Advanced Search (OLGA)

Gene: Cnga3 (cyclic nucleotide gated channel alpha 3) Mus musculus

Subscribe to Updates

Analyze

Symbol:

Cnga3

Name:

cyclic nucleotide gated channel alpha 3

RGD ID:

735957

MGI Page

MGI

Description:

Enables intracellularly cyclic nucleotide-activated monoatomic cation channel activity. Acts upstream of or within retinal cone cell development. Located in cone photoreceptor outer segment and plasma membrane. Is expressed in eye; gut; and male reproductive gland or organ. Used to study Leber congenital amaurosis 2 and achromatopsia 2. Human ortholog(s) of this gene implicated in achromatopsia 2 and color blindness. Orthologous to human CNGA3 (cyclic nucleotide gated channel subunit alpha 3).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CNG; CNG channel alpha-3; CNG-3; CNG3; CNGgust; cone photoreceptor cGMP-gated channel subunit alpha; cone photoreceptor cGMP-gated channel subunit alpha-3; cyclic nucleotide-gated cation channel alpha-3; cyclic nucleotide-gated channel alpha-3; cyclic nucleotide-gated channel subunit alpha 3; gustatory cyclic nucleotide-gated cation channel

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	37,257,317 - 37,302,465 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	37,253,515 - 37,302,465 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	37,218,241 - 37,263,384 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	37,214,434 - 37,263,384 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	37,276,106 - 37,320,229 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	37,163,807 - 37,207,930 (+)	NCBI		MGSCv36	mm8
Celera	1	36,995,421 - 37,043,436 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	15.46	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	Achromatopsia 1		ISO	RGD:733295	9068452	DNA:missense mutations:exon:c.682G>A (p.E228K), c.1315C>T (p.R439W), c.1405G>A (p.A469T) (human)	RGD
Cnga3	Mouse	color blindness		ISO	RGD:733295	734792		RGD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	achromatopsia		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Achromatopsia	ClinVar	PMID:11536077\|PMID:14757870\|PMID:15712225\|PMID:15743887\|PMID:16961972\|PMID:17265047\|PMID:17576681\|PMID:17693388\|PMID:18445228\|PMID:18521937\|PMID:20079539\|PMID:20088482\|PMID:20238023\|PMID:20506298\|PMID:20549516\|PMID:21778272\|PMID:21911670\|PMID:22995991\|PMID:23082193\|PMID:23972307\|PMID:24033266\|PMID:24148654\|PMID:24504161\|PMID:24903488\|PMID:25168900\|PMID:25616768\|PMID:25637600\|PMID:25741868\|PMID:25943428\|PMID:26036949\|PMID:26355662\|PMID:26992781\|PMID:27479814\|PMID:27535533\|PMID:27820752\|PMID:28159970\|PMID:28224992\|PMID:28341476\|PMID:28492532\|PMID:28559085\|PMID:29053603\|PMID:29618791\|PMID:30078014\|PMID:30418171\|PMID:30609409\|PMID:30653986\|PMID:30682209\|PMID:30711023\|PMID:30804581\|PMID:31144483\|PMID:31429209\|PMID:31456290\|PMID:3158961\|PMID:31589614\|PMID:31816670\|PMID:31964843\|PMID:31980526\|PMID:32531858\|PMID:32913385\|PMID:33083013\|PMID:33562422\|PMID:33749171\|PMID:34426522\|PMID:34449556\|PMID:35052368\|PMID:35119454\|PMID:35260635\|PMID:35456423\|PMID:36259723\|PMID:36460718\|PMID:36833446\|PMID:36909829\|PMID:9536098\|PMID:9662398
Cnga3	Mouse	Achromatopsia 1		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Rod monochromatism	ClinVar	PMID:11536077\|PMID:14757870\|PMID:15712225\|PMID:17693388\|PMID:18445228\|PMID:20079539\|PMID:20088482\|PMID:20506298\|PMID:20549516\|PMID:23972307\|PMID:24504161\|PMID:24903488\|PMID:25168900\|PMID:25616768\|PMID:25741868\|PMID:26355662\|PMID:26992781\|PMID:27479814\|PMID:27820752\|PMID:28224992\|PMID:28492532\|PMID:28559085\|PMID:29053603\|PMID:30078014\|PMID:30418171\|PMID:30653986\|PMID:30682209\|PMID:31429209\|PMID:31456290\|PMID:3158961\|PMID:31589614\|PMID:31816670\|PMID:31964843\|PMID:32531858\|PMID:32913385\|PMID:33562422\|PMID:33749171\|PMID:34426522\|PMID:34449556\|PMID:35119454\|PMID:36460718\|PMID:9662398
Cnga3	Mouse	achromatopsia 2		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Achromatopsia 2 \| ClinVar Annotator: match by term: CNGA3-related condition more ...	ClinVar	PMID:11536077\|PMID:14715947\|PMID:14757870\|PMID:15712225\|PMID:15743887\|PMID:15980212\|PMID:16199547\|PMID:16961972\|PMID:17265047\|PMID:17576681\|PMID:17693388\|PMID:18445228\|PMID:18521937\|PMID:19592100\|PMID:20079539\|PMID:20088482\|PMID:20238023\|PMID:20506298\|PMID:20549516\|PMID:21268679\|PMID:21778272\|PMID:21901789\|PMID:21911670\|PMID:21912902\|PMID:22995991\|PMID:23082193\|PMID:23105016\|PMID:23972307\|PMID:24033266\|PMID:24148654\|PMID:24269407\|PMID:24504161\|PMID:24676353\|PMID:24903488\|PMID:24906859\|PMID:25052312\|PMID:25168900\|PMID:25616768\|PMID:25637600\|PMID:25741868\|PMID:25943428\|PMID:26036949\|PMID:26106334\|PMID:26355662\|PMID:26407004\|PMID:26493561\|PMID:26992781\|PMID:27208204\|PMID:27479814\|PMID:27535533\|PMID:27820752\|PMID:28041643\|PMID:28159970\|PMID:28224992\|PMID:28341476\|PMID:28492532\|PMID:28559085\|PMID:28991257\|PMID:29053603\|PMID:29099798\|PMID:29165669\|PMID:29618791\|PMID:30078014\|PMID:30289319\|PMID:30337596\|PMID:30418171\|PMID:30609409\|PMID:30653986\|PMID:30682209\|PMID:30711023\|PMID:30804581\|PMID:31144483\|PMID:31216405\|PMID:31237654\|PMID:31290651\|PMID:31429209\|PMID:31456290\|PMID:3158961\|PMID:31589614\|PMID:31725702\|PMID:31816670\|PMID:31877759\|PMID:31963381\|PMID:3196484\|PMID:31964843\|PMID:31980526\|PMID:32037395\|PMID:32141364\|PMID:32368696\|PMID:32531858\|PMID:32581362\|PMID:32783370\|PMID:32869108\|PMID:32913385\|PMID:33083013\|PMID:33546218\|PMID:33562422\|PMID:33749171\|PMID:34426522\|PMID:34449556\|PMID:35052368\|PMID:35119454\|PMID:35260635\|PMID:35332618\|PMID:35456422\|PMID:35456423\|PMID:35754085\|PMID:3625972\|PMID:36259723\|PMID:36284460\|PMID:36460718\|PMID:36833446\|PMID:36980963\|PMID:37689994\|PMID:38219857\|PMID:4903488\|PMID:9536098\|PMID:9662398
Cnga3	Mouse	achromatopsia 3		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Achromatopsia 3 \| ClinVar Annotator: match by term: ROD MONOCHROMATISM more ...	ClinVar	PMID:11536077\|PMID:15712225\|PMID:17693388\|PMID:18521937\|PMID:20549516\|PMID:24148654\|PMID:24903488\|PMID:25741868\|PMID:26992781\|PMID:28492532\|PMID:31429209\|PMID:31456290\|PMID:31589614\|PMID:31964843\|PMID:33749171\|PMID:34426522\|PMID:9662398
Cnga3	Mouse	color blindness		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Color vision defect	ClinVar	PMID:11536077\|PMID:15743887\|PMID:17693388\|PMID:20238023\|PMID:21911670\|PMID:23082193\|PMID:25741868\|PMID:26992781\|PMID:28492532\|PMID:30418171\|PMID:30653986\|PMID:30682209\|PMID:31429209\|PMID:31456290\|PMID:31589614\|PMID:31964843\|PMID:32531858\|PMID:34449556\|PMID:35119454\|PMID:36833446
Cnga3	Mouse	cone dystrophy		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Cone dystrophy	ClinVar	PMID:18521937\|PMID:25741868\|PMID:26493561\|PMID:28041643\|PMID:28492532\|PMID:30289319\|PMID:32783370\|PMID:32913385\|PMID:35332618\|PMID:36259723
Cnga3	Mouse	cone-rod dystrophy		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Cone-rod dystrophy	ClinVar	PMID:11536077\|PMID:24033266\|PMID:25741868\|PMID:28492532\|PMID:30289319\|PMID:36909829
Cnga3	Mouse	Eye Abnormalities		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Abnormality of the eye	ClinVar	PMID:11536077\|PMID:14757870\|PMID:15743887\|PMID:17693388\|PMID:18445228\|PMID:23972307\|PMID:24033266\|PMID:24903488\|PMID:25637600\|PMID:25741868\|PMID:27624628\|PMID:28041643\|PMID:28224992\|PMID:28341476\|PMID:28492532\|PMID:28559085\|PMID:30418171\|PMID:30653986\|PMID:30682209\|PMID:31589614\|PMID:31964843\|PMID:32531858\|PMID:32581362\|PMID:34426522\|PMID:34449556\|PMID:35052368\|PMID:35119454\|PMID:35260635\|PMID:35456423\|PMID:36980963
Cnga3	Mouse	fundus dystrophy		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Retinal dystrophy	ClinVar	PMID:11536077\|PMID:14757870\|PMID:15712225\|PMID:15743887\|PMID:15980212\|PMID:16961972\|PMID:17265047\|PMID:17693388\|PMID:18445228\|PMID:18521937\|PMID:19592100\|PMID:20079539\|PMID:20088482\|PMID:20238023\|PMID:20506298\|PMID:20549516\|PMID:21268679\|PMID:21778272\|PMID:21911670\|PMID:22995991\|PMID:23082193\|PMID:23105016\|PMID:23972307\|PMID:24033266\|PMID:24148654\|PMID:24504161\|PMID:24676353\|PMID:24903488\|PMID:24906859\|PMID:25168900\|PMID:25283059\|PMID:25525159\|PMID:25616768\|PMID:25637600\|PMID:25741868\|PMID:25943428\|PMID:26036949\|PMID:26355662\|PMID:26407004\|PMID:26493561\|PMID:26992781\|PMID:27208204\|PMID:27479814\|PMID:27535533\|PMID:27820752\|PMID:28041643\|PMID:28159970\|PMID:28224992\|PMID:28341476\|PMID:28492532\|PMID:28559085\|PMID:28991257\|PMID:29099798\|PMID:29618791\|PMID:30078014\|PMID:30289319\|PMID:30337596\|PMID:30418171\|PMID:30609409\|PMID:30653986\|PMID:30682209\|PMID:30711023\|PMID:30804581\|PMID:31144483\|PMID:31216405\|PMID:31237654\|PMID:31429209\|PMID:31456290\|PMID:3158961\|PMID:31589614\|PMID:31725702\|PMID:31816670\|PMID:31877759\|PMID:31963381\|PMID:3196484\|PMID:31964843\|PMID:31980526\|PMID:32037395\|PMID:32141364\|PMID:32368696\|PMID:32531858\|PMID:32581362\|PMID:32783370\|PMID:32869108\|PMID:32913385\|PMID:33083013\|PMID:33546218\|PMID:33562422\|PMID:33749171\|PMID:34426522\|PMID:34449556\|PMID:35052368\|PMID:35119454\|PMID:35260635\|PMID:35332618\|PMID:35456422\|PMID:35456423\|PMID:3625972\|PMID:36259723\|PMID:36284460\|PMID:36460718\|PMID:36833446\|PMID:36980963\|PMID:37689994\|PMID:38219857\|PMID:9662398
Cnga3	Mouse	genetic disease		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:11536077\|PMID:17265047\|PMID:17693388\|PMID:18521937\|PMID:23105016\|PMID:23972307\|PMID:24033266\|PMID:24504161\|PMID:24903488\|PMID:25616768\|PMID:25741868\|PMID:28492532\|PMID:29618791\|PMID:31456290\|PMID:31964843\|PMID:31980526\|PMID:32531858\|PMID:9662398
Cnga3	Mouse	macular degeneration		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Macular dystrophy	ClinVar	PMID:11536077\|PMID:17693388\|PMID:18445228\|PMID:23972307\|PMID:24033266\|PMID:25741868\|PMID:28224992\|PMID:28341476\|PMID:28492532\|PMID:28559085\|PMID:30418171\|PMID:30653986\|PMID:30682209\|PMID:31589614\|PMID:31964843\|PMID:34426522\|PMID:34449556\|PMID:35052368\|PMID:35119454\|PMID:35260635\|PMID:35456423
Cnga3	Mouse	optic atrophy		ISO	RGD:733295	8554872	ClinVar Annotator: match by term: Optic atrophy	ClinVar	PMID:11536077\|PMID:15743887\|PMID:17693388\|PMID:20238023\|PMID:21911670\|PMID:23082193\|PMID:25741868\|PMID:26992781\|PMID:28492532\|PMID:30418171\|PMID:30653986\|PMID:30682209\|PMID:31429209\|PMID:31456290\|PMID:31589614\|PMID:31964843\|PMID:32531858\|PMID:34449556\|PMID:35119454\|PMID:36833446

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	achromatopsia 2		ISO	RGD:733295	11554173	CTD Direct Evidence: marker/mechanism	CTD
Cnga3	Mouse	color blindness		ISO	RGD:733295	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:30418171

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	achromatopsia 2		IAGP		13592920	OMIM:216900	MouseDO

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	achromatopsia 2		ISO	RGD:733295	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	17beta-estradiol	decreases expression	ISO	RGD:733295	6480464	Estradiol results in decreased expression of CNGA3 mRNA	CTD	PMID:31614463
Cnga3	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	RGD:70948	6480464	Tetrachlorodibenzodioxin results in decreased expression of CNGA3 mRNA	CTD	PMID:32109520
Cnga3	Mouse	acrylamide	decreases expression	ISO	RGD:733295	6480464	Acrylamide results in decreased expression of CNGA3 mRNA	CTD	PMID:32763439
Cnga3	Mouse	aflatoxin B1	increases methylation	ISO	RGD:733295	6480464	Aflatoxin B1 results in increased methylation of CNGA3 intron	CTD	PMID:30157460
Cnga3	Mouse	Aflatoxin B2 alpha	decreases methylation	ISO	RGD:733295	6480464	aflatoxin B2 results in decreased methylation of CNGA3 intron	CTD	PMID:30157460
Cnga3	Mouse	ammonium chloride	affects expression	ISO	RGD:70948	6480464	Ammonium Chloride affects the expression of CNGA3 mRNA	CTD	PMID:16483693
Cnga3	Mouse	arsane	affects methylation	ISO	RGD:733295	6480464	Arsenic affects the methylation of CNGA3 gene	CTD	PMID:25304211
Cnga3	Mouse	arsenic atom	affects methylation	ISO	RGD:733295	6480464	Arsenic affects the methylation of CNGA3 gene	CTD	PMID:25304211
Cnga3	Mouse	benzo[a]pyrene	increases expression	ISO	RGD:733295	6480464	Benzo(a)pyrene results in increased expression of CNGA3 mRNA	CTD	PMID:22316170
Cnga3	Mouse	benzo[a]pyrene	increases methylation	ISO	RGD:733295	6480464	Benzo(a)pyrene results in increased methylation of CNGA3 5' UTR; Benzo(a)pyrene results in increased methylation of more ...	CTD	PMID:27901495
Cnga3	Mouse	benzo[a]pyrene	affects methylation	ISO	RGD:733295	6480464	Benzo(a)pyrene affects the methylation of CNGA3 promoter	CTD	PMID:27901495
Cnga3	Mouse	bisphenol A	decreases expression	ISO	RGD:70948	6480464	bisphenol A results in decreased expression of CNGA3 mRNA	CTD	PMID:25181051
Cnga3	Mouse	bisphenol A	increases methylation	ISO	RGD:733295	6480464	bisphenol A results in increased methylation of CNGA3 gene	CTD	PMID:31601247
Cnga3	Mouse	paracetamol	increases expression	ISO	RGD:733295	6480464	Acetaminophen results in increased expression of CNGA3 mRNA	CTD	PMID:26690555
Cnga3	Mouse	paraquat	decreases expression	ISO	RGD:70948	6480464	Paraquat results in decreased expression of CNGA3 mRNA	CTD	PMID:32680482
Cnga3	Mouse	pioglitazone	multiple interactions	EXP		6480464	[N-nitroso-tris-chloroethylurea co-treated with pioglitazone] results in increased expression of CNGA3 mRNA	CTD	PMID:27935865
Cnga3	Mouse	pirinixic acid	increases expression	ISO	RGD:70948	6480464	pirinixic acid results in increased expression of CNGA3 mRNA	CTD	PMID:12832660
Cnga3	Mouse	triptonide	increases expression	EXP		6480464	triptonide results in increased expression of CNGA3 mRNA	CTD	PMID:33045310
Cnga3	Mouse	valproic acid	increases expression	ISO	RGD:733295	6480464	Valproic Acid results in increased expression of CNGA3 mRNA	CTD	PMID:23179753\|PMID:27188386

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	calcium ion transmembrane transport	involved_in	IEA	UniProtKB-KW:KW-0107	2290270		UniProt	GO_REF:0000043
Cnga3	Mouse	inorganic cation import across plasma membrane	involved_in	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	inorganic cation import across plasma membrane		ISO	RGD:70948	9068941		RGD	PMID:9278419\|REF_RGD_ID:70687
Cnga3	Mouse	membrane depolarization	involved_in	ISO	RGD:70948	9068941	PMID:15178415	UniProt	PMID:15178415\|REF_RGD_ID:405650286
Cnga3	Mouse	monoatomic cation transmembrane transport	involved_in	IBA	PANTHER:PTN000811708\|FB:FBgn0266346\|WB:WBGene00006525\|WB:WBGene00006526\|FB:FBgn0261612	2290270		GO_Central	GO_REF:0000033
Cnga3	Mouse	monoatomic cation transport	involved_in	ISO	UniProtKB:Q16281	2290270		GO_Central	GO_REF:0000119
Cnga3	Mouse	monoatomic ion transmembrane transport	involved_in	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	monoatomic ion transmembrane transport		ISO	RGD:70948	9068941		RGD	PMID:11387380\|REF_RGD_ID:1600869
Cnga3	Mouse	response to cAMP	involved_in	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	response to cAMP		ISO	RGD:70948	9068941		RGD	PMID:11387380\|REF_RGD_ID:1600869
Cnga3	Mouse	response to magnesium ion		ISO	RGD:70948	9068941		RGD	PMID:11387380\|REF_RGD_ID:1600869
Cnga3	Mouse	response to magnesium ion	involved_in	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	retina development in camera-type eye	acts_upstream_of_or_within	IGI	MGI:1353425\|MGI:95778	2290270	PMID:21124780	MGI	PMID:21124780
Cnga3	Mouse	retinal cone cell development	acts_upstream_of_or_within	IMP	MGI:3608770	2290270	PMID:21052544	MGI	PMID:21052544
Cnga3	Mouse	sodium ion transmembrane transport	involved_in	IEA	GO:0005272	2290270		GOC	GO_REF:0000108
Cnga3	Mouse	sodium ion transport	involved_in	ISO	RGD:70948	9068941	PMID:15178415	UniProt	PMID:15178415\|REF_RGD_ID:405650286
Cnga3	Mouse	visual perception	involved_in	IEA	UniProtKB-KW:KW-0844	2290270		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	axon initial segment		ISO	RGD:70948	9068941		RGD	PMID:18434027\|REF_RGD_ID:6902905
Cnga3	Mouse	axon initial segment	located_in	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	cone photoreceptor outer segment	located_in	IDA		2290270	PMID:10813773	MGI	PMID:10813773
Cnga3	Mouse	dendrite	located_in	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	dendrite		ISO	RGD:70948	9068941		RGD	PMID:18434027\|REF_RGD_ID:6902905
Cnga3	Mouse	glial cell projection		ISO	RGD:70948	9068941		RGD	PMID:18434027\|REF_RGD_ID:6902905
Cnga3	Mouse	glial cell projection	located_in	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	intracellular cyclic nucleotide activated cation channel complex	part_of	IBA	PANTHER:PTN000811708\|FB:FBgn0261612\|RGD:2367\|FB:FBgn0266346\|RGD:621815\|RGD:621809\|RGD:619844	2290270		GO_Central	GO_REF:0000033
Cnga3	Mouse	neuronal cell body		ISO	RGD:70948	9068941		RGD	PMID:18434027\|REF_RGD_ID:6902905
Cnga3	Mouse	neuronal cell body	located_in	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	perikaryon		ISO	RGD:70948	9068941		RGD	PMID:12021210\|REF_RGD_ID:7205506
Cnga3	Mouse	perikaryon	located_in	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	photoreceptor outer segment	located_in	ISO	UniProtKB:Q9QX26	2290270	PMID:10813773	MGI	PMID:10813773
Cnga3	Mouse	photoreceptor outer segment	located_in	IDA		2290270	PMID:15634774	MGI	PMID:15634774
Cnga3	Mouse	plasma membrane	located_in	ISO	UniProtKB:Q16281	2290270		GO_Central	GO_REF:0000119
Cnga3	Mouse	plasma membrane	is_active_in	IBA	PANTHER:PTN000811708\|UniProtKB:Q28181\|MGI:108040\|RGD:2367\|MGI:88436\|MGI:1341818\|UniProtKB:Q16281\|RGD:621809\|RGD:619844\|MGI:2664099\|UniProtKB:Q9NQW8	2290270		GO_Central	GO_REF:0000033
Cnga3	Mouse	plasma membrane	located_in	IDA		2290270	PMID:10813773	MGI	PMID:10813773
Cnga3	Mouse	transmembrane transporter complex	part_of	ISO	UniProtKB:Q16281	2290270		GO_Central	GO_REF:0000119

