Label:	isoform X3
- UniProtKB:	A6K1H9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945278 ⟸ XM_039089350
- Peptide Label:	isoform X2
- UniProtKB:	A6K1H9 (UniProtKB/TrEMBL)

Protein Domains

Peroxin/Ferlin PH

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3ZBA0-F1-model_v2	AlphaFold	Q3ZBA0	1-1166	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13698426

Promoter ID:

EPDNEW_R8951

Type:

initiation region

Name:

Tecpr1_1

Description:

tectonin beta-propeller repeat containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	12,374,742 - 12,374,802	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-20032	BioCyc
Ensembl Genes	ENSRNOG00000001010	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000001347	ENTREZGENE
	ENSRNOT00000001347.8	UniProtKB/Swiss-Prot
Gene3D-CATH	2.30.29.30	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7937275	IMAGE-MGC_LOAD
InterPro	Beta-propeller_rpt_TECPR	UniProtKB/Swiss-Prot
	Peroxin	UniProtKB/Swiss-Prot
	Peroxin/Ferlin	UniProtKB/Swiss-Prot
	PH-like_dom_sf	UniProtKB/Swiss-Prot
	Tectonin_beta-propeller	UniProtKB/Swiss-Prot
KEGG Report	rno:304285	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124730	IMAGE-MGC_LOAD
NCBI Gene	304285	ENTREZGENE
PANTHER	DYSFERLIN-RELATED	UniProtKB/Swiss-Prot
	TECTONIN BETA-PROPELLER REPEAT-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	Hyd_WA	UniProtKB/Swiss-Prot
	Pex24p	UniProtKB/Swiss-Prot
	Tectonin	UniProtKB/Swiss-Prot
PhenoGen	Tecpr1	PhenoGen
RatGTEx	ENSRNOG00000001010	RatGTEx
SMART	DysFC	UniProtKB/Swiss-Prot
	DysFN	UniProtKB/Swiss-Prot
	TECPR	UniProtKB/Swiss-Prot
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
UniProt	A6K1H9	ENTREZGENE, UniProtKB/TrEMBL
	Q3ZBA0	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-06-12	Tecpr1	tectonin beta-propeller repeat containing 1	RGD1306873	similar to RIKEN cDNA 2210010N04 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306873	similar to RIKEN cDNA 2210010N04 gene	RGD1306873_predicted	similar to RIKEN cDNA 2210010N04 gene (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306873_predicted	similar to RIKEN cDNA 2210010N04 gene (predicted)	LOC304285_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC304285_predicted	similar to RIKEN cDNA 2210010N04 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar