GRM2 (glutamate metabotropic receptor 2) - Rat Genome Database

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Gene: GRM2 (glutamate metabotropic receptor 2) Homo sapiens
Analyze
Symbol: GRM2
Name: glutamate metabotropic receptor 2
RGD ID: 732930
HGNC Page HGNC:4594
Description: Predicted to enable group II metabotropic glutamate receptor activity and scaffold protein binding activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway; positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within gene expression; intracellular glutamate homeostasis; and long-term synaptic depression. Predicted to be located in astrocyte projection; axon; and presynapse. Predicted to be active in glutamatergic synapse; postsynaptic membrane; and presynaptic membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: GLUR2; glutamate receptor homolog; glutamate receptor, metabotropic 2; GPRC1B; metabotropic glutamate receptor 2; mGlu2; MGLUR2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,707,068 - 51,718,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,707,068 - 51,718,613 (+)EnsemblGRCh38hg38GRCh38
GRCh37351,741,084 - 51,752,629 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,718,004 - 51,727,669 (+)NCBINCBI36Build 36hg18NCBI36
Build 34351,718,037 - 51,727,168NCBI
Celera351,718,848 - 51,731,506 (+)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef351,802,839 - 51,816,142 (+)NCBIHuRef
CHM1_1351,693,893 - 51,705,447 (+)NCBICHM1_1
T2T-CHM13v2.0351,738,578 - 51,751,605 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Differences in 5-HT2A and mGlu2 Receptor Expression Levels and Repressive Epigenetic Modifications at the 5-HT2A Promoter Region in the Roman Low- (RLA-I) and High- (RHA-I) Avoidance Rat Strains. Fomsgaard L, etal., Mol Neurobiol. 2018 Mar;55(3):1998-2012. doi: 10.1007/s12035-017-0457-y. Epub 2017 Mar 6.
2. Deletion of the type 2 metabotropic glutamate receptor increases heroin abuse vulnerability in transgenic rats. Gao JT, etal., Neuropsychopharmacology. 2018 Dec;43(13):2615-2626. doi: 10.1038/s41386-018-0231-5. Epub 2018 Oct 3.
3. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
4. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Ethanol concentration-dependent alterations in gene expression during acute binge drinking in the HIV-1 transgenic rat. Sarkar S and Chang SL, Alcohol Clin Exp Res. 2013 Jul;37(7):1082-90. doi: 10.1111/acer.12077. Epub 2013 Feb 15.
9. Deletion of Type 2 Metabotropic Glutamate Receptor Decreases Sensitivity to Cocaine Reward in Rats. Yang HJ, etal., Cell Rep. 2017 Jul 11;20(2):319-332. doi: 10.1016/j.celrep.2017.06.046.
Additional References at PubMed
PMID:7620613   PMID:8824806   PMID:8863838   PMID:9651375   PMID:11317221   PMID:11641422   PMID:11840499   PMID:11850456   PMID:11891216   PMID:11897108   PMID:12477932   PMID:15035981  
PMID:15246118   PMID:15330338   PMID:15489334   PMID:15837331   PMID:16102532   PMID:16344560   PMID:16678921   PMID:18297054   PMID:18853337   PMID:19026996   PMID:19086053   PMID:19156168  
PMID:19367581   PMID:19386277   PMID:19402024   PMID:19635471   PMID:19945495   PMID:20211215   PMID:21173788   PMID:21873635   PMID:21881873   PMID:22870276   PMID:22988116   PMID:23129762  
PMID:23149219   PMID:23407939   PMID:24080311   PMID:24623722   PMID:24949866   PMID:25150943   PMID:25416956   PMID:25571949   PMID:26589404   PMID:26758213   PMID:27218869   PMID:28319085  
PMID:28392297   PMID:29360159   PMID:30326345   PMID:31586073   PMID:31706572   PMID:32296183   PMID:33398167   PMID:34135509   PMID:34135510   PMID:34194039   PMID:34387961   PMID:34521824  
PMID:34903715   PMID:36779763   PMID:36889432   PMID:37629122   PMID:38739800  


Genomics

Comparative Map Data
GRM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,707,068 - 51,718,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,707,068 - 51,718,613 (+)EnsemblGRCh38hg38GRCh38
GRCh37351,741,084 - 51,752,629 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,718,004 - 51,727,669 (+)NCBINCBI36Build 36hg18NCBI36
Build 34351,718,037 - 51,727,168NCBI
Celera351,718,848 - 51,731,506 (+)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef351,802,839 - 51,816,142 (+)NCBIHuRef
CHM1_1351,693,893 - 51,705,447 (+)NCBICHM1_1
T2T-CHM13v2.0351,738,578 - 51,751,605 (+)NCBIT2T-CHM13v2.0
Grm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,521,733 - 106,533,308 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,520,294 - 106,533,281 (-)EnsemblGRCm39 Ensembl
GRCm389106,644,534 - 106,656,109 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,643,095 - 106,656,082 (-)EnsemblGRCm38mm10GRCm38
MGSCv379106,546,865 - 106,558,440 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,546,755 - 106,558,434 (-)NCBIMGSCv36mm8
Celera9106,265,562 - 106,277,130 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.98NCBI
Grm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88116,158,810 - 116,171,857 (-)NCBIGRCr8
mRatBN7.28107,280,099 - 107,293,159 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,280,099 - 107,293,146 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8112,903,031 - 112,916,129 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08111,102,213 - 111,115,309 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,944,991 - 108,958,085 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,344,999 - 115,358,628 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,344,999 - 115,358,046 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,705,123 - 114,718,193 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,837,086 - 111,850,133 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18111,857,819 - 111,869,581 (-)NCBI
Celera8106,592,051 - 106,605,096 (-)NCBICelera
Cytogenetic Map8q32NCBI
Grm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,309,028 - 3,320,966 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555323,309,034 - 3,320,954 (+)NCBIChiLan1.0ChiLan1.0
GRM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,694,559 - 51,707,434 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,699,333 - 51,712,208 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,639,792 - 51,652,779 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1352,873,144 - 52,884,401 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl352,873,144 - 52,884,395 (+)Ensemblpanpan1.1panPan2
GRM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,915,178 - 37,926,276 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,915,665 - 37,924,296 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,895,193 - 37,906,256 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,264,331 - 38,275,394 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,264,304 - 38,275,372 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,627,888 - 37,638,953 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02038,036,604 - 38,047,669 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,321,755 - 38,332,818 (-)NCBIUU_Cfam_GSD_1.0
Grm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,281,725 - 66,293,182 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365293,042,248 - 3,053,673 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365293,042,220 - 3,053,670 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1333,926,804 - 33,938,269 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11333,924,303 - 33,938,279 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,130,553 - 37,141,351 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,044,974 - 13,056,469 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,046,641 - 13,056,453 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041153,898,374 - 153,910,372 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Grm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247305,419,896 - 5,431,361 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247305,419,892 - 5,431,268 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GRM2
54 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3p21.31-14.3(chr3:49461000-55314500)x1 copy number loss See cases [RCV000051511] Chr3:49461000..55314500 [GRCh38]
Chr3:49498433..55348528 [GRCh37]
Chr3:49473437..55323568 [NCBI36]
Chr3:3p21.31-14.3
pathogenic
NM_000839.3(GRM2):c.1297C>T (p.Arg433Cys) single nucleotide variant Malignant melanoma [RCV000066134] Chr3:51715070 [GRCh38]
Chr3:51749086 [GRCh37]
Chr3:51724126 [NCBI36]
Chr3:3p21.2
not provided
GRCh38/hg38 3p21.2-14.3(chr3:51394434-55064449)x1 copy number loss See cases [RCV000143631] Chr3:51394434..55064449 [GRCh38]
Chr3:51431865..55098476 [GRCh37]
Chr3:51406905..55073516 [NCBI36]
Chr3:3p21.2-14.3
likely pathogenic
NM_000839.5(GRM2):c.1354C>T (p.Arg452Cys) single nucleotide variant not specified [RCV004315279] Chr3:51715127 [GRCh38]
Chr3:51749143 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1904G>A (p.Arg635Gln) single nucleotide variant not specified [RCV004307960] Chr3:51715677 [GRCh38]
Chr3:51749693 [GRCh37]
Chr3:3p21.2
uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
NM_000839.5(GRM2):c.810C>T (p.Thr270=) single nucleotide variant not provided [RCV000884704] Chr3:51712832 [GRCh38]
Chr3:51746848 [GRCh37]
Chr3:3p21.2
benign
NM_000839.5(GRM2):c.2595G>A (p.Val865=) single nucleotide variant not provided [RCV000969012] Chr3:51718088 [GRCh38]
Chr3:51752104 [GRCh37]
Chr3:3p21.2
benign
NM_000839.5(GRM2):c.369C>T (p.Asp123=) single nucleotide variant not provided [RCV000924029] Chr3:51709352 [GRCh38]
Chr3:51743368 [GRCh37]
Chr3:3p21.2
likely benign
NM_000839.5(GRM2):c.1316A>G (p.Asn439Ser) single nucleotide variant not provided [RCV000897454] Chr3:51715089 [GRCh38]
Chr3:51749105 [GRCh37]
Chr3:3p21.2
benign
NM_000839.5(GRM2):c.2074C>T (p.Leu692Phe) single nucleotide variant not provided [RCV000896986] Chr3:51715847 [GRCh38]
Chr3:51749863 [GRCh37]
Chr3:3p21.2
likely benign
GRCh37/hg19 3p21.31-21.1(chr3:45153770-53878616) copy number gain not provided [RCV000767704] Chr3:45153770..53878616 [GRCh37]
Chr3:3p21.31-21.1
pathogenic
NM_000839.5(GRM2):c.2472C>T (p.Asn824=) single nucleotide variant not provided [RCV000962029] Chr3:51717744 [GRCh38]
Chr3:51751760 [GRCh37]
Chr3:3p21.2
benign
GRCh37/hg19 3p21.2-21.1(chr3:51247306-53069942)x3 copy number gain not provided [RCV001005434] Chr3:51247306..53069942 [GRCh37]
Chr3:3p21.2-21.1
uncertain significance
NM_000839.5(GRM2):c.420T>C (p.Ile140=) single nucleotide variant not provided [RCV000931551] Chr3:51709403 [GRCh38]
Chr3:51743419 [GRCh37]
Chr3:3p21.2
likely benign
NM_000839.5(GRM2):c.2001T>C (p.Gly667=) single nucleotide variant not provided [RCV000922644] Chr3:51715774 [GRCh38]
Chr3:51749790 [GRCh37]
Chr3:3p21.2
likely benign
NM_000839.5(GRM2):c.888T>C (p.Gly296=) single nucleotide variant not provided [RCV000937079] Chr3:51712910 [GRCh38]
Chr3:51746926 [GRCh37]
Chr3:3p21.2
likely benign
NM_000839.5(GRM2):c.743C>T (p.Ala248Val) single nucleotide variant not provided [RCV000913640] Chr3:51712765 [GRCh38]
Chr3:51746781 [GRCh37]
Chr3:3p21.2
likely benign
NM_000839.5(GRM2):c.1495C>T (p.Arg499Cys) single nucleotide variant not specified [RCV004117344] Chr3:51715268 [GRCh38]
Chr3:51749284 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.374C>A (p.Ser125Tyr) single nucleotide variant not specified [RCV004164783] Chr3:51709357 [GRCh38]
Chr3:51743373 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1346G>A (p.Gly449Asp) single nucleotide variant not specified [RCV004224299] Chr3:51715119 [GRCh38]
Chr3:51749135 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.130G>A (p.Gly44Ser) single nucleotide variant not specified [RCV004093050] Chr3:51709113 [GRCh38]
Chr3:51743129 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1394G>A (p.Arg465His) single nucleotide variant not specified [RCV004182294] Chr3:51715167 [GRCh38]
Chr3:51749183 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1066A>G (p.Ser356Gly) single nucleotide variant not specified [RCV004216369] Chr3:51713088 [GRCh38]
Chr3:51747104 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1037G>A (p.Arg346His) single nucleotide variant not specified [RCV004189944] Chr3:51713059 [GRCh38]
Chr3:51747075 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2363G>A (p.Arg788Gln) single nucleotide variant not specified [RCV004203170] Chr3:51716136 [GRCh38]
Chr3:51750152 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.842C>T (p.Ala281Val) single nucleotide variant not specified [RCV004112933] Chr3:51712864 [GRCh38]
Chr3:51746880 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.975T>A (p.Ser325Arg) single nucleotide variant not specified [RCV004185339] Chr3:51712997 [GRCh38]
Chr3:51747013 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1709G>A (p.Gly570Glu) single nucleotide variant not specified [RCV004119802] Chr3:51715482 [GRCh38]
Chr3:51749498 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1399C>T (p.Arg467Cys) single nucleotide variant not specified [RCV004206099] Chr3:51715172 [GRCh38]
Chr3:51749188 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.133G>A (p.Gly45Ser) single nucleotide variant not specified [RCV004219021] Chr3:51709116 [GRCh38]
Chr3:51743132 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2138G>A (p.Arg713Gln) single nucleotide variant not specified [RCV004128247] Chr3:51715911 [GRCh38]