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	cadherin binding	enables	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	cadherin binding		ISO	RGD:619760	9068941	protein C-terminus binding	RGD	PMID:23329832\|REF_RGD_ID:8662293
Cnga3	Mouse	calcium channel activity	enables	IEA	UniProtKB-KW:KW-0107	2290270		UniProt	GO_REF:0000043
Cnga3	Mouse	cGMP binding	enables	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	cGMP binding	enables	IEA	UniProtKB-KW:KW-0142	2290270		UniProt	GO_REF:0000043
Cnga3	Mouse	cGMP binding	enables	ISO	UniProtKB:Q16281	2290270		GO_Central	GO_REF:0000119
Cnga3	Mouse	cGMP binding	enables	IBA	PANTHER:PTN000025806\|UniProtKB:Q16281\|RGD:70948\|UniProtKB:P29973\|RGD:619844\|RGD:2367\|UniProtKB:Q00194\|RGD:621815	2290270		GO_Central	GO_REF:0000033
Cnga3	Mouse	cGMP binding		ISO	RGD:70948	9068941		RGD	PMID:11387380\|REF_RGD_ID:1600869
Cnga3	Mouse	intracellularly cAMP-activated cation channel activity	enables	IBA	PANTHER:PTN000025806\|UniProtKB:P29973\|RGD:619844\|UniProtKB:Q16281\|UniProtKB:Q29441\|WB:WBGene00006526\|RGD:2367	2290270		GO_Central	GO_REF:0000033
Cnga3	Mouse	intracellularly cAMP-activated cation channel activity	enables	ISO	UniProtKB:Q16281	2290270		GO_Central	GO_REF:0000119
Cnga3	Mouse	intracellularly cGMP-activated cation channel activity	enables	ISO	UniProtKB:Q16281	2290270		GO_Central	GO_REF:0000119
Cnga3	Mouse	intracellularly cGMP-activated cation channel activity	enables	IBA	PANTHER:PTN000811708\|UniProtKB:Q00194\|UniProtKB:Q28181\|UniProtKB:Q9NQW8\|UniProtKB:P29973\|RGD:619844\|WB:WBGene00006526\|UniProtKB:Q16281\|UniProtKB:Q14028\|RGD:621809\|UniProtKB:Q03041\|RGD:621815\|RGD:2367\|UniProtKB:Q29441\|RGD:70948\|MGI:1353562	2290270		GO_Central	GO_REF:0000033
Cnga3	Mouse	intracellularly cGMP-activated cation channel activity		ISO	RGD:70948	9068941		RGD	PMID:11387380\|REF_RGD_ID:1600869
Cnga3	Mouse	intracellularly cGMP-activated cation channel activity	enables	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	intracellularly cyclic nucleotide-activated monoatomic cation channel activity	enables	IPI	PR:Q9JJZ9	2290270	PMID:10662822	MGI	PMID:10662822
Cnga3	Mouse	myosin binding		ISO	RGD:628830	9068941	protein C-terminus binding	RGD	PMID:23329832\|REF_RGD_ID:8662293
Cnga3	Mouse	myosin binding	enables	ISO	RGD:70948	2290270		GO_Central	GO_REF:0000096
Cnga3	Mouse	protein binding	enables	IPI	PR:Q9JJZ9	2290270	PMID:10662822	MGI	PMID:10662822
Cnga3	Mouse	protein-containing complex binding	enables	IBA	PANTHER:PTN002900687\|RGD:2367\|RGD:621809\|RGD:619844	2290270		GO_Central	GO_REF:0000033
Cnga3	Mouse	sodium channel activity	enables	IEA	UniProtKB-KW:KW-0894	2290270		UniProt	GO_REF:0000043

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	calcium transport pathway		ISO	RGD:70948	6893549		RGD
Cnga3	Mouse	calcium/calcium-mediated signaling pathway		ISO	RGD:733295	7204690		RGD
Cnga3	Mouse	visual phototransduction pathway		ISO	RGD:70948	6893549		RGD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnga3	Mouse	abnormal circardian behavior entrainment		IAGP		5509061		MGI	PMID:12808468
Cnga3	Mouse	abnormal cone electrophysiology		IAGP		5509061		MGI	PMID:21052544
Cnga3	Mouse	abnormal eye electrophysiology		IAGP		5509061		MGI	PMID:10377453
Cnga3	Mouse	abnormal eye electrophysiology		IAGP		5509061		MGI	PMID:15161873
Cnga3	Mouse	abnormal eye electrophysiology		IAGP		5509061		MGI	PMID:11528395
Cnga3	Mouse	abnormal eye physiology		IAGP		5509061		MGI	PMID:10377453
Cnga3	Mouse	abnormal kidney morphology		IEA		5509061		MGI
Cnga3	Mouse	abnormal olfactory bulb periglomerular cell morphology		IAGP		5509061		MGI	PMID:17724338
Cnga3	Mouse	abnormal olfactory system physiology		IAGP		5509061		MGI	PMID:17724338
Cnga3	Mouse	abnormal retina cone cell morphology		IEA		5509061		MGI
Cnga3	Mouse	abnormal retina cone cell outer segment morphology		IAGP		5509061		MGI	PMID:10377453
Cnga3	Mouse	abnormal retina cone cell outer segment morphology		IAGP		5509061		MGI	PMID:22509403
Cnga3	Mouse	abnormal retina horizontal cell morphology		IAGP		5509061		MGI	PMID:15161873
Cnga3	Mouse	abnormal retina neuronal layer morphology		IAGP		5509061		MGI	PMID:15161873
Cnga3	Mouse	abnormal retina rod bipolar cell morphology		IAGP		5509061		MGI	PMID:15161873
Cnga3	Mouse	abnormal retina rod cell morphology		IAGP		5509061		MGI	PMID:15161873
Cnga3	Mouse	abnormal visual contrast sensitivity		IAGP		5509061		MGI	PMID:22509403
Cnga3	Mouse	decreased a-wave amplitude		IAGP		5509061		MGI	PMID:34360834
Cnga3	Mouse	decreased b-wave amplitude		IAGP		5509061		MGI	PMID:22509403
Cnga3	Mouse	decreased b-wave amplitude		IAGP		5509061		MGI	PMID:34360834
Cnga3	Mouse	decreased body length		IEA		5509061		MGI
Cnga3	Mouse	decreased retina photoreceptor cell number		IAGP		5509061		MGI	PMID:10377453
Cnga3	Mouse	decreased retina photoreceptor cell number		IAGP		5509061		MGI	PMID:15161873
Cnga3	Mouse	decreased visual acuity		IAGP		5509061		MGI	PMID:22509403
Cnga3	Mouse	enlarged spleen		IEA		5509061		MGI
Cnga3	Mouse	enlarged uterus		IEA		5509061		MGI
Cnga3	Mouse	impaired pupillary reflex		IAGP		5509061		MGI	PMID:12808468
Cnga3	Mouse	increased circulating alanine transaminase level		IEA		5509061		MGI
Cnga3	Mouse	photoreceptor outer segment degeneration		IAGP		5509061		MGI	PMID:22509403
Cnga3	Mouse	preweaning lethality, incomplete penetrance		IEA		5509061		MGI
Cnga3	Mouse	retina cone cell degeneration		IAGP		5509061		MGI	PMID:22509403
Cnga3	Mouse	retina photoreceptor degeneration		IAGP		5509061		MGI	PMID:15161873
Cnga3	Mouse	shortened circadian behavior period		IAGP		5509061		MGI	PMID:12808468

#	Reference Title	Reference Citation
1.	Calcium signalling remodelling and disease.	Berridge MJ Biochem Soc Trans. 2012 Apr;40(2):297-309. doi: 10.1042/BST20110766.
2.	Cyclic nucleotide-gated ion channels.	Kaupp UB and Seifert R, Physiol Rev. 2002 Jul;82(3):769-824.
3.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
4.	MGDs mouse GO annotations	MGD data from the GO Consortium
5.	MGD IEA	MGD IEA
6.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	Mutations in CNGA3 impair trafficking or function of cone cyclic nucleotide-gated channels, resulting in achromatopsia.	Reuter P, etal., Hum Mutat. 2008 Oct;29(10):1228-36. doi: 10.1002/humu.20790.
9.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	CNGA3 mutations in hereditary cone photoreceptor disorders.	Wissinger B, etal., Am J Hum Genet 2001 Oct;69(4):722-37. Epub 2001 Aug 30.

PMID:10377453	PMID:10662822	PMID:10813773	PMID:11528395	PMID:12477932	PMID:12808468	PMID:14610273	PMID:15161873	PMID:15623801	PMID:15634774	PMID:15762991	PMID:15790924
PMID:16014418	PMID:16141072	PMID:16687517	PMID:16980309	PMID:17724338	PMID:18303857	PMID:18446207	PMID:18596157	PMID:18665891	PMID:19060203	PMID:20088482	PMID:20165899
PMID:20238023	PMID:20519530	PMID:20576849	PMID:20624591	PMID:20637621	PMID:20711184	PMID:20846178	PMID:21052544	PMID:21124780	PMID:21124784	PMID:21813679	PMID:21873635
PMID:21893936	PMID:22183405	PMID:22192355	PMID:22247469	PMID:22248097	PMID:22493484	PMID:22509403	PMID:23384572	PMID:23740940	PMID:24027293	PMID:24194600	PMID:24221507
PMID:24559673	PMID:24658860	PMID:24664681	PMID:25344628	PMID:25392995	PMID:25485757	PMID:25670495	PMID:25706871	PMID:25822371	PMID:25855802	PMID:26124274	PMID:26740549
PMID:26807953	PMID:26818794	PMID:26965927	PMID:27152964	PMID:27301998	PMID:27328943	PMID:27383593	PMID:27669145	PMID:28143742	PMID:28495882	PMID:28581442	PMID:28959188
PMID:29131863	PMID:29180667	PMID:29625451	PMID:30418171	PMID:31182474	PMID:31819340	PMID:31846668	PMID:32173907	PMID:32270761	PMID:32290105	PMID:32325033	PMID:32878923
PMID:34360834	PMID:34582935	PMID:38355793	PMID:39561777

Cnga3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	37,257,317 - 37,302,465 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	37,253,515 - 37,302,465 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	37,218,241 - 37,263,384 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	37,214,434 - 37,263,384 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	37,276,106 - 37,320,229 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	37,163,807 - 37,207,930 (+)	NCBI		MGSCv36	mm8
Celera	1	36,995,421 - 37,043,436 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	15.46	NCBI

CNGA3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	98,346,456 - 98,398,601 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	98,346,188 - 98,398,601 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	98,962,919 - 99,015,064 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	98,329,050 - 98,381,496 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	98,444,917 - 98,473,581	NCBI
Celera	2	93,166,338 - 93,218,784 (+)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	92,727,722 - 92,780,234 (+)	NCBI		HuRef
CHM1_1	2	98,966,936 - 99,019,379 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	98,804,385 - 98,856,818 (+)	NCBI		T2T-CHM13v2.0

