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Gene: Tecpr1 (tectonin beta-propeller repeat containing 1) Ictidomys tridecemlineatus

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Symbol:

Tecpr1

Name:

tectonin beta-propeller repeat containing 1

RGD ID:

12643337

Description:

ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (inferred); INVOLVED IN autophagosome maturation (inferred); autophagy (inferred); macroautophagy (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); Tracheoesophageal Fistula (ortholog); FOUND IN autophagosome membrane (inferred); bounding membrane of organelle (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tectonin beta-propeller repeat containing 1, transcript variant X1; tectonin beta-propeller repeat containing 1, transcript variant X2; tectonin beta-propeller repeat-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	139,163,869 - 139,188,658 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	756,072 - 781,549 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	756,602 - 781,422 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tecpr1	Squirrel	pleomorphic xanthoastrocytoma		ISO	RGD:1601877	8554872	ClinVar Annotator: match by term: Pleomorphic xanthoastrocytoma	ClinVar	PMID:28299358
Tecpr1	Squirrel	Tracheoesophageal Fistula		ISO	RGD:1601877	8554872	ClinVar Annotator: match by term: Tracheoesophageal fistula	ClinVar	PMID:32641753

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tecpr1	Squirrel	autophagosome maturation	involved_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	150520179		Ensembl	GO_REF:0000107
Tecpr1	Squirrel	autophagosome maturation	involved_in	IEA	PANTHER:PTN000583279	150520179		TreeGrafter	GO_REF:0000118
Tecpr1	Squirrel	autophagy	involved_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	150520179		Ensembl	GO_REF:0000107
Tecpr1	Squirrel	macroautophagy	involved_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	150520179		Ensembl	GO_REF:0000107
Tecpr1	Squirrel	regulation of autophagosome maturation	involved_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tecpr1	Squirrel	autophagosome membrane	located_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	150520179		Ensembl	GO_REF:0000107
Tecpr1	Squirrel	autophagosome membrane	located_in	IEA	PANTHER:PTN000583279	150520179		TreeGrafter	GO_REF:0000118
Tecpr1	Squirrel	autophagosome membrane	located_in	IEA	UniProtKB-SubCell:SL-0022	150520179		UniProt	GO_REF:0000044
Tecpr1	Squirrel	bounding membrane of organelle	located_in	IEA	ARBA:ARBA00027281	150520179		UniProt	GO_REF:0000117
Tecpr1	Squirrel	cytoplasm	located_in	IEA	ARBA:ARBA00026971	150520179		UniProt	GO_REF:0000117
Tecpr1	Squirrel	lysosomal membrane	located_in	IEA	UniProtKB-SubCell:SL-0157	150520179		UniProt	GO_REF:0000044
Tecpr1	Squirrel	lysosomal membrane	located_in	IEA	PANTHER:PTN000583279	150520179		TreeGrafter	GO_REF:0000118
Tecpr1	Squirrel	lysosomal membrane	located_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	150520179		Ensembl	GO_REF:0000107
Tecpr1	Squirrel	lysosome	located_in	IEA	UniProtKB-KW:KW-0458	150520179		UniProt	GO_REF:0000043
Tecpr1	Squirrel	membrane	located_in	IEA	InterPro:IPR006614	150520179		InterPro	GO_REF:0000002
Tecpr1	Squirrel	nucleoplasm	located_in	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tecpr1	Squirrel	phosphatidylinositol-3-phosphate binding	enables	IEA	UniProtKB:Q7Z6L1\|ensembl:ENSP00000404923	150520179		Ensembl	GO_REF:0000107
Tecpr1	Squirrel	phosphatidylinositol-3-phosphate binding	enables	IEA	PANTHER:PTN000583279	150520179		TreeGrafter	GO_REF:0000118
Tecpr1	Squirrel	protein binding	enables	ISO	UniProtKB:Q9H1Y0	9068941	PMID:22342342, PMID:32296183, PMID:33961781	IntAct	PMID:22342342\|PMID:32296183\|PMID:33961781
Tecpr1	Squirrel	protein binding	enables	ISO	UniProtKB:Q9H1Y0\|UniProtKB:Q9NT62	9068941	PMID:20562859	IntAct	PMID:20562859
Tecpr1	Squirrel	protein binding	enables	ISO	UniProtKB:Q9H1Y0\|UniProtKB:Q9Y4P8	9068941	PMID:21575909	UniProt	PMID:21575909