Chr3:51749927 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2460G>T (p.Gln820His) single nucleotide variant not specified [RCV004167420] Chr3:51717732 [GRCh38]
Chr3:51751748 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1886C>T (p.Thr629Met) single nucleotide variant not specified [RCV004229137] Chr3:51715659 [GRCh38]
Chr3:51749675 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1469C>T (p.Pro490Leu) single nucleotide variant not specified [RCV004203517] Chr3:51715242 [GRCh38]
Chr3:51749258 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2491C>A (p.Pro831Thr) single nucleotide variant not specified [RCV004143125] Chr3:51717763 [GRCh38]
Chr3:51751779 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1087G>A (p.Ala363Thr) single nucleotide variant not specified [RCV004181967] Chr3:51713109 [GRCh38]
Chr3:51747125 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.97G>A (p.Val33Met) single nucleotide variant not specified [RCV004212439] Chr3:51709080 [GRCh38]
Chr3:51743096 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.603C>G (p.Phe201Leu) single nucleotide variant not specified [RCV004175686] Chr3:51712625 [GRCh38]
Chr3:51746641 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1612G>A (p.Ala538Thr) single nucleotide variant not specified [RCV004075350] Chr3:51715385 [GRCh38]
Chr3:51749401 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2171G>A (p.Arg724His) single nucleotide variant not specified [RCV004091285] Chr3:51715944 [GRCh38]
Chr3:51749960 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1592G>A (p.Arg531Gln) single nucleotide variant not specified [RCV004075475] Chr3:51715365 [GRCh38]
Chr3:51749381 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2432C>T (p.Ala811Val) single nucleotide variant not specified [RCV004261481] Chr3:51717704 [GRCh38]
Chr3:51751720 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.560C>T (p.Pro187Leu) single nucleotide variant not specified [RCV004271260] Chr3:51712582 [GRCh38]
Chr3:51746598 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.589G>C (p.Glu197Gln) single nucleotide variant not specified [RCV004269474] Chr3:51712611 [GRCh38]
Chr3:51746627 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.599G>A (p.Arg200His) single nucleotide variant not specified [RCV004345566] Chr3:51712621 [GRCh38]
Chr3:51746637 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1762G>A (p.Val588Ile) single nucleotide variant not specified [RCV004346341] Chr3:51715535 [GRCh38]
Chr3:51749551 [GRCh37]
Chr3:3p21.2
uncertain significance
GRCh37/hg19 3p21.2-14.2(chr3:51149374-59265315)x1 copy number loss not specified [RCV003986409] Chr3:51149374..59265315 [GRCh37]
Chr3:3p21.2-14.2
pathogenic
NM_000839.5(GRM2):c.1994G>A (p.Arg665Gln) single nucleotide variant not specified [RCV004396030] Chr3:51715767 [GRCh38]
Chr3:51749783 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2228C>T (p.Thr743Met) single nucleotide variant not specified [RCV004396032] Chr3:51716001 [GRCh38]
Chr3:51750017 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1907G>A (p.Arg636His) single nucleotide variant not specified [RCV004396029] Chr3:51715680 [GRCh38]
Chr3:51749696 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2441T>C (p.Leu814Pro) single nucleotide variant not specified [RCV004396033] Chr3:51717713 [GRCh38]
Chr3:51751729 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2597A>G (p.Asp866Gly) single nucleotide variant not specified [RCV004396035] Chr3:51718090 [GRCh38]
Chr3:51752106 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1064G>A (p.Cys355Tyr) single nucleotide variant not specified [RCV004396026] Chr3:51713086 [GRCh38]
Chr3:51747102 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.736A>G (p.Ser246Gly) single nucleotide variant not specified [RCV004396038] Chr3:51712758 [GRCh38]
Chr3:51746774 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1400G>A (p.Arg467His) single nucleotide variant not specified [RCV004396028] Chr3:51715173 [GRCh38]
Chr3:51749189 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1289C>T (p.Ala430Val) single nucleotide variant not specified [RCV004396027] Chr3:51715062 [GRCh38]
Chr3:51749078 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2080G>A (p.Val694Met) single nucleotide variant not specified [RCV004396031] Chr3:51715853 [GRCh38]