Cnga3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,943,353 - 46,989,862 (+)	NCBI		GRCr8
mRatBN7.2	9	39,447,534 - 39,494,044 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	39,448,034 - 39,493,183 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	47,943,588 - 47,990,097 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	53,066,347 - 53,112,858 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	51,348,230 - 51,394,733 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,807,412 - 43,858,225 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,807,677 - 43,854,396 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	43,476,297 - 43,497,654 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	36,180,295 - 36,203,098 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	36,181,708 - 36,204,512 (+)	NCBI
Celera	9	37,227,455 - 37,249,072 (+)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

Cnga3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	4,884,309 - 4,906,902 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	4,884,054 - 4,907,151 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNGA3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	30,043,405 - 30,074,910 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	30,046,167 - 30,077,672 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	100,911,053 - 100,962,278 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	99,259,808 - 99,308,524 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	99,259,808 - 99,308,517 (+)	Ensembl	panpan1.1		panPan2

CNGA3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	44,232,716 - 44,278,555 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	44,234,004 - 44,260,746 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	44,156,508 - 44,183,215 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	45,105,862 - 45,150,463 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	45,104,784 - 45,151,081 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	44,817,459 - 44,844,164 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	45,108,283 - 45,135,227 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	45,284,117 - 45,310,870 (-)	NCBI		UU_Cfam_GSD_1.0

Cnga3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	84,246,488 - 84,286,560 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	1,514,821 - 1,540,580 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	1,499,431 - 1,537,784 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNGA3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	55,874,250 - 55,922,979 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	55,872,607 - 55,936,516 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	58,478,654 - 58,496,156 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNGA3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	2,039,281 - 2,124,527 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	2,096,232 - 2,123,231 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	169,587,189 - 169,645,494 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cnga3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	3,458,991 - 3,483,003 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	3,458,997 - 3,482,697 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Cnga3
3044 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	515
Count of miRNA genes:	379
Interacting mature miRNAs:	429
Transcripts:	ENSMUST00000027288, ENSMUST00000134238
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1301011	Cplaq4_m	circadian period of locomotor activity 4 (mouse)			Not determined		1	9673442	43673601	Mouse
1357524	W6q14_m	weight 6 weeks QTL 14 (mouse)			Not determined		1	34760138	73976915	Mouse
1301073	Orch5_m	autoimmune orchitis resistance 5 (mouse)			Not determined		1	19065351	53065454	Mouse
1357651	Lgq5_m	late growth QTL 5 (mouse)			Not determined		1	34760138	73976915	Mouse
11100001	Col4a1m1_m	collagen, type IV, alpha 1 modifier 1 (mouse)					1	25550191	62946882	Mouse
13824984	Twq5_m	testis weight QTL 5 (mouse)					1	3069992	184732197	Mouse
1301471	Obq2_m	obesity QTL 2 (mouse)			Not determined		1	3941620	37941887	Mouse
12880407	V125Dq2_m	vitamin D active form serum level QTL 2 (mouse)					1	19339081	53339081	Mouse
1357824	Estoq4_m	embryo survival total QTL 4 (mouse)			Not determined		1	34760138	73976915	Mouse
1357506	W10q6_m	weight 10 weeks QTL 6 (mouse)			Not determined		1	34760138	73976915	Mouse
39128207	Lwq16_m	liver weight QTL 16 (mouse)					1	34760138	73976915	Mouse
10043970	Obq23_m	obesity QTL 23 (mouse)			Not determined		1	5012665	39012665	Mouse
1558860	W10q7_m	weight 10 weeks QTL 7 (mouse)			Not determined		1	34760138	150193871	Mouse
12880409	V125Dq1_m	vitamin D active form serum level QTL 1 (mouse)					1	26039160	60039160	Mouse
4142433	Hbnr1_m	Heligmosomoides bakeri nematode resistance 1 (mouse)			Not determined			25550191	58273271	Mouse
1357488	Splq3_m	spleen weight QTL 3 (mouse)			Not determined		1	34760138	150193871	Mouse
15092046	Wngrme1_m	week nine growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
15092044	Wtgrme1_m	week ten growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
1301240	Sluc15_m	susceptibility to lung cancer 15 (mouse)			Not determined		1	19065351	53065454	Mouse
1357759	W3q12_m	weight 3 weeks QTL 12 (mouse)			Not determined		1	34760138	73976915	Mouse
14700685	Civq2_m	cerebral infarct volume QTL 2 (mouse)					1	11340482	45340482	Mouse
1357753	Kidq2_m	kidney weight QTL 2 (mouse)			Not determined		1	34760138	150193871	Mouse
1301756	Pgia1_m	proteoglycan induced arthritis 1 (mouse)			Not determined		1	19065351	53065454	Mouse
15092055	Lgrme1_m	late growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
15092050	Wsegrme1_m	week seven growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
15092051	Wegrme1_m	week eight growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
15092048	Wsigrme1_m	week six growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
1357475	w3q13_m	weight 3 weeks QTL 13 (mouse)			Not determined		1	23109591	73976915	Mouse

PMC22124P1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	37,261,058 - 37,261,341	UniSTS	GRCm38
MGSCv37	1	37,317,903 - 37,318,186	UniSTS	GRCm37
Celera	1	37,041,119 - 37,041,402	UniSTS
Cytogenetic Map	1	B	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001282010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001420073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001420074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_009918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017313745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017313748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036157115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC133096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ238239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ238240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ238241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ243933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC035272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC049145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ167467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MN381859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000027288 ⟹ ENSMUSP00000027288

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	37,258,286 - 37,302,465 (+)	Ensembl
GRCm38.p6 Ensembl	1	37,219,205 - 37,263,384 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000191981 ⟹ ENSMUSP00000142235

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	37,253,515 - 37,281,021 (+)	Ensembl
GRCm38.p6 Ensembl	1	37,214,434 - 37,241,940 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000194195 ⟹ ENSMUSP00000142075

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	37,257,460 - 37,301,265 (+)	Ensembl
GRCm38.p6 Ensembl	1	37,218,379 - 37,262,184 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000195272 ⟹ ENSMUSP00000142175

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	37,257,460 - 37,301,265 (+)	Ensembl
GRCm38.p6 Ensembl	1	37,218,379 - 37,262,184 (+)	Ensembl

RefSeq Acc Id:

NM_001282010 ⟹ NP_001268939

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,257,359 - 37,302,465 (+)	NCBI
GRCm38	1	37,218,278 - 37,263,384 (+)	NCBI
Celera	1	36,994,446 - 37,043,436 (+)	NCBI

Sequence:

show sequence

AGAGTTACTCCGCCTGCTGGACCCAGAAGACCATGCCGGAGACAGGGAGCTGAAGAGCAGGAGAAAGAAGTCCGGGCTGTTGCCCAGAACAGAGAGAGAGAGAGAGAGAGGAAGGAGTCGCTCTCCCA
GATCCAGGCGCACCAAGAAGCCCAAACTTTGACAGGAAGCAAGCGTCTTCCTAGGCACGGCTTGCCTCCTTCAAGAAGGAGACTTAAGCAGAGCGGTGTGGAGTCTGCAGCCTTCGATAAGCAGGCAT
TGGTGAAACAGCCTCACAGCAGGCCACCCCGGGGCTGAATGTGACCTGTGCAGAGATGGCAAAGGTGAACACCCAGTGTTCACAGCCCTCCCCGACCCAACTTTCAATAAAGAATGCGGACAGAGATC
TCGACCACGTAGAGAACGGCCTGGGCAGGTCTCACTCACCATGTGAGGAGACATCTTCCACACTGCAGCAAGGGATCGCCATGGAGACCCGAGGACTGGCTGGATCCGCACGGAGCGTAGTCACAAGC
CAGGGACCAGCCAGGGTGTCACGCCTCATCATCTCGATTCGTGCGTGGGCCTCCAGGCACTTACACGATGAAGACCAGACACCTGACTCCTTTTTGGATCGATTTCATGGATCTGAGCTTAAGGAAGT
CTCCACCCGGGAAAGCAATGCCCAGCCCAACCCAGGAGAACAGAAGCCACCAGACGGAGGGGAAGGCAGGAAGGAGGAGCCCATTGTGGTGGACCCCTCCAGCAACATCTACTACCGCTGGCTGACTG
CCATCGCGCTCCCAGTCTTCTATAACTGGTGTCTACTTGTATGCAGGGCCTGTTTTGATGAGCTACAATCAGAGCACCTGACGCTGTGGCTGGTCTTGGACTACTCTGCAGATGTCCTTTATGTTTTA
GACATGCTGGTTCGAGCCCGGACAGGTTTCCTTGAGCAAGGCCTAATGGTCAGAGATACCAAGAGGCTGTGGAAACATTACACAAAGACCTTGCACTTCAAGCTGGACATCCTGTCTCTCATCCCCAC
AGACCTGGCTTATTTAAAGTTGGGCGTGAACTACCCAGAACTGAGGTTCAACCGCCTCCTGAAGTTCTCTCGGCTCTTTGAATTCTTTGACCGCACAGAGACAAGGACCAACTACCCCAACGTGTTCA
GGATAGGGAACTTGGTCCTTTACACACTCATCATCATCCACTGGAATGCCTGCATCTACTTTGCCATTTCCAAGTTCATTGGTTTTGGGACAGACTCCTGGGTCTATCCAAACACCTCCAAGCCGGAG
TATGCACGACTCTCCCGGAAGTACATTTACAGTCTCTACTGGTCCACCCTGACCCTGACCACCATTGGTGAGACCCCACCCCCCGTGAAAGATGAAGAGTATCTCTTTGTGGTCATCGACTTCCTGGT
GGGTATCCTGATCTTTGCCACCATAGTGGGCAACGTAGGCTCCATGATTTCCAACATGAACGCTCCCCGGGTAGAGTTCCAGGCTAAGATCGACTCCGTCAAGCAGTACATGCAGTTCCGGAAGGTAA
CCAAGGACTTGGAGACTCGGGTTATCCGGTGGTTTGACTATCTGTGGGCCAACAGGAAGACGGTGGATGAAAAGGAAGTGCTCAAAAACCTCCCGGACAAGCTGAAGGCTGAGATCGCCATCAACGTG
CACCTGGACACGCTGAAGAAGGTCCGAATCTTCCAGGACTGCGAGGCGGGGCTGCTGGTGGAGCTGGTGCTGAAGCTCCGCCCCACTGTGTTCAGCCCCGGGGACTACATATGCAAAAAGGGGGACAT
TGGAAGAGAGATGTACATCATCAAGGAGGGCAAGCTGGCTGTGGTGGCTGATGACGGGGTCACCCAGTTTGTGGTCCTCAGTGACGGCAGTTACTTTGGGGAGATTAGCATCTTAAACATTAAGGGGA
GCAAGTCTGGGAACCGCAGGACGGCCAACATCAGGAGTATCGGCTACTCAGACCTGTTCTGCCTCTCCAAGGATGACCTAATGGAAGCCCTCACCGAGTACCCAGACGCTAAGAGGGCTCTGGAGGAA
AAGGGCCGTCAGATTCTGATGAAGGACAACCTAATTGATGAGGACCTAGTCGCGGCCAGGGTAGATACCAGGGACGTTGAGGAGAAGGTGGAGTACCTGGAGTCGTCCCTGGACATCCTGCAGACGAG
GTTTGCCCGACTCCTGGCTGAGTACAGTGCCTCCCAGATGAAGCTGAAACAGCGGCTCACTCGGCTGGAGAGCCAGATGAACAGGAGGTGTTGTGGCTTCTCACCTGACAGGGAGAATTCCGAGGATG
CTTCAAAGACTGACTGAAAATGCAGGTGGCTCTGCCTCCTGCTCCCCCCCCCCCCCCCCGGGGCCAGCTCTCTGGGCGACACTATATAGCCTCGGGGTAAAGGGTTTGGCTGTGGTTTCGCCTCAGTG
CTACTCATCCTTTGGGAGTGGTGTGACAGCAAGGAAGAGCCTTAGTTTCCTCTCCTATGAAATGGGACTCATGGCTGTCGGCCCCAGAAGTTCCAGACTATCATGAGGTGGCGAAGGTTGTGGCTTTG
GAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAATGTTGTTAGTTATGTTGGCATATGGGTATGTTCAGTTGTCGGCGGAGGTCAGGAGAGGGCGTTGCATCCCCTG
GGCTGGAGTTACCTGCTGTTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGCTGTGATGAAATATCATAACCAATGCAAGTTAGGAAGAAAAGGTTTTTTTTTCGG
CTTACACTCCACATCATAGTCCATCATTGAAGGAAGTCAGGGCAGGAACTCAAACTGGGCAGGAAGCTGGAGGCAGGAGCTGATGCAGAGGCCATAAAGGGGAGCTGCTTACTGGTTTGCTCTTCTTA
GCTTGCTAAGCCTGCTTTCTTATAGAACCCAGAACCACCAGCCCGGGAGTAGTCCTACTTGCAATGGGCTAGGCCCTCCTTCATCTATCATTAGTTAAGGAAATGCTCCACGGACTTGCCTACAGCTG
GATCTTAGGGAGGCATTTTCTCAGTCATCCTCTCAGATGACTCTAACTTGTGTCAAGTTGACATAAAAATCCGACCAGCACAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCT
GCTCTGTTACCCAGTCCAGCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTCCAAGTAGCTGGGACCACAGGCACACTCCACTGTTTCCAACCCAGATAAGTTTTGTTTTGTTTTGTT
TTGTTTTGTTTTGTTTTGTTTTAATGAAATCCATGGGAATGTTTAAGCCCCTTATCCTAGCTATGTTATAAATGGATGTCTTACGGGGCTGGTGAGATAACTCAGTGGTTAAGAGCACTAGCTGCTCT
TCCAGAGGTCATGAGTTCAATTCCCAGCAACCACAAGGTGGCTCACAACCATCTATAGGGGGATCTGATGCCCTCTTCGGGCAGGTGGATATATGTGCAAAAGAGCACTCATACATTAAATAATAAAT
ACAATTAAAGATATATATAAATGGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001420073 ⟹ NP_001407002

