Cnga3 (cyclic nucleotide gated channel subunit alpha 3) - Rat Genome Database

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Gene: Cnga3 (cyclic nucleotide gated channel subunit alpha 3) Rattus rattus
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Symbol: Cnga3
Name: cyclic nucleotide gated channel subunit alpha 3
RGD ID: 626072265
Description: ENCODES a protein that exhibits cadherin binding (ortholog); cGMP binding (ortholog); intracellularly cAMP-activated cation channel activity (ortholog); INVOLVED IN inorganic cation import across plasma membrane (ortholog); membrane depolarization (ortholog); monoatomic cation transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; visual phototransduction pathway; ASSOCIATED WITH achromatopsia (ortholog); Achromatopsia 1 (ortholog); achromatopsia 2 (ortholog); FOUND IN axon initial segment (ortholog); dendrite (ortholog); glial cell projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclic nucleotide-gated cation channel alpha-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Rrattus_CSIRO_v1 - Rrattus_CSIRO_v1 Assembly
Position:
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14113,421,744 - 113,463,733 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cnga3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14113,421,744 - 113,463,733 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1
CNGA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,346,456 - 98,398,601 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,346,188 - 98,399,797 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh37298,962,919 - 99,015,064 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,329,050 - 98,381,496 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34298,444,917 - 98,473,581NCBI
Celera293,166,338 - 93,218,784 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef292,727,722 - 92,780,234 (+)NCBIHuRef
CHM1_1298,966,936 - 99,019,379 (+)NCBICHM1_1
T2T-CHM13v2.0298,804,385 - 98,856,818 (+)NCBIT2T-CHM13v2.0
Cnga3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,257,317 - 37,302,465 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,253,515 - 37,304,128 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38137,218,241 - 37,263,384 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,214,434 - 37,263,384 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37137,276,106 - 37,320,229 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36137,163,807 - 37,207,930 (+)NCBIMGSCv36mm8
Celera136,995,421 - 37,043,436 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
Cnga3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,943,353 - 46,989,862 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl946,928,810 - 46,989,862 (+)EnsemblGRCr8
mRatBN7.2939,447,534 - 39,494,044 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,448,034 - 39,493,183 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx947,943,588 - 47,990,097 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,066,347 - 53,112,858 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0951,348,230 - 51,394,733 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd950,714,068 - 50,760,570 (+)NCBI
Lyon_Normotensive946,489,477 - 46,535,978 (+)NCBI
Lyon_Hypertensive946,624,825 - 46,671,327 (+)NCBI
F344_StmMcwi948,550,430 - 48,596,949 (+)NCBI
Rnor_6.0943,807,412 - 43,858,225 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,807,677 - 43,854,396 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0943,476,297 - 43,497,654 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4936,180,295 - 36,203,098 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera937,227,455 - 37,249,072 (+)NCBICelera
RGSC_v3.1936,181,708 - 36,204,512 (+)NCBI
Cytogenetic Map9q21NCBI
Cnga3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,884,309 - 4,906,902 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554704,884,054 - 4,907,151 (+)NCBIChiLan1.0ChiLan1.0
CNGA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21230,043,405 - 30,074,910 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A30,046,167 - 30,077,672 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,911,053 - 100,962,278 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,259,808 - 99,308,524 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A99,259,808 - 99,308,517 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
CNGA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,232,716 - 44,278,555 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1044,234,004 - 44,260,746 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1044,156,508 - 44,183,215 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01045,105,862 - 45,150,463 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1045,104,784 - 45,151,081 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,817,459 - 44,844,164 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01045,108,283 - 45,135,227 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01045,284,117 - 45,310,870 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cnga3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11237,572,212 - 37,612,393 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440629284,246,488 - 84,286,560 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367441,514,821 - 1,540,580 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367441,499,431 - 1,537,784 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNGA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,874,250 - 55,922,979 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1355,872,607 - 55,936,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2358,478,654 - 58,496,156 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNGA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11499,091,254 - 99,177,199 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666041169,587,189 - 169,645,494 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1142,039,281 - 2,124,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,096,232 - 2,123,231 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Cnga3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247493,458,997 - 3,482,697 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247493,458,991 - 3,483,003 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_032899516   ⟹   XP_032755407
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v14113,421,744 - 113,463,441 (+)NCBI
RefSeq Acc Id: XM_032899517   ⟹   XP_032755408
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v14113,421,744 - 113,463,441 (+)NCBI
RefSeq Acc Id: XM_032899518   ⟹   XP_032755409
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v14113,444,732 - 113,463,733 (+)NCBI
Protein Sequences
Protein RefSeqs XP_032755407 (Get FASTA)   NCBI Sequence Viewer  
  XP_032755408 (Get FASTA)   NCBI Sequence Viewer  
  XP_032755409 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_032755407   ⟸   XM_032899516
- Peptide Label: isoform X1
RefSeq Acc Id: XP_032755408   ⟸   XM_032899517
- Peptide Label: isoform X2
RefSeq Acc Id: XP_032755409   ⟸   XM_032899518
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene Cnga3 ENTREZGENE