Chr3:51749869 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2485C>T (p.Arg829Trp) single nucleotide variant not specified [RCV004396034] Chr3:51717757 [GRCh38]
Chr3:51751773 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.430T>G (p.Tyr144Asp) single nucleotide variant not specified [RCV004396036] Chr3:51709413 [GRCh38]
Chr3:51743429 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2141G>A (p.Arg714Gln) single nucleotide variant not specified [RCV004634892] Chr3:51715914 [GRCh38]
Chr3:51749930 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.1073G>T (p.Arg358Leu) single nucleotide variant not specified [RCV004624053] Chr3:51713095 [GRCh38]
Chr3:51747111 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2158C>T (p.Arg720Cys) single nucleotide variant not specified [RCV004624054] Chr3:51715931 [GRCh38]
Chr3:51749947 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.811C>T (p.Arg271Cys) single nucleotide variant not specified [RCV004624055] Chr3:51712833 [GRCh38]
Chr3:51746849 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.2398C>T (p.Leu800Phe) single nucleotide variant not specified [RCV004634891] Chr3:51717670 [GRCh38]
Chr3:51751686 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.49G>A (p.Val17Met) single nucleotide variant not specified [RCV004634890] Chr3:51709032 [GRCh38]
Chr3:51743048 [GRCh37]
Chr3:3p21.2
uncertain significance
NM_000839.5(GRM2):c.923A>T (p.Glu308Val) single nucleotide variant not specified [RCV004634893] Chr3:51712945 [GRCh38]
Chr3:51746961 [GRCh37]
Chr3:3p21.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2573
Count of miRNA genes:957
Interacting mature miRNAs:1155
Transcripts:ENST00000296479, ENST00000395052, ENST00000419928, ENST00000442933, ENST00000464585, ENST00000475478, ENST00000477330, ENST00000496661
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406976176GWAS625152_Hmacrophage inflammatory protein 1b measurement QTL GWAS625152 (human)5e-10macrophage inflammatory protein 1b measurement35171327251713273Human
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human
1331643COPD16_HChronic obstructive pulmonary disease QTL 16 (human)1.07Chronic airflow obstructionpost-BD FEV1 minus pre-BD FEV1/pre-BD FEV1 x 10034938065175380651Human

Markers in Region
WI-20087  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37351,752,274 - 51,752,544UniSTSGRCh37
Build 36351,727,314 - 51,727,584RGDNCBI36
Celera351,731,151 - 51,731,421RGD
Cytogenetic Map3p21.2UniSTS
HuRef351,815,787 - 51,816,057UniSTS
GeneMap99-GB4 RH Map3160.13UniSTS
Whitehead-RH Map3211.7UniSTS
RH66405  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37351,752,321 - 51,752,463UniSTSGRCh37
Build 36351,727,361 - 51,727,503RGDNCBI36
Celera351,731,198 - 51,731,340RGD
Cytogenetic Map3p21.2UniSTS
HuRef351,815,834 - 51,815,976UniSTS
GeneMap99-GB4 RH Map3161.32UniSTS
A002C19  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37351,752,331 - 51,752,502UniSTSGRCh37
Build 36351,727,371 - 51,727,542RGDNCBI36
Celera351,731,208 - 51,731,379RGD
Cytogenetic Map3p21.2UniSTS
HuRef351,815,844 - 51,816,015UniSTS
GeneMap99-GB4 RH Map3161.32UniSTS
GRM2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37351,746,554 - 51,746,750UniSTSGRCh37
Build 36351,721,594 - 51,721,790RGDNCBI36
Celera351,725,429 - 51,725,625RGD
HuRef351,810,065 - 51,810,261UniSTS
SHGC-77001  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p21.2UniSTS
TNG Radiation Hybrid Map332009.0UniSTS
GeneMap99-GB4 RH Map3162.92UniSTS
NCBI RH Map3494.1UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1202 2352 2787 2234 4899 1619 2174 1 533 1557 372 2223 6646 6051 45 3711 752 1695 1532 170 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_000839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB045011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB209164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC099050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK289984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY999299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA391442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA528713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU432122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L35318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000296479   ⟹   ENSP00000296479
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,707,088 - 51,718,112 (+)Ensembl
Ensembl Acc Id: ENST00000395052   ⟹   ENSP00000378492