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,258,277 - 37,302,465 (+)	NCBI

RefSeq Acc Id:

NM_001420074 ⟹ NP_001407003

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,258,277 - 37,302,465 (+)	NCBI

RefSeq Acc Id:

NM_009918 ⟹ NP_034048

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,258,277 - 37,302,465 (+)	NCBI
GRCm38	1	37,219,205 - 37,263,384 (+)	NCBI
MGSCv37	1	37,276,106 - 37,320,229 (+)	RGD
Celera	1	36,994,446 - 37,043,436 (+)	NCBI
cM Map	1		ENTREZGENE

Sequence:

show sequence

TATGCACTCCCTCTTGTCTTCCACCCCCTTCTCCACACCCAATCCACCCTTGACCACCTCAGGC
TGCCAATCTACTGGCTACTCTGGGCTGGGACTGTGGAGCTAGGAAGTGGGAAAAGCTGATCCAGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCTCATCATCTCCC
TCTCTGATGCTGTTGGGACTTTGATCTTCAGAAGCAAGCGTCTTCCTAGGCACGGCTTGCCTCCTTCAAGAAGGAGACTTAAGCAGAGCGGTGTGGAGTCTGCAGCCTTCGATAAGCAGGCATTGGTG
AAACAGCCTCACAGCAGGCCACCCCGGGGCTGAATGTGACCTGTGCAGAGATGGCAAAGGTGAACACCCAGTGTTCACAGCCCTCCCCGACCCAACTTTCAATAAAGAATGCGGACAGAGATCTCGAC
CACGTAGAGAACGGCCTGGGCAGGGTGTCACGCCTCATCATCTCGATTCGTGCGTGGGCCTCCAGGCACTTACACGATGAAGACCAGACACCTGACTCCTTTTTGGATCGATTTCATGGATCTGAGCT
TAAGGAAGTCTCCACCCGGGAAAGCAATGCCCAGCCCAACCCAGGAGAACAGAAGCCACCAGACGGAGGGGAAGGCAGGAAGGAGGAGCCCATTGTGGTGGACCCCTCCAGCAACATCTACTACCGCT
GGCTGACTGCCATCGCGCTCCCAGTCTTCTATAACTGGTGTCTACTTGTATGCAGGGCCTGTTTTGATGAGCTACAATCAGAGCACCTGACGCTGTGGCTGGTCTTGGACTACTCTGCAGATGTCCTT
TATGTTTTAGACATGCTGGTTCGAGCCCGGACAGGTTTCCTTGAGCAAGGCCTAATGGTCAGAGATACCAAGAGGCTGTGGAAACATTACACAAAGACCTTGCACTTCAAGCTGGACATCCTGTCTCT
CATCCCCACAGACCTGGCTTATTTAAAGTTGGGCGTGAACTACCCAGAACTGAGGTTCAACCGCCTCCTGAAGTTCTCTCGGCTCTTTGAATTCTTTGACCGCACAGAGACAAGGACCAACTACCCCA
ACGTGTTCAGGATAGGGAACTTGGTCCTTTACACACTCATCATCATCCACTGGAATGCCTGCATCTACTTTGCCATTTCCAAGTTCATTGGTTTTGGGACAGACTCCTGGGTCTATCCAAACACCTCC
AAGCCGGAGTATGCACGACTCTCCCGGAAGTACATTTACAGTCTCTACTGGTCCACCCTGACCCTGACCACCATTGGTGAGACCCCACCCCCCGTGAAAGATGAAGAGTATCTCTTTGTGGTCATCGA
CTTCCTGGTGGGTATCCTGATCTTTGCCACCATAGTGGGCAACGTAGGCTCCATGATTTCCAACATGAACGCTCCCCGGGTAGAGTTCCAGGCTAAGATCGACTCCGTCAAGCAGTACATGCAGTTCC
GGAAGGTAACCAAGGACTTGGAGACTCGGGTTATCCGGTGGTTTGACTATCTGTGGGCCAACAGGAAGACGGTGGATGAAAAGGAAGTGCTCAAAAACCTCCCGGACAAGCTGAAGGCTGAGATCGCC
ATCAACGTGCACCTGGACACGCTGAAGAAGGTCCGAATCTTCCAGGACTGCGAGGCGGGGCTGCTGGTGGAGCTGGTGCTGAAGCTCCGCCCCACTGTGTTCAGCCCCGGGGACTACATATGCAAAAA
GGGGGACATTGGAAGAGAGATGTACATCATCAAGGAGGGCAAGCTGGCTGTGGTGGCTGATGACGGGGTCACCCAGTTTGTGGTCCTCAGTGACGGCAGTTACTTTGGGGAGATTAGCATCTTAAACA
TTAAGGGGAGCAAGTCTGGGAACCGCAGGACGGCCAACATCAGGAGTATCGGCTACTCAGACCTGTTCTGCCTCTCCAAGGATGACCTAATGGAAGCCCTCACCGAGTACCCAGACGCTAAGAGGGCT
CTGGAGGAAAAGGGCCGTCAGATTCTGATGAAGGACAACCTAATTGATGAGGACCTAGTCGCGGCCAGGGTAGATACCAGGGACGTTGAGGAGAAGGTGGAGTACCTGGAGTCGTCCCTGGACATCCT
GCAGACGAGGTTTGCCCGACTCCTGGCTGAGTACAGTGCCTCCCAGATGAAGCTGAAACAGCGGCTCACTCGGCTGGAGAGCCAGATGAACAGGAGGTGTTGTGGCTTCTCACCTGACAGGGAGAATT
CCGAGGATGCTTCAAAGACTGACTGAAAATGCAGGTGGCTCTGCCTCCTGCTCCCCCCCCCCCCCCCCGGGGCCAGCTCTCTGGGCGACACTATATAGCCTCGGGGTAAAGGGTTTGGCTGTGGTTTC
GCCTCAGTGCTACTCATCCTTTGGGAGTGGTGTGACAGCAAGGAAGAGCCTTAGTTTCCTCTCCTATGAAATGGGACTCATGGCTGTCGGCCCCAGAAGTTCCAGACTATCATGAGGTGGCGAAGGTT
GTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAATGTTGTTAGTTATGTTGGCATATGGGTATGTTCAGTTGTCGGCGGAGGTCAGGAGAGGGCGTTG
CATCCCCTGGGCTGGAGTTACCTGCTGTTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGCTGTGATGAAATATCATAACCAATGCAAGTTAGGAAGAAAAGGTTT
TTTTTTCGGCTTACACTCCACATCATAGTCCATCATTGAAGGAAGTCAGGGCAGGAACTCAAACTGGGCAGGAAGCTGGAGGCAGGAGCTGATGCAGAGGCCATAAAGGGGAGCTGCTTACTGGTTTG
CTCTTCTTAGCTTGCTAAGCCTGCTTTCTTATAGAACCCAGAACCACCAGCCCGGGAGTAGTCCTACTTGCAATGGGCTAGGCCCTCCTTCATCTATCATTAGTTAAGGAAATGCTCCACGGACTTGC
CTACAGCTGGATCTTAGGGAGGCATTTTCTCAGTCATCCTCTCAGATGACTCTAACTTGTGTCAAGTTGACATAAAAATCCGACCAGCACAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGT
GAAGGTCCTGCTCTGTTACCCAGTCCAGCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTCCAAGTAGCTGGGACCACAGGCACACTCCACTGTTTCCAACCCAGATAAGTTTTGTTT
TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTAATGAAATCCATGGGAATGTTTAAGCCCCTTATCCTAGCTATGTTATAAATGGATGTCTTACGGGGCTGGTGAGATAACTCAGTGGTTAAGAGCACT
AGCTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACAAGGTGGCTCACAACCATCTATAGGGGGATCTGATGCCCTCTTCGGGCAGGTGGATATATGTGCAAAAGAGCACTCATACATTAA
ATAATAAATACAATTAAAGATATATATAAATGGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017313745 ⟹ XP_017169234

