TECPR1 (tectonin beta-propeller repeat containing 1) - Rat Genome Database

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Gene: TECPR1 (tectonin beta-propeller repeat containing 1) Chlorocebus sabaeus
Analyze
Symbol: TECPR1
Name: tectonin beta-propeller repeat containing 1
RGD ID: 18513027
Description: ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (inferred); INVOLVED IN autophagosome maturation (inferred); autophagy (inferred); macroautophagy (inferred); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); Tracheoesophageal Fistula (ortholog); FOUND IN autophagosome membrane (inferred); cytoplasm (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tectonin beta-propeller repeat-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12814,912,281 - 14,953,427 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2814,912,529 - 14,956,059 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660701,123,889 - 1,163,984 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TECPR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12814,912,281 - 14,953,427 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2814,912,529 - 14,956,059 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660701,123,889 - 1,163,984 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TECPR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38798,214,624 - 98,252,232 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl798,214,624 - 98,252,232 (-)EnsemblGRCh38hg38GRCh38
GRCh37797,843,936 - 97,881,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36797,683,972 - 97,719,404 (-)NCBINCBI36Build 36hg18NCBI36
Celera792,539,935 - 92,575,367 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef792,445,624 - 92,482,323 (-)NCBIHuRef
CHM1_1797,774,799 - 97,811,769 (-)NCBICHM1_1
T2T-CHM13v2.0799,444,762 - 99,482,933 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2797,169,633 - 97,206,440 (-)NCBI
Tecpr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395144,131,260 - 144,160,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5144,131,260 - 144,160,433 (-)EnsemblGRCm39 Ensembl
GRCm385144,194,442 - 144,223,615 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5144,194,442 - 144,223,615 (-)EnsemblGRCm38mm10GRCm38
MGSCv375144,956,191 - 144,984,447 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365144,447,967 - 144,477,142 (-)NCBIMGSCv36mm8
Celera5141,179,701 - 141,207,966 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map583.07NCBI
Tecpr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,504,456 - 15,534,541 (+)NCBIGRCr8
mRatBN7.21210,391,587 - 10,420,462 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,391,696 - 10,419,611 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,198,869 - 11,226,872 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,822,165 - 11,850,168 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,845,551 - 10,873,599 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,374,132 - 12,403,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,374,790 - 12,402,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01214,426,445 - 14,454,202 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,719,095 - 10,747,027 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,736,154 - 10,776,251 (+)NCBI
Celera1212,190,848 - 12,218,752 (+)NCBICelera
Cytogenetic Map12p11NCBI
Tecpr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546014,106,711 - 14,138,033 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546014,106,711 - 14,137,983 (-)NCBIChiLan1.0ChiLan1.0
TECPR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26116,061,930 - 116,098,903 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17164,326,564 - 164,363,553 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,269,935 - 6,306,941 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17103,680,161 - 103,716,572 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7103,680,156 - 103,716,572 (-)Ensemblpanpan1.1panPan2
TECPR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,086,498 - 11,112,236 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,086,423 - 11,112,241 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha612,712,441 - 12,738,602 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,086,505 - 11,112,680 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,086,464 - 11,112,670 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1610,955,215 - 10,981,372 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0610,935,026 - 10,961,189 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,169,072 - 11,195,233 (+)NCBIUU_Cfam_GSD_1.0
Tecpr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344139,163,869 - 139,188,658 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936750756,072 - 781,549 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936750756,602 - 781,422 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TECPR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl35,414,074 - 5,442,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.135,414,071 - 5,442,953 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.235,473,363 - 5,500,906 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tecpr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474031,676,044 - 31,704,820 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474031,676,044 - 31,704,828 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 35
Low 16 20 25
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000015845   ⟹   ENSCSAP00000013773
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2814,912,529 - 14,956,059 (+)Ensembl
RefSeq Acc Id: XM_008018701   ⟹   XP_008016892
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12814,912,281 - 14,953,427 (+)NCBI
Vero_WHO_p1.0NW_0236660701,123,889 - 1,163,984 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008018702   ⟹   XP_008016893
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12814,912,545 - 14,953,427 (+)NCBI
Vero_WHO_p1.0NW_0236660701,123,889 - 1,163,953 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008018703   ⟹   XP_008016894
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12814,912,281 - 14,952,162 (+)NCBI
Vero_WHO_p1.0NW_0236660701,123,889 - 1,163,984 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037990358   ⟹   XP_037846286
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660701,131,992 - 1,163,984 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008016892 (Get FASTA)   NCBI Sequence Viewer  
  XP_008016893 (Get FASTA)   NCBI Sequence Viewer  
  XP_008016894 (Get FASTA)   NCBI Sequence Viewer  
  XP_037846286 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013773.1
Reference Protein Sequences
RefSeq Acc Id: XP_008016892   ⟸   XM_008018701
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYT4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008016894   ⟸   XM_008018703
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RYT4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008016893   ⟸   XM_008018702
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RYT4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000013773   ⟸   ENSCSAT00000015845
RefSeq Acc Id: XP_037846286   ⟸   XM_037990358
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017751 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015845.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro Beta-propeller_rpt_TECPR UniProtKB/TrEMBL
  Peroxin UniProtKB/TrEMBL
  Peroxin/Ferlin UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
NCBI Gene TECPR1 ENTREZGENE
PANTHER DYSFERLIN-RELATED UniProtKB/TrEMBL
  TECTONIN BETA-PROPELLER REPEAT-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Hyd_WA UniProtKB/TrEMBL
  Pex24p UniProtKB/TrEMBL
  Tectonin UniProtKB/TrEMBL
SMART DysFC UniProtKB/TrEMBL
  DysFN UniProtKB/TrEMBL
  TECPR UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A0D9RYT4 ENTREZGENE, UniProtKB/TrEMBL