PMID:22301074

Tecpr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	139,163,869 - 139,188,658 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	756,072 - 781,549 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	756,602 - 781,422 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TECPR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	98,214,624 - 98,252,232 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	98,214,624 - 98,252,232 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	97,843,936 - 97,881,544 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	97,683,972 - 97,719,404 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	92,539,935 - 92,575,367 (-)	NCBI		Celera
Cytogenetic Map	7	q21.3	NCBI
HuRef	7	92,445,624 - 92,482,323 (-)	NCBI		HuRef
CHM1_1	7	97,774,799 - 97,811,769 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	99,444,762 - 99,482,933 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	97,169,633 - 97,206,440 (-)	NCBI

Tecpr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	144,131,260 - 144,160,433 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	144,131,260 - 144,160,433 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	144,194,442 - 144,223,615 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	144,194,442 - 144,223,615 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	144,956,191 - 144,984,447 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	144,447,967 - 144,477,142 (-)	NCBI		MGSCv36	mm8
Celera	5	141,179,701 - 141,207,966 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	83.07	NCBI

Tecpr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	15,504,456 - 15,534,541 (+)	NCBI		GRCr8
mRatBN7.2	12	10,391,587 - 10,420,462 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	10,391,696 - 10,419,611 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	11,198,869 - 11,226,872 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	11,822,165 - 11,850,168 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	10,845,551 - 10,873,599 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	12,374,132 - 12,403,382 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	12,374,790 - 12,402,552 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	14,426,445 - 14,454,202 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	10,719,095 - 10,747,027 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	10,736,154 - 10,776,251 (+)	NCBI
Celera	12	12,190,848 - 12,218,752 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

Tecpr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	14,106,711 - 14,138,033 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	14,106,711 - 14,137,983 (-)	NCBI	ChiLan1.0	ChiLan1.0

TECPR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	116,061,930 - 116,098,903 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	164,326,564 - 164,363,553 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	6,269,935 - 6,306,941 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	103,680,161 - 103,716,572 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	103,680,156 - 103,716,572 (-)	Ensembl	panpan1.1		panPan2

TECPR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	11,086,498 - 11,112,236 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	11,086,423 - 11,112,241 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	12,712,441 - 12,738,602 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	11,086,505 - 11,112,680 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	11,086,464 - 11,112,670 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	10,955,215 - 10,981,372 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	10,935,026 - 10,961,189 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	11,169,072 - 11,195,233 (+)	NCBI		UU_Cfam_GSD_1.0

TECPR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	5,414,074 - 5,442,943 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	5,414,071 - 5,442,953 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	5,473,363 - 5,500,906 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TECPR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	14,912,281 - 14,953,427 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	14,912,529 - 14,956,059 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	1,123,889 - 1,163,984 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tecpr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	31,676,044 - 31,704,820 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	31,676,044 - 31,704,828 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005339723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021719707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000009756 ⟹ ENSSTOP00000008750

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936750	756,072 - 781,549 (-)	Ensembl

RefSeq Acc Id:

XM_005339723 ⟹ XP_005339780

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	139,163,869 - 139,188,658 (+)	NCBI
SpeTri2.0	NW_004936750	756,602 - 781,422 (-)	NCBI

Sequence:

show sequence

ACTCTCTCTTTTGCCACTGGTTTTCCTCCAGCCGCCGACACCATGCCCACCTCAGTGCTGTGGGCGGTGGACCTCTTTGGGAGAGTATACACTCTGTCCACGGCTGGCCAGTACTGGGAACTGTGCAA
GGATGCCCAGCTGGAGTTCAAGCGGGTCAGCGCGGCCATGCAGTGTTGCTGGGGCATTGCCTGCGACAACCAGGTCTACTTGTACATGTGCGCCAACGATGTCCCCATCCGCCGCCGAGAGGAGGCCT
ATGAGAATCAGCGTTGGAATCCCATGGGTGGCTTCTGTGAGAAGCTCCTGCCGAGTGACCGCTGGCAGTGGAGTGACGTGAGTGGGCTCCAACACCGGCTGCTGGATGGGGTGGCGCTACCCTCGCCA
CACTGGGAGTGGGAGTCAGACTGGTACGTGGATGAGAATTTTGGAGGGGAACCCACCGAAAAAGGGGGGTGGACGTATGCCATTGACTTTCCCGCCACCTACACGAGAGACAAGAAGTGGAATTCGTG
CGTGCGGCGACGGAAGTGGATCCGGTACAGGAGATACAAGTCCCGGGACACCTGGGCCAAGATCCCCTCAAAGGATGACCCCAAGGAACTCCCTGACCCCTTTAATGACCTCTCTGTCGGCGGGTGGG
AGATTACAGAGGAGCCCGTGGGCCGCCTGTCAGTCTGGGCTGTGTCTCTGCAGGGAAAGGTGTGGTATCGAGAGGATGTCAGCCACTCCAACCCGGAAGGCTCCTGGTGGTCCCTGGTGGACACCCCA
GGGGAGGTGGTCCAGATCAGCTGTGGGCCCCATGACCTTCTGTGGGCCACCCTCTGGGAGGGGCAGGCCCTGGTCCGGGAAGGAATCAACAGGAACAACCCCAAAGGAAGTTTCTGGTCCATAGTGGA
GCCTCCTGGGTCTGAAAATGGGATCATGCACATCTCCGTGGGCGTCGGTGTGGTCTGGGCTGTCACTAAAGACCGGAAAGTATGGTTCCGAAGGGGTGTCAACTCTCACAATCCCTGTGGCACCAGCT
GGATCGAGATGGTTGGCGAGATGGTCATGGTGAACGTGGGGCTCAATGACCAGGTCTGGGGTATCAGCTGTGAGGACCGAGCTGTGTACTTCCGGCAGGGCGTCACCCCCAGTGAGCTCAGTGGGAAG
ACATGGAAGGCTATTGTTGCCACCCGAGAGTGTGACCGGTCCCACTCTGGCAGCTCGTCAAGCCTCCTCAGTGCTGGCTGCTTCTTTGGTGATGAAGTGAGGGCCAGTAGTGACTCTGCATCCCACGA
CACTGACGTTTCTTCAGAAGTCGAGAGACGGGACCCCGAGCAGCCTCTCCCTAAGGAGTCTTTGGACAATCCCCAGAACCCCAATGAGAGCTCAGCCTTGGACCCTGGGGCCAGCAGGACTGCAGAGT
GTGATGTGGAGAATGCCTGCCCAGTGGTGGGCAGAGGGGAGCCCACTCAGGCCCCTGGTCCCAGTGGGCGTCCAGCTGAGCTGCCCTGGACTAACATTGACCTGAAGGAGCCCAAGAAGGCGCCTAAC
CACTCAGCTGCTGGCCTCCCTGAATCCACGGGCCTCGCCTCCCTGGGGCTCTTTACCCTGGGCTTGGAGGAGCCCTATGGGGCCGATGACCACCTGCTGTGGGCCTGGGTGTCAGGAGGTGGCTGCGC
AGTGGAGGCAGGCTCCGTGCTCAAGTGGTTCACTGTCCAGTCTGGCCTGTCTCCCTCAGTGCAGACGCTGTCCCTGTCCATCACGCCAGCACAAACCGCCGCCTGGAGGAAGCAGATCTTCCAGCAGC
TCACAGAAAGGACCAAGCGGGAGCTGGAGAACTTCCGGCATTACGAGCAGGCCGTGGAGCAGTCAGTATGGGTGAAGACTGGGGCCCTGCAGTGGTGGTGTGACTGGAAGCCCCACAAGTGGGTGGAC
GTCCGCGTGGCCCTGGAGCAGTTCACGGGGCATGACGGGGCTCGAGACAGCATCCTCTTCATCTACTACGTGGTCCATGAGGAGAAGAAGTACCTTCATGTGTTCCTCAATGAGGTGACAGTGCTGGT
CCCAGTGCTCAATGAGGCCAAGCACTCCTTTGCCCTATATACTCCTGAGAGGACACGGCAGAGGTGGCCCGTGCGCCTGGCTGCTGCCACCGAGCAGGACATGAATGACTGGCTTGCCCTGCTCAGCC
TGTCCTGCTGTGAGAGCCGGAGGGTCCAAGGCCGCCCGTCCCCACAGGCCATCTGGTCCATTACCTGCAAGGGAGACATCTTTGTGAGTGAGCCCAGCCCAGACCTGGAGGCCCATGAGCACCTGCTG
CCTTGTGACCAGATGTTCTGGAGGCAGATGGGAGGCCACTTGCGGGTGGTAGAGGCCAACAGCCGCGGCGTGGTGTGGGGCATCGGCTACGACCACACAGCCTGGGTGTACACAGGTGGCTACGGTGG