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,257,317 - 37,302,465 (+)	NCBI
GRCm38	1	37,218,241 - 37,262,617 (+)	NCBI

Sequence:

show sequence

TTCCAGGCATCTCAGTTGACTCTCTCAGTCAAAGGAAGCAACAGAGTTACTCCGCCTGCTGGAC
CCAGAAGACCATGCCGGAGACAGGGAGCTGAAGAGCAGGAGAAAGAAGTCCGGGCTGTTGCCCAGAACAGAGAGAGAGAGAGAGAGAGGAAGGAGTCGCTCTCCCAGATCCAGGCGCACCAAGAAGCC
CAAACTTTGACAGGAAGCAAGCGTCTTCCTAGGCACGGCTTGCCTCCTTCAAGAAGGAGACTTAAGCAGAGCGGTGTGGAGTCTGCAGCCTTCGATAAGCAGGCATTGGTGAAACAGCCTCACAGCAG
GCCACCCCGGGGCTGAATGTGACCTGTGCAGAGATGGCAAAGGTGAACACCCAGTGTTCACAGCCCTCCCCGACCCAACTTTCAATAAAGAATGCGGACAGAGATCTCGACCACGTAGAGAACGGCCT
GGGCAGGGTGTCACGCCTCATCATCTCGATTCGTGCGTGGGCCTCCAGGCACTTACACGATGAAGACCAGACACCTGACTCCTTTTTGGATCGATTTCATGGATCTGAGCTTAAGGAAGTCTCCACCC
GGGAAAGCAATGCCCAGCCCAACCCAGGAGAACAGAAGCCACCAGACGGAGGGGAAGGCAGGAAGGAGGAGCCCATTGTGGTGGACCCCTCCAGCAACATCTACTACCGCTGGCTGACTGCCATCGCG
CTCCCAGTCTTCTATAACTGGTGTCTACTTGTATGCAGGGCCTGTTTTGATGAGCTACAATCAGAGCACCTGACGCTGTGGCTGGTCTTGGACTACTCTGCAGATGTCCTTTATGTTTTAGACATGCT
GGTTCGAGCCCGGACAGGTTTCCTTGAGCAAGGCCTAATGGTCAGAGATACCAAGAGGCTGTGGAAACATTACACAAAGACCTTGCACTTCAAGCTGGACATCCTGTCTCTCATCCCCACAGACCTGG
CTTATTTAAAGTTGGGCGTGAACTACCCAGAACTGAGGTTCAACCGCCTCCTGAAGTTCTCTCGGCTCTTTGAATTCTTTGACCGCACAGAGACAAGGACCAACTACCCCAACGTGTTCAGGATAGGG
AACTTGGTCCTTTACACACTCATCATCATCCACTGGAATGCCTGCATCTACTTTGCCATTTCCAAGTTCATTGGTTTTGGGACAGACTCCTGGGTCTATCCAAACACCTCCAAGCCGGAGTATGCACG
ACTCTCCCGGAAGTACATTTACAGTCTCTACTGGTCCACCCTGACCCTGACCACCATTGGTGAGACCCCACCCCCCGTGAAAGATGAAGAGTATCTCTTTGTGGTCATCGACTTCCTGGTGGGTATCC
TGATCTTTGCCACCATAGTGGGCAACGTAGGCTCCATGATTTCCAACATGAACGCTCCCCGGGTAGAGTTCCAGGCTAAGATCGACTCCGTCAAGCAGTACATGCAGTTCCGGAAGGTAACCAAGGAC
TTGGAGACTCGGGTTATCCGGTGGTTTGACTATCTGTGGGCCAACAGGAAGACGGTGGATGAAAAGGAAGTGCTCAAAAACCTCCCGGACAAGCTGAAGGCTGAGATCGCCATCAACGTGCACCTGGA
CACGCTGAAGAAGGTCCGAATCTTCCAGGACTGCGAGGCGGGGCTGCTGGTGGAGCTGGTGCTGAAGCTCCGCCCCACTGTGTTCAGCCCCGGGGACTACATATGCAAAAAGGGGGACATTGGAAGAG
AGATGTACATCATCAAGGAGGGCAAGCTGGCTGTGGTGGCTGATGACGGGGTCACCCAGTTTGTGGTCCTCAGTGACGGCAGTTACTTTGGGGAGATTAGCATCTTAAACATTAAGGGGAGCAAGTCT
GGGAACCGCAGGACGGCCAACATCAGGAGTATCGGCTACTCAGACCTGTTCTGCCTCTCCAAGGATGACCTAATGGAAGCCCTCACCGAGTACCCAGACGCTAAGAGGGCTCTGGAGGAAAAGGGCCG
TCAGATTCTGATGAAGGACAACCTAATTGATGAGGACCTAGTCGCGGCCAGGGTAGATACCAGGGACGTTGAGGAGAAGGTGGAGTACCTGGAGTCGTCCCTGGACATCCTGCAGACGAGGTTTGCCC
GACTCCTGGCTGAGTACAGTGCCTCCCAGATGAAGCTGAAACAGCGGCTCACTCGGCTGGAGAGCCAGATGAACAGGAGGTGTTGTGGCTTCTCACCTGACAGGGAGAATTCCGAGGATGCTTCAAAG
ACTGACTGAAAATGCAGGTGGCTCTGCCTCCTGCTCCCCCCCCCCCCCCCCGGGGCCAGCTCTCTGGGCGACACTATATAGCCTCGGGGTAAAGGGTTTGGCTGTGGTTTCGCCTCAGTGCTACTCAT
CCTTTGGGAGTGGTGTGACAGCAAGGAAGAGCCTTAGTTTCCTCTCCTATGAAATGGGACTCATGGCTGTCGGCCCCAGAAGTTCCAGACTATCATGAGGTGGCGAAGGTTGTGGCTTTGGAAAGCGT
GAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAATGTTGTTAGTTATGTTGGCATATGGGTATGTTCAGTTGTCGGCGGAGGTCAGGAGAGGGCGTTGCATCCCCTGGGCTGGAG
TTACCTGCTGTTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGCTGTGATGAAATATCATAACCAATGCAAGTTAGGAAGAAAAGGTTTTTTTTTCGGCTTACACT
CCACATCATAGTCCATCATTGAAGGAAGTCAGGGCAGGAACTCAAACTGGGCAGGAAGCTGGAGGCAGGAGCTGATGCAGAGGCCATAAAGGGGAGCTGCTTACTGGTTTGCTCTTCTTAGCTTGCTA
AGCCTGCTTTCTTATAGAACCCAGAACCACCAGCCCGGGAGTAGTCCTACTTGCAATGGGCTAGGCCCTCCTTCATCTATCATTAGTTAAGGAAATGCTCCACGGACTTGCCTACAGCTGGATCTTAG
GGAGGCATTTTCTCAGTCATCCTCTCAGATGACTCTAACTTGTGTCAAGTTGACATAAAAATCCGACCAGCACAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTGTT
ACCCAGTCCAGCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTCCAAGTAGCTGGGACCACAGGCACACTCCACTGTTTCCAACCCAGATAAGTTTTGTTTTGTTTTGTTTTGTTTTG
TTTTGTTTTGTTTTAATGAAATCCATGGGAATGTTTAAGCCCCTTATCCTAGCTATGTTATAAATGGATGTCTTACGGGGCTGGTGAGATAACTCAGTGGTTAAGAGCACTAGCTGCTCTTCCAGAGG
TCATGAGTTCAATTCCCAGCAACCACAAGGTGGCTCACAACCATCTATAGGGGGATCTGATGCCCTCTTCGGGCAGGTGGATATATGTGCAAAAGAGCACTCATACATTAAATAATAAATACAATTAA
AGATATATATAAATGGA

hide sequence

RefSeq Acc Id:

XM_017313748 ⟹ XP_017169237

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,257,317 - 37,302,465 (+)	NCBI
GRCm38	1	37,218,241 - 37,263,384 (+)	NCBI

Sequence:

show sequence

TTCCAGGCATCTCAGTTGACTCTCTCAGTCAAAGGAAGCAACAGAGTTACTCCGCCTGCTGGAC
CCAGAAGACCATGCCGGAGACAGGGAGCTGAAGAGCAGGAGAAAGAAGTCCGGGCTGTTGCCCAGAACAGAGAGAGAGAGAGAGAGAGGAAGGAGTCGCTCTCCCAGATCCAGGCGCACCAAGAAGCC
CAAACTTTGACAGGAAGCAAGCGTCTTCCTAGGCACGGCTTGCCTCCTTCAAGAAGGAGACTTAAGCAGAGCGGTGTGGAGTCTGCAGCCTTCGATAAGCAGGCATTGGTGAAACAGCCTCACAGCAG
GCCACCCCGGGGCTGAATGTGACCTGTGCAGAGATGGCAAAGGTGAACACCCAGTGTTCACAGCCCTCCCCGACCCAACTTTCAATAAAGAATGCGGACAGAGATCTCGACCACGTAGAGAACGGCCT
GGGCAGGGTGTCACGCCTCATCATCTCGATTCGTGCGTGGGCCTCCAGGCACTTACACGATGAAGACCAGACACCTGACTCCTTTTTGGATCGATTTCATGGATCTGAGCTTAAGGAAGTCTCCACCC
GGGAAAGCAATGCCCAGCCCAACCCAGGAGAACAGAAGCCACCAGACGGAGGGGAAGGGAAGGAGGAGCCCATTGTGGTGGACCCCTCCAGCAACATCTACTACCGCTGGCTGACTGCCATCGCGCTC
CCAGTCTTCTATAACTGGTGTCTACTTGTATGCAGGGCCTGTTTTGATGAGCTACAATCAGAGCACCTGACGCTGTGGCTGGTCTTGGACTACTCTGCAGATGTCCTTTATGTTTTAGACATGCTGGT
TCGAGCCCGGACAGGTTTCCTTGAGCAAGGCCTAATGGTCAGAGATACCAAGAGGCTGTGGAAACATTACACAAAGACCTTGCACTTCAAGCTGGACATCCTGTCTCTCATCCCCACAGACCTGGCTT
ATTTAAAGTTGGGCGTGAACTACCCAGAACTGAGGTTCAACCGCCTCCTGAAGTTCTCTCGGCTCTTTGAATTCTTTGACCGCACAGAGACAAGGACCAACTACCCCAACGTGTTCAGGATAGGGAAC
TTGGTCCTTTACACACTCATCATCATCCACTGGAATGCCTGCATCTACTTTGCCATTTCCAAGTTCATTGGTTTTGGGACAGACTCCTGGGTCTATCCAAACACCTCCAAGCCGGAGTATGCACGACT
CTCCCGGAAGTACATTTACAGTCTCTACTGGTCCACCCTGACCCTGACCACCATTGGTGAGACCCCACCCCCCGTGAAAGATGAAGAGTATCTCTTTGTGGTCATCGACTTCCTGGTGGGTATCCTGA
TCTTTGCCACCATAGTGGGCAACGTAGGCTCCATGATTTCCAACATGAACGCTCCCCGGGTAGAGTTCCAGGCTAAGATCGACTCCGTCAAGCAGTACATGCAGTTCCGGAAGGTAACCAAGGACTTG
GAGACTCGGGTTATCCGGTGGTTTGACTATCTGTGGGCCAACAGGAAGACGGTGGATGAAAAGGAAGTGCTCAAAAACCTCCCGGACAAGCTGAAGGCTGAGATCGCCATCAACGTGCACCTGGACAC
GCTGAAGAAGGTCCGAATCTTCCAGGACTGCGAGGCGGGGCTGCTGGTGGAGCTGGTGCTGAAGCTCCGCCCCACTGTGTTCAGCCCCGGGGACTACATATGCAAAAAGGGGGACATTGGAAGAGAGA
TGTACATCATCAAGGAGGGCAAGCTGGCTGTGGTGGCTGATGACGGGGTCACCCAGTTTGTGGTCCTCAGTGACGGCAGTTACTTTGGGGAGATTAGCATCTTAAACATTAAGGGGAGCAAGTCTGGG
AACCGCAGGACGGCCAACATCAGGAGTATCGGCTACTCAGACCTGTTCTGCCTCTCCAAGGATGACCTAATGGAAGCCCTCACCGAGTACCCAGACGCTAAGAGGGCTCTGGAGGAAAAGGGCCGTCA
GATTCTGATGAAGGACAACCTAATTGATGAGGACCTAGTCGCGGCCAGGGTAGATACCAGGGACGTTGAGGAGAAGGTGGAGTACCTGGAGTCGTCCCTGGACATCCTGCAGACGAGGTTTGCCCGAC
TCCTGGCTGAGTACAGTGCCTCCCAGATGAAGCTGAAACAGCGGCTCACTCGGCTGGAGAGCCAGATGAACAGGAGGTGTTGTGGCTTCTCACCTGACAGGGAGAATTCCGAGGATGCTTCAAAGACT
GACTGAAAATGCAGGTGGCTCTGCCTCCTGCTCCCCCCCCCCCCCCCCGGGGCCAGCTCTCTGGGCGACACTATATAGCCTCGGGGTAAAGGGTTTGGCTGTGGTTTCGCCTCAGTGCTACTCATCCT
TTGGGAGTGGTGTGACAGCAAGGAAGAGCCTTAGTTTCCTCTCCTATGAAATGGGACTCATGGCTGTCGGCCCCAGAAGTTCCAGACTATCATGAGGTGGCGAAGGTTGTGGCTTTGGAAAGCGTGAA
GAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAATGTTGTTAGTTATGTTGGCATATGGGTATGTTCAGTTGTCGGCGGAGGTCAGGAGAGGGCGTTGCATCCCCTGGGCTGGAGTTA
CCTGCTGTTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGCTGTGATGAAATATCATAACCAATGCAAGTTAGGAAGAAAAGGTTTTTTTTTCGGCTTACACTCCA
CATCATAGTCCATCATTGAAGGAAGTCAGGGCAGGAACTCAAACTGGGCAGGAAGCTGGAGGCAGGAGCTGATGCAGAGGCCATAAAGGGGAGCTGCTTACTGGTTTGCTCTTCTTAGCTTGCTAAGC
CTGCTTTCTTATAGAACCCAGAACCACCAGCCCGGGAGTAGTCCTACTTGCAATGGGCTAGGCCCTCCTTCATCTATCATTAGTTAAGGAAATGCTCCACGGACTTGCCTACAGCTGGATCTTAGGGA
GGCATTTTCTCAGTCATCCTCTCAGATGACTCTAACTTGTGTCAAGTTGACATAAAAATCCGACCAGCACAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTGTTACC
CAGTCCAGCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTCCAAGTAGCTGGGACCACAGGCACACTCCACTGTTTCCAACCCAGATAAGTTTTGTTTTGTTTTGTTTTGTTTTGTTT
TGTTTTGTTTTAATGAAATCCATGGGAATGTTTAAGCCCCTTATCCTAGCTATGTTATAAATGGATGTCTTACGGGGCTGGTGAGATAACTCAGTGGTTAAGAGCACTAGCTGCTCTTCCAGAGGTCA
TGAGTTCAATTCCCAGCAACCACAAGGTGGCTCACAACCATCTATAGGGGGATCTGATGCCCTCTTCGGGCAGGTGGATATATGTGCAAAAGAGCACTCATACATTAAATAATAAATACAATTAAAGA
TATATATAAATGGA

hide sequence

RefSeq Acc Id:

XM_036157115 ⟹ XP_036013008

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,269,701 - 37,302,465 (+)	NCBI

Sequence:

show sequence

CCTTCCAGAGAGCCTGCGCTGGCCTGTTTGGGTGACCCTAACCTCAGAGGATTATCTTGAGGCT
GGAAGACCTCTCCAGGAGGGATAAACACGCCACTCTCAGCAGCTGTGCTTCTGTACTCGCTTCCTCTTCTCCTCAGCCACAGGGACACCTTCCCCTGTTAGCTGCAGGACAGCCTTGTGTCAATTGCG
GCATAGGCTGCAATGGAGGTTTGAGCTTATTTTGGCTAGACATGCTATGCTACTTCACATCTCTGAGGTTGGTATGGCCATCTATTGGAAGGGATAACGGCTACATAAAGATCATTGTAATCATTAAA
TGAGCAGGCCACCCCGGGGCTGAATGTGACCTGTGCAGAGATGGCAAAGGTGAACACCCAGTGTTCACAGCCCTCCCCGACCCAACTTTCAATAAAGAATGCGGACAGAGATCTCGACCACGTAGAGA
ACGGCCTGGGCAGGGTGTCACGCCTCATCATCTCGATTCGTGCGTGGGCCTCCAGGCACTTACACGATGAAGACCAGACACCTGACTCCTTTTTGGATCGATTTCATGGATCTGAGCTTAAGGAAGTC
TCCACCCGGGAAAGCAATGCCCAGCCCAACCCAGGAGAACAGAAGCCACCAGACGGAGGGGAAGGCAGGAAGGAGGAGCCCATTGTGGTGGACCCCTCCAGCAACATCTACTACCGCTGGCTGACTGC
CATCGCGCTCCCAGTCTTCTATAACTGGTGTCTACTTGTATGCAGGGCCTGTTTTGATGAGCTACAATCAGAGCACCTGACGCTGTGGCTGGTCTTGGACTACTCTGCAGATGTCCTTTATGTTTTAG
ACATGCTGGTTCGAGCCCGGACAGGTTTCCTTGAGCAAGGCCTAATGGTCAGAGATACCAAGAGGCTGTGGAAACATTACACAAAGACCTTGCACTTCAAGCTGGACATCCTGTCTCTCATCCCCACA
GACCTGGCTTATTTAAAGTTGGGCGTGAACTACCCAGAACTGAGGTTCAACCGCCTCCTGAAGTTCTCTCGGCTCTTTGAATTCTTTGACCGCACAGAGACAAGGACCAACTACCCCAACGTGTTCAG
GATAGGGAACTTGGTCCTTTACACACTCATCATCATCCACTGGAATGCCTGCATCTACTTTGCCATTTCCAAGTTCATTGGTTTTGGGACAGACTCCTGGGTCTATCCAAACACCTCCAAGCCGGAGT
ATGCACGACTCTCCCGGAAGTACATTTACAGTCTCTACTGGTCCACCCTGACCCTGACCACCATTGGTGAGACCCCACCCCCCGTGAAAGATGAAGAGTATCTCTTTGTGGTCATCGACTTCCTGGTG
GGTATCCTGATCTTTGCCACCATAGTGGGCAACGTAGGCTCCATGATTTCCAACATGAACGCTCCCCGGGTAGAGTTCCAGGCTAAGATCGACTCCGTCAAGCAGTACATGCAGTTCCGGAAGGTAAC
CAAGGACTTGGAGACTCGGGTTATCCGGTGGTTTGACTATCTGTGGGCCAACAGGAAGACGGTGGATGAAAAGGAAGTGCTCAAAAACCTCCCGGACAAGCTGAAGGCTGAGATCGCCATCAACGTGC
ACCTGGACACGCTGAAGAAGGTCCGAATCTTCCAGGACTGCGAGGCGGGGCTGCTGGTGGAGCTGGTGCTGAAGCTCCGCCCCACTGTGTTCAGCCCCGGGGACTACATATGCAAAAAGGGGGACATT
GGAAGAGAGATGTACATCATCAAGGAGGGCAAGCTGGCTGTGGTGGCTGATGACGGGGTCACCCAGTTTGTGGTCCTCAGTGACGGCAGTTACTTTGGGGAGATTAGCATCTTAAACATTAAGGGGAG
CAAGTCTGGGAACCGCAGGACGGCCAACATCAGGAGTATCGGCTACTCAGACCTGTTCTGCCTCTCCAAGGATGACCTAATGGAAGCCCTCACCGAGTACCCAGACGCTAAGAGGGCTCTGGAGGAAA
AGGGCCGTCAGATTCTGATGAAGGACAACCTAATTGATGAGGACCTAGTCGCGGCCAGGGTAGATACCAGGGACGTTGAGGAGAAGGTGGAGTACCTGGAGTCGTCCCTGGACATCCTGCAGACGAGG
TTTGCCCGACTCCTGGCTGAGTACAGTGCCTCCCAGATGAAGCTGAAACAGCGGCTCACTCGGCTGGAGAGCCAGATGAACAGGAGGTGTTGTGGCTTCTCACCTGACAGGGAGAATTCCGAGGATGC
TTCAAAGACTGACTGAAAATGCAGGTGGCTCTGCCTCCTGCTCCCCCCCCCCCCCCCCGGGGCCAGCTCTCTGGGCGACACTATATAGCCTCGGGGTAAAGGGTTTGGCTGTGGTTTCGCCTCAGTGC
TACTCATCCTTTGGGAGTGGTGTGACAGCAAGGAAGAGCCTTAGTTTCCTCTCCTATGAAATGGGACTCATGGCTGTCGGCCCCAGAAGTTCCAGACTATCATGAGGTGGCGAAGGTTGTGGCTTTGG
AAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAATGTTGTTAGTTATGTTGGCATATGGGTATGTTCAGTTGTCGGCGGAGGTCAGGAGAGGGCGTTGCATCCCCTGG
GCTGGAGTTACCTGCTGTTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGCTGTGATGAAATATCATAACCAATGCAAGTTAGGAAGAAAAGGTTTTTTTTTCGGC
TTACACTCCACATCATAGTCCATCATTGAAGGAAGTCAGGGCAGGAACTCAAACTGGGCAGGAAGCTGGAGGCAGGAGCTGATGCAGAGGCCATAAAGGGGAGCTGCTTACTGGTTTGCTCTTCTTAG
CTTGCTAAGCCTGCTTTCTTATAGAACCCAGAACCACCAGCCCGGGAGTAGTCCTACTTGCAATGGGCTAGGCCCTCCTTCATCTATCATTAGTTAAGGAAATGCTCCACGGACTTGCCTACAGCTGG
ATCTTAGGGAGGCATTTTCTCAGTCATCCTCTCAGATGACTCTAACTTGTGTCAAGTTGACATAAAAATCCGACCAGCACAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTG
CTCTGTTACCCAGTCCAGCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTCCAAGTAGCTGGGACCACAGGCACACTCCACTGTTTCCAACCCAGATAAGTTTTGTTTTGTTTTGTTT
TGTTTTGTTTTGTTTTGTTTTAATGAAATCCATGGGAATGTTTAAGCCCCTTATCCTAGCTATGTTATAAATGGATGTCTTACGGGGCTGGTGAGATAACTCAGTGGTTAAGAGCACTAGCTGCTCTT
CCAGAGGTCATGAGTTCAATTCCCAGCAACCACAAGGTGGCTCACAACCATCTATAGGGGGATCTGATGCCCTCTTCGGGCAGGTGGATATATGTGCAAAAGAGCACTCATACATTAAATAATAAATA
CAATTAAAGATATATATAAATGGA

