Cnga3 (cyclic nucleotide gated channel alpha 3) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Cnga3 (cyclic nucleotide gated channel alpha 3) Mus musculus
Analyze
Symbol: Cnga3
Name: cyclic nucleotide gated channel alpha 3
RGD ID: 735957
MGI Page MGI
Description: Enables intracellularly cyclic nucleotide-activated monoatomic cation channel activity. Acts upstream of or within retinal cone cell development. Located in cone photoreceptor outer segment and plasma membrane. Is expressed in eye; gut; and male reproductive gland or organ. Used to study Leber congenital amaurosis 2 and achromatopsia 2. Human ortholog(s) of this gene implicated in achromatopsia 2 and color blindness. Orthologous to human CNGA3 (cyclic nucleotide gated channel subunit alpha 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CNG; CNG channel alpha-3; CNG-3; CNG3; CNGgust; cone photoreceptor cGMP-gated channel subunit alpha; cone photoreceptor cGMP-gated channel subunit alpha-3; cyclic nucleotide-gated cation channel alpha-3; cyclic nucleotide-gated channel alpha-3; cyclic nucleotide-gated channel subunit alpha 3; gustatory cyclic nucleotide-gated cation channel
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,257,317 - 37,302,465 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,253,515 - 37,302,465 (+)EnsemblGRCm39 Ensembl
GRCm38137,218,241 - 37,263,384 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,214,434 - 37,263,384 (+)EnsemblGRCm38mm10GRCm38
MGSCv37137,276,106 - 37,320,229 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,163,807 - 37,207,930 (+)NCBIMGSCv36mm8
Celera136,995,421 - 37,043,436 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Calcium signalling remodelling and disease. Berridge MJ Biochem Soc Trans. 2012 Apr;40(2):297-309. doi: 10.1042/BST20110766.
2. Cyclic nucleotide-gated ion channels. Kaupp UB and Seifert R, Physiol Rev. 2002 Jul;82(3):769-824.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Mutations in CNGA3 impair trafficking or function of cone cyclic nucleotide-gated channels, resulting in achromatopsia. Reuter P, etal., Hum Mutat. 2008 Oct;29(10):1228-36. doi: 10.1002/humu.20790.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. CNGA3 mutations in hereditary cone photoreceptor disorders. Wissinger B, etal., Am J Hum Genet 2001 Oct;69(4):722-37. Epub 2001 Aug 30.
Additional References at PubMed
PMID:10377453   PMID:10662822   PMID:10813773   PMID:11528395   PMID:12477932   PMID:12808468   PMID:14610273   PMID:15161873   PMID:15623801   PMID:15634774   PMID:15762991   PMID:15790924  
PMID:16014418   PMID:16141072   PMID:16687517   PMID:16980309   PMID:17724338   PMID:18303857   PMID:18446207   PMID:18596157   PMID:18665891   PMID:19060203   PMID:20088482   PMID:20165899  
PMID:20238023   PMID:20519530   PMID:20576849   PMID:20624591   PMID:20637621   PMID:20711184   PMID:20846178   PMID:21052544   PMID:21124780   PMID:21124784   PMID:21813679   PMID:21873635  
PMID:21893936   PMID:22183405   PMID:22192355   PMID:22247469   PMID:22248097   PMID:22493484   PMID:22509403   PMID:23384572   PMID:23740940   PMID:24027293   PMID:24194600   PMID:24221507  
PMID:24559673   PMID:24658860   PMID:24664681   PMID:25344628   PMID:25392995   PMID:25485757   PMID:25670495   PMID:25706871   PMID:25822371   PMID:25855802   PMID:26124274   PMID:26740549  
PMID:26807953   PMID:26818794   PMID:26965927   PMID:27301998   PMID:27328943   PMID:27383593   PMID:27669145   PMID:28143742   PMID:28495882   PMID:28581442   PMID:28959188   PMID:29131863  
PMID:29180667   PMID:29625451   PMID:30418171   PMID:31182474   PMID:31819340   PMID:31846668   PMID:32173907   PMID:32270761   PMID:32290105   PMID:32325033   PMID:32878923   PMID:34360834  
PMID:34582935   PMID:38355793   PMID:39561777  


Genomics

Comparative Map Data
Cnga3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,257,317 - 37,302,465 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,253,515 - 37,302,465 (+)EnsemblGRCm39 Ensembl
GRCm38137,218,241 - 37,263,384 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,214,434 - 37,263,384 (+)EnsemblGRCm38mm10GRCm38
MGSCv37137,276,106 - 37,320,229 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,163,807 - 37,207,930 (+)NCBIMGSCv36mm8
Celera136,995,421 - 37,043,436 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
CNGA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,346,456 - 98,398,601 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,346,188 - 98,398,601 (+)EnsemblGRCh38hg38GRCh38
GRCh37298,962,919 - 99,015,064 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,329,050 - 98,381,496 (+)NCBINCBI36Build 36hg18NCBI36
Build 34298,444,917 - 98,473,581NCBI
Celera293,166,338 - 93,218,784 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef292,727,722 - 92,780,234 (+)NCBIHuRef
CHM1_1298,966,936 - 99,019,379 (+)NCBICHM1_1