AGGCTGCTTCCAAGGCCTGGCCAGCAGCACCAGCAACATCTATACACAGTCGGACGTGAAGAGCGTCTACATCTACGAGAACCAGCGCTGGAATCCCGTCACGGGCTACACCAGCAGGGGTCTGCCCA
CTGACCGGTATATGTGGAGTGATGCTACAGGGCTACAGGAATGCACCAAGGCTGGCACAAAGCCCCCGTCCCTGCAGTGGACCTGGGTTTCCGACTGGTATGTGGACTTCAGCATAACGGGAGGCACT
GACCAGGAGGGGTGGCAGTACGCCAGTGACTTCCCTGCCTCATACCATGGGTACAAAACCATGAAGGATTTTGTCAGGAGAAGGTGTTGGGCCAGAAAATGCAAGCTGGTGACCAGTGGGCCTTGGCT
GGAGGTGGCTCCCATTGCCCTTGGGGACGTGTCTATCATCCCAGAGAGCCCAGAGGCTGAGGGGCACACGCACAGCATTGCCCTGTGGGCCGTCAGTGACAAGGGGGATGTGCTGTGCCGCCTGGGCG
TGTCCGAGCTCAACCCTGCGGGCTCCTCCTGGCTGCACGTTGGCACAGACCAGCCCTTCGCCTCCGTTTCCATTGGGGCCTGCTACCAGGTGTGGGCTGTGGCCAGGGATGGCTCTGCATTCTACAGG
GGCTCTGTGTCCCCCTCCCAGCCAGCTGGTGACTGCTGGTACCACATCCCCCCTCCCCCCAAACAGAGACTATCACAGGTGTCTGTTGGGCAGACGTCTGTATACGCCCTGGATGAAAATGGGAACCT
GTGGTTCCGAGGAGGGATCACACCCAGCTACCCGCAGGGCTCCAGCTGGGATCATGTGTCCAACAACGTGCGCAGAGTGTCCGTGGGGCCCCTGGACCAGGTCTGGGTCATCGCCAACAAAGTCCAGG
GCAGCCATGGGCTGAGCCGGGGGACAGTGTGTCACCGCACGGGCGTGCAGCCCCGAGAGCCCAAGGGGCAGGGCTGGGACTACGGCATTGGGGGAGGCTGGGACCACATATCTGTCCGGGCCAATGCC
ACCAAGGCCGTCCGGAGCGTGTCCCAGGAGCAGGAGGCCCACGGCCCTGTCTGCTGCTGAGGCTGCCCAGTCACCTGGAGGCTGGGATGGTGACAGGCTTGAGGATCAGGCTTGAGCCCTTCTGTGCT
GAAGAGTGCCCCGAGAGAAGACATCGTCAGGAAGACTCAGGAGGGCACCTGGCGGGTTGTGGCCCCTTCAGAGGCGCAGGCTGAAGTGCCAGGGTGTAAAGCCCACACGTGTCCCCTGTCTGCCAGGA
GAGCTGTGGCGCAGGGAGGGACCCTGGGCCCCCGCCTGTCCCATCTGCTCCTTGCCCTGCAGTGTCCACCTGCCCAGGCCCTGAGCCTGGAGCTCGGAGCTTGCCAGGAACTCTGGCCCCGGGAGCAG
AGCCAGGGAGGAACCCTTCTGAGCCAGGTGCCCCAGATGGCATCTGGGCCCTGCCCTGCCCCAAGAGAAATGGCTGCGGGGCTCTGGACCCCCTGCCACAGGCTGTGGTCATTCCTCAGAGCAGGGTT
TAGAAGCAGATCTAGTTTGGAAAGTTAAACAGAGGTGGTGAGCTGGAGATGAATGCTCAAGTGGAGGGCCTTCCCCAGGTGAGCTGGGCCTGCTGGGTGCATGGAGATGTGCCCAAGTGCGGTCACCT
CAAGAACCTTCCATGGTGGGGGAGGCTCCTCATATGGAGGATCTGGGATCCTGTTGCAAGGTGGCAAGGTAGAGGGGAGCAGTCCTGGGCCCCCCAACATTGTGGGAAGCAAGACTGTGCTGTGGGCA
GGGTATGGACAGAATCCCCCCAGCTGTCCTGCCCCCAGGGCAGGGAGAAGGCGCCTTCCGCCCTGATGTGAGAGCCCTGCTGTGCCGGGCCAGGAGGAAGTGCTTAGCCAGTGGCCCTTGCCCTGGGT
AGCCTCTGTGCTGCCAGCTGCCCTGTGCCCCTTAGGCGATGTCTCCAGTCACTTCCTACAGCTGGACACTGTGCGTGGGAGGTGACCAGAGCCATGTCCTGTCCACGCTCCTTCTGAGGTGGCTTGAG
TAGCCGGGCTCCTGACTGGCTCCCCGTCTGTCTGTCTGTGGTCAAGAGGGGTCGGCTCTGCAGTCACCTGAGATTCCAGTTTGCTGTGGAGGGTTTGTCACCAGAAGCCGACCTCAGGCATGGTCTTC
TTGGGGGGTCCCTTCCCACATGCACTCGAGGACCTAGTGTTCACAGTTTCTGGAGGTGGGACCTGGCGAGCCTGAGTATGGTGCCCAGGGGAACTATGGAGTGGCCCTGGACTGACCCTCTGCTTGTC
TCCATGTTAGGCCTGAGTTAGGCATCGTGGTTTGTTCCCCCCAATGTGACCTGTATGTTTCTGCTGTGACTTGCTGTCTGTAGGTGGCTCTCAGCGAGGCACTGGGTGTCACTTTGCCCCCTCTCCAG
AGTGACATGGCCTCTTGCTGCTCAGCACCAATGGTTCACCTGCTCAGCATCACTGTCTTGATCCCTGGGATGCTTTATTCAGTAAAAACTCGCACCCACTGTCAA