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,707,068 - 51,718,613 (+)Ensembl
Ensembl Acc Id: ENST00000419928   ⟹   ENSP00000404797
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,707,411 - 51,709,193 (+)Ensembl
Ensembl Acc Id: ENST00000442933   ⟹   ENSP00000408906
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,708,845 - 51,718,252 (+)Ensembl
Ensembl Acc Id: ENST00000464585
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,707,305 - 51,718,613 (+)Ensembl
Ensembl Acc Id: ENST00000475478
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,707,090 - 51,718,613 (+)Ensembl
Ensembl Acc Id: ENST00000477330
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,711,272 - 51,712,581 (+)Ensembl
Ensembl Acc Id: ENST00000496661
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,711,272 - 51,714,068 (+)Ensembl
RefSeq Acc Id: NM_000839   ⟹   NP_000830
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,068 - 51,718,613 (+)NCBI
GRCh37351,741,081 - 51,752,629 (+)ENTREZGENE
Build 36351,718,004 - 51,727,669 (+)NCBI Archive
HuRef351,802,839 - 51,816,142 (+)ENTREZGENE
CHM1_1351,693,893 - 51,705,447 (+)NCBI
T2T-CHM13v2.0351,738,578 - 51,751,605 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349116   ⟹   NP_001336045
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,068 - 51,718,613 (+)NCBI
T2T-CHM13v2.0351,738,578 - 51,751,605 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349117   ⟹   NP_001336046
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,068 - 51,718,613 (+)NCBI
T2T-CHM13v2.0351,738,578 - 51,751,605 (+)NCBI
Sequence:
RefSeq Acc Id: NR_146059
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,068 - 51,718,613 (+)NCBI
T2T-CHM13v2.0351,738,578 - 51,751,605 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011533636   ⟹   XP_011531938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,068 - 51,718,613 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011533637   ⟹   XP_011531939
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,710,699 - 51,718,613 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011533642   ⟹   XP_011531944
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,068 - 51,715,367 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011533643   ⟹   XP_011531945
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,713,223 - 51,718,613 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017006271   ⟹   XP_016861760
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,068 - 51,718,613 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024453490   ⟹   XP_024309258
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,068 - 51,715,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047448047   ⟹   XP_047304003
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,068 - 51,718,613 (+)NCBI
RefSeq Acc Id: XM_047448048   ⟹   XP_047304004
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,709,373 - 51,718,613 (+)NCBI
RefSeq Acc Id: XM_047448049   ⟹   XP_047304005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,709,399 - 51,718,613 (+)NCBI
RefSeq Acc Id: XM_047448050   ⟹   XP_047304006
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,709,406 - 51,718,613 (+)NCBI
RefSeq Acc Id: XM_047448051   ⟹   XP_047304007
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,709,369 - 51,718,613 (+)NCBI
RefSeq Acc Id: XM_054346367   ⟹   XP_054202342
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,738,584 - 51,751,605 (+)NCBI
RefSeq Acc Id: XM_054346368   ⟹   XP_054202343
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,738,578 - 51,751,605 (+)NCBI
RefSeq Acc Id: XM_054346369   ⟹   XP_054202344
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,738,584 - 51,751,605 (+)NCBI
RefSeq Acc Id: XM_054346370   ⟹   XP_054202345
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,743,691 - 51,751,605 (+)NCBI
RefSeq Acc Id: XM_054346371   ⟹   XP_054202346
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,740,883 - 51,751,605 (+)NCBI
RefSeq Acc Id: XM_054346372   ⟹   XP_054202347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,740,909 - 51,751,605 (+)NCBI
RefSeq Acc Id: XM_054346373   ⟹   XP_054202348
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,740,916 - 51,751,605 (+)NCBI
RefSeq Acc Id: XM_054346374   ⟹   XP_054202349
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,740,879 - 51,751,605 (+)NCBI
RefSeq Acc Id: XM_054346375   ⟹   XP_054202350