T2T-CHM13v2.0298,804,385 - 98,856,818 (+)NCBIT2T-CHM13v2.0
Cnga3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,943,353 - 46,989,862 (+)NCBIGRCr8
mRatBN7.2939,447,534 - 39,494,044 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,448,034 - 39,493,183 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx947,943,588 - 47,990,097 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,066,347 - 53,112,858 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0951,348,230 - 51,394,733 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0943,807,412 - 43,858,225 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,807,677 - 43,854,396 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0943,476,297 - 43,497,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,180,295 - 36,203,098 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,181,708 - 36,204,512 (+)NCBI
Celera937,227,455 - 37,249,072 (+)NCBICelera
Cytogenetic Map9q21NCBI
Cnga3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,884,309 - 4,906,902 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554704,884,054 - 4,907,151 (+)NCBIChiLan1.0ChiLan1.0
CNGA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21230,043,405 - 30,074,910 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A30,046,167 - 30,077,672 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,911,053 - 100,962,278 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,259,808 - 99,308,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A99,259,808 - 99,308,517 (+)Ensemblpanpan1.1panPan2
CNGA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,232,716 - 44,278,555 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1044,234,004 - 44,260,746 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1044,156,508 - 44,183,215 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01045,105,862 - 45,150,463 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1045,104,784 - 45,151,081 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,817,459 - 44,844,164 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01045,108,283 - 45,135,227 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01045,284,117 - 45,310,870 (-)NCBIUU_Cfam_GSD_1.0
Cnga3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,246,488 - 84,286,560 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367441,514,821 - 1,540,580 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367441,499,431 - 1,537,784 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNGA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,874,250 - 55,922,979 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,872,607 - 55,936,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2358,478,654 - 58,496,156 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNGA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,039,281 - 2,124,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,096,232 - 2,123,231 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041169,587,189 - 169,645,494 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnga3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247493,458,991 - 3,483,003 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247493,458,997 - 3,482,697 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cnga3
3044 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:515
Count of miRNA genes:379
Interacting mature miRNAs:429
Transcripts:ENSMUST00000027288, ENSMUST00000134238
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse

Markers in Region
PMC22124P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38137,261,058 - 37,261,341UniSTSGRCm38
MGSCv37137,317,903 - 37,318,186UniSTSGRCm37
Celera137,041,119 - 37,041,402UniSTS
Cytogenetic Map1BUniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001282010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ238239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ238240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ238241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ167467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MN381859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000027288   ⟹   ENSMUSP00000027288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl137,258,286 - 37,302,465 (+)Ensembl
GRCm38.p6 Ensembl137,219,205 - 37,263,384 (+)Ensembl
Ensembl Acc Id: ENSMUST00000191981   ⟹   ENSMUSP00000142235
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl137,253,515 - 37,281,021 (+)Ensembl
GRCm38.p6 Ensembl137,214,434 - 37,241,940 (+)Ensembl
Ensembl Acc Id: ENSMUST00000194195   ⟹   ENSMUSP00000142075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl137,257,460 - 37,301,265 (+)Ensembl
GRCm38.p6 Ensembl137,218,379 - 37,262,184 (+)Ensembl
Ensembl Acc Id: ENSMUST00000195272   ⟹   ENSMUSP00000142175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl137,257,460 - 37,301,265 (+)Ensembl