hide sequence

RefSeq Acc Id:

XM_021719707 ⟹ XP_021575382

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	139,163,967 - 139,188,658 (+)	NCBI
SpeTri2.0	NW_004936750	756,602 - 781,195 (-)	NCBI

Sequence:

show sequence

TGTCCCCATCCGCCGCCGAGAGGAGGCCTATGAGAATCAGGCTCCGGCCTAAGGCCATCTCTGTGTCTCTGGCCTCAGCGTTGGAATCCCATGGGTGGCTTCTGTGAGAAGCTCCTGCCGAGTGACCG
CTGGCAGTGGAGTGACGTGAGTGGGCTCCAACACCGGCTGCTGGATGGGGTGGCGCTACCCTCGCCACACTGGGAGTGGGAGTCAGACTGGTACGTGGATGAGAATTTTGGAGGGGAACCCACCGAAA
AAGGGGGGTGGACGTATGCCATTGACTTTCCCGCCACCTACACGAGAGACAAGAAGTGGAATTCGTGCGTGCGGCGACGGAAGTGGATCCGGTACAGGAGATACAAGTCCCGGGACACCTGGGCCAAG
ATCCCCTCAAAGGATGACCCCAAGGAACTCCCTGACCCCTTTAATGACCTCTCTGTCGGCGGGTGGGAGATTACAGAGGAGCCCGTGGGCCGCCTGTCAGTCTGGGCTGTGTCTCTGCAGGGAAAGGT
GTGGTATCGAGAGGATGTCAGCCACTCCAACCCGGAAGGCTCCTGGTGGTCCCTGGTGGACACCCCAGGGGAGGTGGTCCAGATCAGCTGTGGGCCCCATGACCTTCTGTGGGCCACCCTCTGGGAGG
GGCAGGCCCTGGTCCGGGAAGGAATCAACAGGAACAACCCCAAAGGAAGTTTCTGGTCCATAGTGGAGCCTCCTGGGTCTGAAAATGGGATCATGCACATCTCCGTGGGCGTCGGTGTGGTCTGGGCT
GTCACTAAAGACCGGAAAGTATGGTTCCGAAGGGGTGTCAACTCTCACAATCCCTGTGGCACCAGCTGGATCGAGATGGTTGGCGAGATGGTCATGGTGAACGTGGGGCTCAATGACCAGGTCTGGGG
TATCAGCTGTGAGGACCGAGCTGTGTACTTCCGGCAGGGCGTCACCCCCAGTGAGCTCAGTGGGAAGACATGGAAGGCTATTGTTGCCACCCGAGAGTGTGACCGGTCCCACTCTGGCAGCTCGTCAA
GCCTCCTCAGTGCTGGCTGCTTCTTTGGTGATGAAGTGAGGGCCAGTAGTGACTCTGCATCCCACGACACTGACGTTTCTTCAGAAGTCGAGAGACGGGACCCCGAGCAGCCTCTCCCTAAGGAGTCT
TTGGACAATCCCCAGAACCCCAATGAGAGCTCAGCCTTGGACCCTGGGGCCAGCAGGACTGCAGAGTGTGATGTGGAGAATGCCTGCCCAGTGGTGGGCAGAGGGGAGCCCACTCAGGCCCCTGGTCC
CAGTGGGCGTCCAGCTGAGCTGCCCTGGACTAACATTGACCTGAAGGAGCCCAAGAAGGCGCCTAACCACTCAGCTGCTGGCCTCCCTGAATCCACGGGCCTCGCCTCCCTGGGGCTCTTTACCCTGG
GCTTGGAGGAGCCCTATGGGGCCGATGACCACCTGCTGTGGGCCTGGGTGTCAGGAGGTGGCTGCGCAGTGGAGGCAGGCTCCGTGCTCAAGTGGTTCACTGTCCAGTCTGGCCTGTCTCCCTCAGTG
CAGACGCTGTCCCTGTCCATCACGCCAGCACAAACCGCCGCCTGGAGGAAGCAGATCTTCCAGCAGCTCACAGAAAGGACCAAGCGGGAGCTGGAGAACTTCCGGCATTACGAGCAGGCCGTGGAGCA
GTCAGTATGGGTGAAGACTGGGGCCCTGCAGTGGTGGTGTGACTGGAAGCCCCACAAGTGGGTGGACGTCCGCGTGGCCCTGGAGCAGTTCACGGGGCATGACGGGGCTCGAGACAGCATCCTCTTCA
TCTACTACGTGGTCCATGAGGAGAAGAAGTACCTTCATGTGTTCCTCAATGAGGTGACAGTGCTGGTCCCAGTGCTCAATGAGGCCAAGCACTCCTTTGCCCTATATACTCCTGAGAGGACACGGCAG
AGGTGGCCCGTGCGCCTGGCTGCTGCCACCGAGCAGGACATGAATGACTGGCTTGCCCTGCTCAGCCTGTCCTGCTGTGAGAGCCGGAGGGTCCAAGGCCGCCCGTCCCCACAGGCCATCTGGTCCAT
TACCTGCAAGGGAGACATCTTTGTGAGTGAGCCCAGCCCAGACCTGGAGGCCCATGAGCACCTGCTGCCTTGTGACCAGATGTTCTGGAGGCAGATGGGAGGCCACTTGCGGGTGGTAGAGGCCAACA
GCCGCGGCGTGGTGTGGGGCATCGGCTACGACCACACAGCCTGGGTGTACACAGGTGGCTACGGTGGAGGCTGCTTCCAAGGCCTGGCCAGCAGCACCAGCAACATCTATACACAGTCGGACGTGAAG