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,738,584 - 51,748,359 (+)NCBI
RefSeq Acc Id: XM_054346376   ⟹   XP_054202351
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,746,215 - 51,751,605 (+)NCBI
RefSeq Acc Id: XM_054346377   ⟹   XP_054202352
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0351,738,584 - 51,748,260 (+)NCBI
Protein Sequences
Protein RefSeqs NP_000830 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336045 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336046 (Get FASTA)   NCBI Sequence Viewer  
  XP_011531938 (Get FASTA)   NCBI Sequence Viewer  
  XP_011531939 (Get FASTA)   NCBI Sequence Viewer  
  XP_011531944 (Get FASTA)   NCBI Sequence Viewer  
  XP_011531945 (Get FASTA)   NCBI Sequence Viewer  
  XP_016861760 (Get FASTA)   NCBI Sequence Viewer  
  XP_024309258 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304003 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304004 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304005 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304006 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304007 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202342 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202343 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202344 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202345 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202346 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202347 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202348 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202349 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202350 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202351 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202352 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA76855 (Get FASTA)   NCBI Sequence Viewer  
  AAH41447 (Get FASTA)   NCBI Sequence Viewer  
  AAI13616 (Get FASTA)   NCBI Sequence Viewer  
  AAI13620 (Get FASTA)   NCBI Sequence Viewer  
  AAY14640 (Get FASTA)   NCBI Sequence Viewer  
  ABY87921 (Get FASTA)   NCBI Sequence Viewer  
  BAB19817 (Get FASTA)   NCBI Sequence Viewer  
  BAD92401 (Get FASTA)   NCBI Sequence Viewer  
  BAF82673 (Get FASTA)   NCBI Sequence Viewer  
  BAF98707 (Get FASTA)   NCBI Sequence Viewer  
  BAG63904 (Get FASTA)   NCBI Sequence Viewer  
  EAW65150 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000296479
  ENSP00000296479.5
  ENSP00000378492
  ENSP00000378492.3
  ENSP00000404797.1
  ENSP00000408906.2
GenBank Protein Q14416 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_000830   ⟸   NM_000839
- Peptide Label: isoform a precursor
- UniProtKB: Q52MC6 (UniProtKB/Swiss-Prot),   Q14CU5 (UniProtKB/Swiss-Prot),   B0M0K7 (UniProtKB/Swiss-Prot),   Q9H3N6 (UniProtKB/Swiss-Prot),   Q14416 (UniProtKB/Swiss-Prot),   A8K1R9 (UniProtKB/TrEMBL),   B0AZM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011531938   ⟸   XM_011533636
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011531944   ⟸   XM_011533642
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011531939   ⟸   XM_011533637
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011531945   ⟸   XM_011533643
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_016861760   ⟸   XM_017006271
- Peptide Label: isoform X1
- UniProtKB: Q52MC6 (UniProtKB/Swiss-Prot),   Q14CU5 (UniProtKB/Swiss-Prot),   B0M0K7 (UniProtKB/Swiss-Prot),   Q9H3N6 (UniProtKB/Swiss-Prot),   Q14416 (UniProtKB/Swiss-Prot),   A8K1R9 (UniProtKB/TrEMBL),   B0AZM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001336046   ⟸   NM_001349117
- Peptide Label: isoform d
- UniProtKB: Q86YG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001336045   ⟸   NM_001349116
- Peptide Label: isoform c
- UniProtKB: Q86YG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024309258   ⟸   XM_024453490
- Peptide Label: isoform X7
- UniProtKB: H7BXL3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000296479   ⟸   ENST00000296479
Ensembl Acc Id: ENSP00000408906   ⟸   ENST00000442933
Ensembl Acc Id: ENSP00000404797   ⟸   ENST00000419928
Ensembl Acc Id: ENSP00000378492   ⟸   ENST00000395052
RefSeq Acc Id: XP_047304003   ⟸   XM_047448047
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047304007   ⟸   XM_047448051
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047304004   ⟸   XM_047448048
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047304005   ⟸   XM_047448049