GRCm38.p6 Ensembl137,218,379 - 37,262,184 (+)Ensembl
RefSeq Acc Id: NM_001282010   ⟹   NP_001268939
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39137,257,359 - 37,302,465 (+)NCBI
GRCm38137,218,278 - 37,263,384 (+)NCBI
Celera136,994,446 - 37,043,436 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001420073   ⟹   NP_001407002
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39137,258,277 - 37,302,465 (+)NCBI
RefSeq Acc Id: NM_001420074   ⟹   NP_001407003
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39137,258,277 - 37,302,465 (+)NCBI
RefSeq Acc Id: NM_009918   ⟹   NP_034048
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39137,258,277 - 37,302,465 (+)NCBI
GRCm38137,219,205 - 37,263,384 (+)NCBI
MGSCv37137,276,106 - 37,320,229 (+)RGD
Celera136,994,446 - 37,043,436 (+)NCBI
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017313745   ⟹   XP_017169234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39137,257,317 - 37,302,465 (+)NCBI
GRCm38137,218,241 - 37,262,617 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313748   ⟹   XP_017169237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39137,257,317 - 37,302,465 (+)NCBI
GRCm38137,218,241 - 37,263,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157115   ⟹   XP_036013008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39137,269,701 - 37,302,465 (+)NCBI
Sequence:
RefSeq Acc Id: NP_034048   ⟸   NM_009918
- Peptide Label: isoform 2
- UniProtKB: Q8CFV6 (UniProtKB/Swiss-Prot),   Q9WV01 (UniProtKB/Swiss-Prot),   Q9JJZ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001268939   ⟸   NM_001282010
- Peptide Label: isoform 1
- UniProtKB: A0A0A6YXW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169234   ⟸   XM_017313745
- Peptide Label: isoform X1
- UniProtKB: Q8CFV6 (UniProtKB/Swiss-Prot),   Q9WV01 (UniProtKB/Swiss-Prot),   Q9JJZ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169237   ⟸   XM_017313748
- Peptide Label: isoform X2
- UniProtKB: A0A6H2E2T0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000027288   ⟸   ENSMUST00000027288
Ensembl Acc Id: ENSMUSP00000142235   ⟸   ENSMUST00000191981
Ensembl Acc Id: ENSMUSP00000142075   ⟸   ENSMUST00000194195
Ensembl Acc Id: ENSMUSP00000142175   ⟸   ENSMUST00000195272
RefSeq Acc Id: XP_036013008   ⟸   XM_036157115
- Peptide Label: isoform X1
- UniProtKB: Q9JJZ8 (UniProtKB/Swiss-Prot),   Q8CFV6 (UniProtKB/Swiss-Prot),   Q9WV01 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001407002   ⟸   NM_001420073
- Peptide Label: isoform 3
- UniProtKB: A0A6H2E2T0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407003   ⟸   NM_001420074
- Peptide Label: isoform 4
Protein Domains
Cyclic nucleotide-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJZ8-F1-model_v2 AlphaFold Q9JJZ8 1-631 view protein structure

Promoters
RGD ID:6873516
Promoter ID:EPDNEW_M185
Type:initiation region
Name:Cnga3_1
Description:Mus musculus cyclic nucleotide gated channel alpha 3 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38137,219,196 - 37,219,256EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1341818 AgrOrtholog
Ensembl Genes ENSMUSG00000026114 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027288 ENTREZGENE
  ENSMUST00000027288.10 UniProtKB/Swiss-Prot
  ENSMUST00000191981.6 UniProtKB/TrEMBL
  ENSMUST00000194195 ENTREZGENE
  ENSMUST00000194195.6 UniProtKB/Swiss-Prot
  ENSMUST00000195272 ENTREZGENE
  ENSMUST00000195272.6 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.120.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helix hairpin bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CLZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNG_Cation_Channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  cNMP-bd-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  cNMP-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  cNMP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12790 UniProtKB/Swiss-Prot
MGD MGI:1341818 ENTREZGENE
NCBI Gene 12790 ENTREZGENE
PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL ALPHA-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CLZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  cNMP_binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cnga3 PhenoGen
PROSITE CNMP_BINDING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNMP_BINDING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNMP_BINDING_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART cNMP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51206 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YXW9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A6YY14_MOUSE UniProtKB/TrEMBL
  A0A6H2E2T0 ENTREZGENE, UniProtKB/TrEMBL
  CNGA3_MOUSE UniProtKB/Swiss-Prot
  Q8CFV6 ENTREZGENE
  Q9JJZ8 ENTREZGENE
  Q9WV01 ENTREZGENE
UniProt Secondary Q8CFV6 UniProtKB/Swiss-Prot
  Q9WV01 UniProtKB/Swiss-Prot