AGCGTCTACATCTACGAGAACCAGCGCTGGAATCCCGTCACGGGCTACACCAGCAGGGGTCTGCCCACTGACCGGTATATGTGGAGTGATGCTACAGGGCTACAGGAATGCACCAAGGCTGGCACAAA
GCCCCCGTCCCTGCAGTGGACCTGGGTTTCCGACTGGTATGTGGACTTCAGCATAACGGGAGGCACTGACCAGGAGGGGTGGCAGTACGCCAGTGACTTCCCTGCCTCATACCATGGGTACAAAACCA
TGAAGGATTTTGTCAGGAGAAGGTGTTGGGCCAGAAAATGCAAGCTGGTGACCAGTGGGCCTTGGCTGGAGGTGGCTCCCATTGCCCTTGGGGACGTGTCTATCATCCCAGAGAGCCCAGAGGCTGAG
GGGCACACGCACAGCATTGCCCTGTGGGCCGTCAGTGACAAGGGGGATGTGCTGTGCCGCCTGGGCGTGTCCGAGCTCAACCCTGCGGGCTCCTCCTGGCTGCACGTTGGCACAGACCAGCCCTTCGC
CTCCGTTTCCATTGGGGCCTGCTACCAGGTGTGGGCTGTGGCCAGGGATGGCTCTGCATTCTACAGGGGCTCTGTGTCCCCCTCCCAGCCAGCTGGTGACTGCTGGTACCACATCCCCCCTCCCCCCA
AACAGAGACTATCACAGGTGTCTGTTGGGCAGACGTCTGTATACGCCCTGGATGAAAATGGGAACCTGTGGTTCCGAGGAGGGATCACACCCAGCTACCCGCAGGGCTCCAGCTGGGATCATGTGTCC
AACAACGTGCGCAGAGTGTCCGTGGGGCCCCTGGACCAGGTCTGGGTCATCGCCAACAAAGTCCAGGGCAGCCATGGGCTGAGCCGGGGGACAGTGTGTCACCGCACGGGCGTGCAGCCCCGAGAGCC
CAAGGGGCAGGGCTGGGACTACGGCATTGGGGGAGGCTGGGACCACATATCTGTCCGGGCCAATGCCACCAAGGCCGTCCGGAGCGTGTCCCAGGAGCAGGAGGCCCACGGCCCTGTCTGCTGCTGAG
GCTGCCCAGTCACCTGGAGGCTGGGATGGTGACAGGCTTGAGGATCAGGCTTGAGCCCTTCTGTGCTGAAGAGTGCCCCGAGAGAAGACATCGTCAGGAAGACTCAGGAGGGCACCTGGCGGGTTGTG
GCCCCTTCAGAGGCGCAGGCTGAAGTGCCAGGGTGTAAAGCCCACACGTGTCCCCTGTCTGCCAGGAGAGCTGTGGCGCAGGGAGGGACCCTGGGCCCCCGCCTGTCCCATCTGCTCCTTGCCCTGCA
GTGTCCACCTGCCCAGGCCCTGAGCCTGGAGCTCGGAGCTTGCCAGGAACTCTGGCCCCGGGAGCAGAGCCAGGGAGGAACCCTTCTGAGCCAGGTGCCCCAGATGGCATCTGGGCCCTGCCCTGCCC
CAAGAGAAATGGCTGCGGGGCTCTGGACCCCCTGCCACAGGCTGTGGTCATTCCTCAGAGCAGGGTTTAGAAGCAGATCTAGTTTGGAAAGTTAAACAGAGGTGGTGAGCTGGAGATGAATGCTCAAG
TGGAGGGCCTTCCCCAGGTGAGCTGGGCCTGCTGGGTGCATGGAGATGTGCCCAAGTGCGGTCACCTCAAGAACCTTCCATGGTGGGGGAGGCTCCTCATATGGAGGATCTGGGATCCTGTTGCAAGG
TGGCAAGGTAGAGGGGAGCAGTCCTGGGCCCCCCAACATTGTGGGAAGCAAGACTGTGCTGTGGGCAGGGTATGGACAGAATCCCCCCAGCTGTCCTGCCCCCAGGGCAGGGAGAAGGCGCCTTCCGC
CCTGATGTGAGAGCCCTGCTGTGCCGGGCCAGGAGGAAGTGCTTAGCCAGTGGCCCTTGCCCTGGGTAGCCTCTGTGCTGCCAGCTGCCCTGTGCCCCTTAGGCGATGTCTCCAGTCACTTCCTACAG
CTGGACACTGTGCGTGGGAGGTGACCAGAGCCATGTCCTGTCCACGCTCCTTCTGAGGTGGCTTGAGTAGCCGGGCTCCTGACTGGCTCCCCGTCTGTCTGTCTGTGGTCAAGAGGGGTCGGCTCTGC
AGTCACCTGAGATTCCAGTTTGCTGTGGAGGGTTTGTCACCAGAAGCCGACCTCAGGCATGGTCTTCTTGGGGGGTCCCTTCCCACATGCACTCGAGGACCTAGTGTTCACAGTTTCTGGAGGTGGGA
CCTGGCGAGCCTGAGTATGGTGCCCAGGGGAACTATGGAGTGGCCCTGGACTGACCCTCTGCTTGTCTCCATGTTAGGCCTGAGTTAGGCATCGTGGTTTGTTCCCCCCAATGTGACCTGTATGTTTC
TGCTGTGACTTGCTGTCTGTAGGTGGCTCTCAGCGAGGCACTGGGTGTCACTTTGCCCCCTCTCCAGAGTGACATGGCCTCTTGCTGCTCAGCACCAATGGTTCACCTGCTCAGCATCACTGTCTTGA
TCCCTGGGATGCTTTATTCAGTAAAAACTCGCACCCACTGTCAA