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047304006   ⟸   XM_047448050
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054202343   ⟸   XM_054346368
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054202344   ⟸   XM_054346369
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054202342   ⟸   XM_054346367
- Peptide Label: isoform X1
- UniProtKB: Q9H3N6 (UniProtKB/Swiss-Prot),   Q52MC6 (UniProtKB/Swiss-Prot),   Q14CU5 (UniProtKB/Swiss-Prot),   Q14416 (UniProtKB/Swiss-Prot),   B0M0K7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054202350   ⟸   XM_054346375
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054202352   ⟸   XM_054346377
- Peptide Label: isoform X7
- UniProtKB: H7BXL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054202349   ⟸   XM_054346374
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054202346   ⟸   XM_054346371
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054202347   ⟸   XM_054346372
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054202348   ⟸   XM_054346373
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054202345   ⟸   XM_054346370
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054202351   ⟸   XM_054346376
- Peptide Label: isoform X6
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q14416-F1-model_v2 AlphaFold Q14416 1-872 view protein structure

Promoters
RGD ID:6864566
Promoter ID:EPDNEW_H5448
Type:initiation region
Name:GRM2_1
Description:glutamate metabotropic receptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H5449  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,067 - 51,707,127EPDNEW
RGD ID:6864568
Promoter ID:EPDNEW_H5449
Type:multiple initiation site
Name:GRM2_2
Description:glutamate metabotropic receptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H5448  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,707,249 - 51,707,309EPDNEW
RGD ID:6801106
Promoter ID:HG_KWN:45181
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:NB4
Transcripts:ENST00000296479,   NM_000839,   OTTHUMT00000346544,   OTTHUMT00000346545,   OTTHUMT00000346546,   OTTHUMT00000346548,   UC003DBP.1,   UC010HLU.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36351,718,041 - 51,718,541 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:4594 AgrOrtholog
COSMIC GRM2 COSMIC
Ensembl Genes ENSG00000164082 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000296479 ENTREZGENE
  ENST00000296479.9 UniProtKB/TrEMBL
  ENST00000395052 ENTREZGENE
  ENST00000395052.8 UniProtKB/Swiss-Prot
  ENST00000419928.1 UniProtKB/TrEMBL
  ENST00000442933.2 UniProtKB/TrEMBL
  ENST00000475478 ENTREZGENE
Gene3D-CATH 2.10.50.30 UniProtKB/Swiss-Prot
  3.40.50.2300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR, family 3, nine cysteines domain UniProtKB/TrEMBL
GTEx ENSG00000164082 GTEx
HGNC ID HGNC:4594 ENTREZGENE
Human Proteome Map GRM2 Human Proteome Map
InterPro ANF_lig-bd_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_3_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_3_mtglu_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_3_mtglu_rcpt_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  mGluR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:2912 UniProtKB/Swiss-Prot
NCBI Gene 2912 ENTREZGENE
OMIM 604099 OMIM
PANTHER METABOTROPIC GLUTAMATE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  METABOTROPIC GLUTAMATE RECEPTOR 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANF_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NCD3G UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA28991 PharmGKB
PRINTS GPCRMGR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MTABOTROPC2R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MTABOTROPICR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K1R9 ENTREZGENE, UniProtKB/TrEMBL
  B0AZM5 ENTREZGENE, UniProtKB/TrEMBL
  B0M0K7 ENTREZGENE
  C9JD41_HUMAN UniProtKB/TrEMBL
  C9JL63_HUMAN UniProtKB/TrEMBL
  GRM2_HUMAN UniProtKB/Swiss-Prot
  H7BXL3 ENTREZGENE, UniProtKB/TrEMBL
  Q14416 ENTREZGENE
  Q14CU5 ENTREZGENE
  Q52MC6 ENTREZGENE
  Q86YG3 ENTREZGENE, UniProtKB/TrEMBL
  Q9H3N6 ENTREZGENE
UniProt Secondary B0M0K7 UniProtKB/Swiss-Prot
  Q14CU5 UniProtKB/Swiss-Prot
  Q52MC6 UniProtKB/Swiss-Prot
  Q9H3N6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-12 GRM2  glutamate metabotropic receptor 2  GRM2  glutamate receptor, metabotropic 2  Symbol and/or name change 5135510 APPROVED