hide sequence


Protein RefSeqs	NP_001268939	(Get FASTA)	NCBI Sequence Viewer
	NP_001407002	(Get FASTA)	NCBI Sequence Viewer
	NP_001407003	(Get FASTA)	NCBI Sequence Viewer
	NP_034048	(Get FASTA)	NCBI Sequence Viewer
	XP_017169234	(Get FASTA)	NCBI Sequence Viewer
	XP_017169237	(Get FASTA)	NCBI Sequence Viewer
	XP_036013008	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH35272	(Get FASTA)	NCBI Sequence Viewer
	AAH49145	(Get FASTA)	NCBI Sequence Viewer
	CAB42891	(Get FASTA)	NCBI Sequence Viewer
	CAB89685	(Get FASTA)	NCBI Sequence Viewer
	EDL14518	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000027288
	ENSMUSP00000027288.8
	ENSMUSP00000142075
	ENSMUSP00000142075.2
	ENSMUSP00000142175
GenBank Protein	Q9JJZ8	(Get FASTA)	NCBI Sequence Viewer
	QJB75239	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_034048 ⟸ NM_009918
- Peptide Label:	isoform 2
- UniProtKB:	Q8CFV6 (UniProtKB/Swiss-Prot), Q9WV01 (UniProtKB/Swiss-Prot), Q9JJZ8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAKVNTQCSQPSPTQLSIKNADRDLDHVENGLGRVSRLIISIRAWASRHLHDEDQTPDSFLDRFHGSELKEVSTRESNAQPNPGEQKPPDGGEGRKEEPIVVDPSSNIYYRWLTAIALPVFYNWCLLV CRACFDELQSEHLTLWLVLDYSADVLYVLDMLVRARTGFLEQGLMVRDTKRLWKHYTKTLHFKLDILSLIPTDLAYLKLGVNYPELRFNRLLKFSRLFEFFDRTETRTNYPNVFRIGNLVLYTLIIIH WNACIYFAISKFIGFGTDSWVYPNTSKPEYARLSRKYIYSLYWSTLTLTTIGETPPPVKDEEYLFVVIDFLVGILIFATIVGNVGSMISNMNAPRVEFQAKIDSVKQYMQFRKVTKDLETRVIRWFDY LWANRKTVDEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGREMYIIKEGKLAVVADDGVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSI GYSDLFCLSKDDLMEALTEYPDAKRALEEKGRQILMKDNLIDEDLVAARVDTRDVEEKVEYLESSLDILQTRFARLLAEYSASQMKLKQRLTRLESQMNRRCCGFSPDRENSEDASKTD hide sequence

RefSeq Acc Id:	NP_001268939 ⟸ NM_001282010
- Peptide Label:	isoform 1
- UniProtKB:	A0A0A6YXW9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKVNTQCSQPSPTQLSIKNADRDLDHVENGLGRSHSPCEETSSTLQQGIAMETRGLAGSARSVVTSQGPARVSRLIISIRAWASRHLHDEDQTPDSFLDRFHGSELKEVSTRESNAQPNPGEQKPPD GGEGRKEEPIVVDPSSNIYYRWLTAIALPVFYNWCLLVCRACFDELQSEHLTLWLVLDYSADVLYVLDMLVRARTGFLEQGLMVRDTKRLWKHYTKTLHFKLDILSLIPTDLAYLKLGVNYPELRFNR LLKFSRLFEFFDRTETRTNYPNVFRIGNLVLYTLIIIHWNACIYFAISKFIGFGTDSWVYPNTSKPEYARLSRKYIYSLYWSTLTLTTIGETPPPVKDEEYLFVVIDFLVGILIFATIVGNVGSMISN MNAPRVEFQAKIDSVKQYMQFRKVTKDLETRVIRWFDYLWANRKTVDEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGREMYIIKEGKLAVVADD GVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDLFCLSKDDLMEALTEYPDAKRALEEKGRQILMKDNLIDEDLVAARVDTRDVEEKVEYLESSLDILQTRFARLLAEYSASQMKLKQR LTRLESQMNRRCCGFSPDRENSEDASKTD hide sequence

RefSeq Acc Id:	XP_017169234 ⟸ XM_017313745
- Peptide Label:	isoform X1
- UniProtKB:	Q8CFV6 (UniProtKB/Swiss-Prot), Q9WV01 (UniProtKB/Swiss-Prot), Q9JJZ8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAKVNTQCSQPSPTQLSIKNADRDLDHVENGLGRVSRLIISIRAWASRHLHDEDQTPDSFLDRF HGSELKEVSTRESNAQPNPGEQKPPDGGEGRKEEPIVVDPSSNIYYRWLTAIALPVFYNWCLLVCRACFDELQSEHLTLWLVLDYSADVLYVLDMLVRARTGFLEQGLMVRDTKRLWKHYTKTLHFKL DILSLIPTDLAYLKLGVNYPELRFNRLLKFSRLFEFFDRTETRTNYPNVFRIGNLVLYTLIIIHWNACIYFAISKFIGFGTDSWVYPNTSKPEYARLSRKYIYSLYWSTLTLTTIGETPPPVKDEEYL FVVIDFLVGILIFATIVGNVGSMISNMNAPRVEFQAKIDSVKQYMQFRKVTKDLETRVIRWFDYLWANRKTVDEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGD YICKKGDIGREMYIIKEGKLAVVADDGVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDLFCLSKDDLMEALTEYPDAKRALEEKGRQILMKDNLIDEDLVAARVDTRDVEEKVEYLES SLDILQTRFARLLAEYSASQMKLKQRLTRLESQMNRRCCGFSPDRENSEDASKTD hide sequence

RefSeq Acc Id:	XP_017169237 ⟸ XM_017313748
- Peptide Label:	isoform X2
- UniProtKB:	A0A6H2E2T0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKVNTQCSQPSPTQLSIKNADRDLDHVENGLGRVSRLIISIRAWASRHLHDEDQTPDSFLDRF HGSELKEVSTRESNAQPNPGEQKPPDGGEGKEEPIVVDPSSNIYYRWLTAIALPVFYNWCLLVCRACFDELQSEHLTLWLVLDYSADVLYVLDMLVRARTGFLEQGLMVRDTKRLWKHYTKTLHFKLD ILSLIPTDLAYLKLGVNYPELRFNRLLKFSRLFEFFDRTETRTNYPNVFRIGNLVLYTLIIIHWNACIYFAISKFIGFGTDSWVYPNTSKPEYARLSRKYIYSLYWSTLTLTTIGETPPPVKDEEYLF VVIDFLVGILIFATIVGNVGSMISNMNAPRVEFQAKIDSVKQYMQFRKVTKDLETRVIRWFDYLWANRKTVDEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDY ICKKGDIGREMYIIKEGKLAVVADDGVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDLFCLSKDDLMEALTEYPDAKRALEEKGRQILMKDNLIDEDLVAARVDTRDVEEKVEYLESS LDILQTRFARLLAEYSASQMKLKQRLTRLESQMNRRCCGFSPDRENSEDASKTD hide sequence

Ensembl Acc Id:

ENSMUSP00000027288 ⟸ ENSMUST00000027288

Protein Domains

Cyclic nucleotide-binding

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JJZ8-F1-model_v2	AlphaFold	Q9JJZ8	1-631	view protein structure

RGD ID:

6873516

Promoter ID:

EPDNEW_M185

Type:

initiation region

Name:

Cnga3_1

Description:

Mus musculus cyclic nucleotide gated channel alpha 3 , transcriptvariant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	37,219,196 - 37,219,256	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000026114	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000027288	ENTREZGENE
	ENSMUST00000027288.10	UniProtKB/Swiss-Prot
	ENSMUST00000194195	ENTREZGENE
	ENSMUST00000194195.6	UniProtKB/Swiss-Prot
	ENSMUST00000195272	ENTREZGENE
Gene3D-CATH	1.10.287.70	UniProtKB/Swiss-Prot
	1.20.5.300	UniProtKB/Swiss-Prot
	2.60.120.10	UniProtKB/Swiss-Prot
	Helix hairpin bin	UniProtKB/Swiss-Prot
InterPro	CLZ_dom	UniProtKB/Swiss-Prot
	CNG_Cation_Channel	UniProtKB/Swiss-Prot
	cNMP-bd-like	UniProtKB/Swiss-Prot
	cNMP-bd_CS	UniProtKB/Swiss-Prot
	cNMP-bd_dom	UniProtKB/Swiss-Prot
	Ion_trans_dom	UniProtKB/Swiss-Prot
	RmlC-like_jellyroll	UniProtKB/Swiss-Prot
KEGG Report	mmu:12790	UniProtKB/Swiss-Prot
MGD	MGI:1341818	ENTREZGENE
NCBI Gene	12790	ENTREZGENE
PANTHER	CYCLIC NUCLEOTIDE-GATED CATION CHANNEL ALPHA-3	UniProtKB/Swiss-Prot
	CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A	UniProtKB/Swiss-Prot
Pfam	CLZ	UniProtKB/Swiss-Prot
	cNMP_binding	UniProtKB/Swiss-Prot
	Ion_trans	UniProtKB/Swiss-Prot
PhenoGen	Cnga3	PhenoGen
PROSITE	CNMP_BINDING_1	UniProtKB/Swiss-Prot
	CNMP_BINDING_2	UniProtKB/Swiss-Prot
	CNMP_BINDING_3	UniProtKB/Swiss-Prot
SMART	cNMP	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF51206	UniProtKB/Swiss-Prot
	Voltage-gated potassium channels	UniProtKB/Swiss-Prot
UniProt	A0A0A6YXW9	ENTREZGENE, UniProtKB/TrEMBL
	A0A0A6YY14_MOUSE	UniProtKB/TrEMBL
	A0A6H2E2T0	ENTREZGENE, UniProtKB/TrEMBL
	CNGA3_MOUSE	UniProtKB/Swiss-Prot
	Q8CFV6	ENTREZGENE
	Q9JJZ8	ENTREZGENE
	Q9WV01	ENTREZGENE
UniProt Secondary	Q8CFV6	UniProtKB/Swiss-Prot
	Q9WV01	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Mammalian Phenotype

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Mammalian Phenotype