hide sequence


Protein RefSeqs	XP_005339780	(Get FASTA)	NCBI Sequence Viewer
	XP_021575382	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000008750.3
GenBank Protein	KAG3260036	(Get FASTA)	NCBI Sequence Viewer
	KAG3260037	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005339780 ⟸ XM_005339723
- Peptide Label:	isoform X1
- UniProtKB:	I3ME57 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPTSVLWAVDLFGRVYTLSTAGQYWELCKDAQLEFKRVSAAMQCCWGIACDNQVYLYMCANDVPIRRREEAYENQRWNPMGGFCEKLLPSDRWQWSDVSGLQHRLLDGVALPSPHWEWESDWYVDENF GGEPTEKGGWTYAIDFPATYTRDKKWNSCVRRRKWIRYRRYKSRDTWAKIPSKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSWWSLVDTPGEVVQISCGPHDLL WATLWEGQALVREGINRNNPKGSFWSIVEPPGSENGIMHISVGVGVVWAVTKDRKVWFRRGVNSHNPCGTSWIEMVGEMVMVNVGLNDQVWGISCEDRAVYFRQGVTPSELSGKTWKAIVATRECDRS HSGSSSSLLSAGCFFGDEVRASSDSASHDTDVSSEVERRDPEQPLPKESLDNPQNPNESSALDPGASRTAECDVENACPVVGRGEPTQAPGPSGRPAELPWTNIDLKEPKKAPNHSAAGLPESTGLAS LGLFTLGLEEPYGADDHLLWAWVSGGGCAVEAGSVLKWFTVQSGLSPSVQTLSLSITPAQTAAWRKQIFQQLTERTKRELENFRHYEQAVEQSVWVKTGALQWWCDWKPHKWVDVRVALEQFTGHDGA RDSILFIYYVVHEEKKYLHVFLNEVTVLVPVLNEAKHSFALYTPERTRQRWPVRLAAATEQDMNDWLALLSLSCCESRRVQGRPSPQAIWSITCKGDIFVSEPSPDLEAHEHLLPCDQMFWRQMGGHL RVVEANSRGVVWGIGYDHTAWVYTGGYGGGCFQGLASSTSNIYTQSDVKSVYIYENQRWNPVTGYTSRGLPTDRYMWSDATGLQECTKAGTKPPSLQWTWVSDWYVDFSITGGTDQEGWQYASDFPAS YHGYKTMKDFVRRRCWARKCKLVTSGPWLEVAPIALGDVSIIPESPEAEGHTHSIALWAVSDKGDVLCRLGVSELNPAGSSWLHVGTDQPFASVSIGACYQVWAVARDGSAFYRGSVSPSQPAGDCWY HIPPPPKQRLSQVSVGQTSVYALDENGNLWFRGGITPSYPQGSSWDHVSNNVRRVSVGPLDQVWVIANKVQGSHGLSRGTVCHRTGVQPREPKGQGWDYGIGGGWDHISVRANATKAVRSVSQEQEAH GPVCC hide sequence

RefSeq Acc Id:

XP_021575382 ⟸ XM_021719707

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGGFCEKLLPSDRWQWSDVSGLQHRLLDGVALPSPHWEWESDWYVDENFGGEPTEKGGWTYAID
FPATYTRDKKWNSCVRRRKWIRYRRYKSRDTWAKIPSKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSWWSLVDTPGEVVQISCGPHDLLWATLWEGQALVREGI
NRNNPKGSFWSIVEPPGSENGIMHISVGVGVVWAVTKDRKVWFRRGVNSHNPCGTSWIEMVGEMVMVNVGLNDQVWGISCEDRAVYFRQGVTPSELSGKTWKAIVATRECDRSHSGSSSSLLSAGCFF
GDEVRASSDSASHDTDVSSEVERRDPEQPLPKESLDNPQNPNESSALDPGASRTAECDVENACPVVGRGEPTQAPGPSGRPAELPWTNIDLKEPKKAPNHSAAGLPESTGLASLGLFTLGLEEPYGAD
DHLLWAWVSGGGCAVEAGSVLKWFTVQSGLSPSVQTLSLSITPAQTAAWRKQIFQQLTERTKRELENFRHYEQAVEQSVWVKTGALQWWCDWKPHKWVDVRVALEQFTGHDGARDSILFIYYVVHEEK
KYLHVFLNEVTVLVPVLNEAKHSFALYTPERTRQRWPVRLAAATEQDMNDWLALLSLSCCESRRVQGRPSPQAIWSITCKGDIFVSEPSPDLEAHEHLLPCDQMFWRQMGGHLRVVEANSRGVVWGIG
YDHTAWVYTGGYGGGCFQGLASSTSNIYTQSDVKSVYIYENQRWNPVTGYTSRGLPTDRYMWSDATGLQECTKAGTKPPSLQWTWVSDWYVDFSITGGTDQEGWQYASDFPASYHGYKTMKDFVRRRC
WARKCKLVTSGPWLEVAPIALGDVSIIPESPEAEGHTHSIALWAVSDKGDVLCRLGVSELNPAGSSWLHVGTDQPFASVSIGACYQVWAVARDGSAFYRGSVSPSQPAGDCWYHIPPPPKQRLSQVSV
GQTSVYALDENGNLWFRGGITPSYPQGSSWDHVSNNVRRVSVGPLDQVWVIANKVQGSHGLSRGTVCHRTGVQPREPKGQGWDYGIGGGWDHISVRANATKAVRSVSQEQEAHGPVCC

hide sequence

Ensembl Acc Id:

ENSSTOP00000008750 ⟸ ENSSTOT00000009756

Protein Domains

Peroxin/Ferlin

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000009733	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000009756.3	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
InterPro	Beta-propeller_rpt_TECPR	UniProtKB/TrEMBL
	Peroxin	UniProtKB/TrEMBL
	Peroxin/Ferlin	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	Tectonin_beta-propeller	UniProtKB/TrEMBL
NCBI Gene	Tecpr1	ENTREZGENE
PANTHER	DYSFERLIN-RELATED	UniProtKB/TrEMBL
	TECTONIN BETA-PROPELLER REPEAT-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	Hyd_WA	UniProtKB/TrEMBL
	Pex24p	UniProtKB/TrEMBL
	Tectonin	UniProtKB/TrEMBL
SMART	DysFC	UniProtKB/TrEMBL
	DysFN	UniProtKB/TrEMBL
	TECPR	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
UniProt	I3ME57	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar