Npy1r (neuropeptide Y receptor Y1) - Rat Genome Database

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Gene: Npy1r (neuropeptide Y receptor Y1) Rattus norvegicus
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Symbol: Npy1r
Name: neuropeptide Y receptor Y1
RGD ID: 3198
Description: Predicted to enable neuropeptide binding activity; pancreatic polypeptide receptor activity; and peptide YY receptor activity. Involved in several processes, including positive regulation of cholesterol biosynthetic process; regulation of presynaptic cytosolic calcium ion concentration; and regulation of secretion by cell. Located in axon and synaptic vesicle. Is active in glutamatergic synapse; neuronal dense core vesicle; and presynaptic membrane. Used to study absence epilepsy; anxiety disorder; depressive disorder; and hypertension. Biomarker of obesity. Human ortholog(s) of this gene implicated in amphetamine abuse; cocaine abuse; heroin dependence; nicotine dependence; and opiate dependence. Orthologous to human NPY1R (neuropeptide Y receptor Y1); INTERACTS WITH 17beta-estradiol; 1D-myo-inositol 1,4,5-trisphosphate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FC5; MGC109393; Neuropepetide Y1 Receptor; neuropeptide Y receptor type 1; neuropeptide Y1 receptor; NPY-1; NPY1-R
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81627,804,416 - 27,814,070 (-)NCBIGRCr8
mRatBN7.21623,037,788 - 23,047,330 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1623,037,789 - 23,046,759 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1626,400,898 - 26,409,918 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01629,835,589 - 29,844,607 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01625,766,507 - 25,775,523 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01624,779,480 - 24,789,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1624,779,477 - 24,788,740 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01624,663,045 - 24,672,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41624,747,183 - 24,756,507 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11624,748,298 - 24,749,803 (-)NCBI
Celera1623,162,089 - 23,171,059 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Npy1rRatabsence epilepsy treatmentIMP 10448963 RGD 
Npy1rRatalcohol withdrawal syndrome  IEP 10448926mRNA:decreased expression:hippocampus and cerebral cortex (rat)RGD 
Npy1rRatamphetamine abuse  ISONPY1R (Homo sapiens)402463941DNA:SNP:intron: (rs7687423) (human)RGD 
Npy1rRatAnorexia  IEP 10448965associated with Neoplasms more ...RGD 
Npy1rRatanxiety disorder treatmentIDA 10448284 RGD 
Npy1rRatatherosclerosis  ISONpy1r (Mus musculus)10448273 RGD 
Npy1rRatBinge Drinking amelioratesISONpy1r (Mus musculus)402463940 RGD 
Npy1rRatBinge Drinking  ISONpy1r (Mus musculus)405096664protein:decreased expression:central amygdaloid nucleus (mouse)RGD 
Npy1rRatcocaine abuse susceptibilityISONPY1R (Homo sapiens)402463938DNA:SNP:intron: (rs4518200) (human)RGD 
Npy1rRatDehydration  IEP 1642311protein:increased expression:hypothalamusRGD 
Npy1rRatdepressive disorder treatmentIDA 10448284 RGD 
Npy1rRatdepressive disorder treatmentIDA 10448937 RGD 
Npy1rRatdepressive disorder  IMP 1642308 RGD 
Npy1rRatExperimental Diabetes Mellitus  IEP 10448967 RGD 
Npy1rRatExperimental Seizures  IEP 1642320mRNA:decreased expression:brainRGD 
Npy1rRatheroin dependence  ISONPY1R (Homo sapiens)401976498DNA:SNP:intron: (rs4518200) (human)RGD 
Npy1rRatheroin dependence susceptibilityISONPY1R (Homo sapiens)402463944DNA:SNP and haplotype:intron: (rs4234955) (human)RGD 
Npy1rRathypertension  IMP 1357410 RGD 
Npy1rRatMyocardial Reperfusion Injury  IEP 1642307mRNA:decreased expression:heart left ventricleRGD 
Npy1rRatnicotine dependence  ISONPY1R (Homo sapiens)402463945DNA:SNP and haplotype:exon: (rs10033119) (human)RGD 
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Original Reference(s)
Npy1rRatamphetamine abuse  ISONPY1R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19566775
Npy1rRatanxiety disorder  ISONPY1R (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:11440811
Npy1rRatdepressive disorder  ISONPY1R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:9729278
Npy1rRatneural tube defect  ISONPY1R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17400914
Npy1rRatobesity  ISONPY1R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20975297
Npy1rRatsubstance-induced psychosis  ISONPY1R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19566775
Npy1rRatToothache  ISONPY1R (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:18809749
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Original Reference(s)
Npy1rRatobesity  ISSNpy1r (Mus musculus)13592920OMIM:601665MouseDO 

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Original Reference(s)
Npy1rRat1,2-dichloroethane increases expressionISONpy1r (Mus musculus)6480464ethylene dichloride results in increased expression of NPY1R mRNACTDPMID:28189721 and PMID:28960355
Npy1rRat17alpha-ethynylestradiol affects expressionISONpy1r (Mus musculus)6480464Ethinyl Estradiol affects the expression of NPY1R mRNACTDPMID:17555576
Npy1rRat17beta-estradiol multiple interactionsISONPY1R (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of NPY1R mRNA more ...CTDPMID:19146866 more ...
Npy1rRat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of NPY1R mRNACTDPMID:26496021
Npy1rRat17beta-estradiol increases expressionISONPY1R (Homo sapiens)6480464Estradiol results in increased expression of NPY1R mRNACTDPMID:19146866 more ...
Npy1rRat1D-myo-inositol 1,4,5-trisphosphate affects abundanceEXP 6480464NPY1R protein affects the abundance of Inositol 1 more ...CTDPMID:7742479
Npy1rRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISONPY1R (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of NPY1R mRNA and Cycloheximide inhibits the reaction [Tetrachlorodibenzodioxin results in decreased expression of NPY1R mRNA]CTDPMID:11007951 and PMID:19619570
Npy1rRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of NPY1R mRNACTDPMID:33387578
Npy1rRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISONPY1R (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of NPY1R mRNACTDPMID:11007951 more ...
Npy1rRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISONpy1r (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of NPY1R mRNACTDPMID:19933214
Npy1rRat2,4,6-trinitrobenzenesulfonic acid increases expressionEXP 6480464Trinitrobenzenesulfonic Acid results in increased expression of NPY1R mRNACTDPMID:23537331
Npy1rRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISONpy1r (Mus musculus)64804642 more ...CTDPMID:38648751
Npy1rRat2-methyl-4-chlorophenoxybutyric acid multiple interactionsEXP 6480464[2-amino-3-chloro-1 and 4-naphthoquinone co-treated with Ziram co-treated with cyromazine co-treated with 2-methyl-4-chlorophenoxy gamma-butyric acid co-treated with pirimicarb co-treated with Thiram] results in increased expression of NPY1R mRNACTDPMID:29321614
Npy1rRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of NPY1R mRNACTDPMID:24780913
Npy1rRatacrylamide increases expressionISONPY1R (Homo sapiens)6480464Acrylamide results in increased expression of NPY1R mRNACTDPMID:32763439
Npy1rRatafimoxifene multiple interactionsISONPY1R (Homo sapiens)6480464afimoxifene inhibits the reaction [Estrogens results in increased expression of NPY1R mRNA]CTDPMID:21233418
Npy1rRataflatoxin B1 affects expressionISONPY1R (Homo sapiens)6480464Aflatoxin B1 affects the expression of NPY1R proteinCTDPMID:20106945
Npy1rRataflatoxin B1 decreases methylationISONPY1R (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of NPY1R geneCTDPMID:27153756
Npy1rRataflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of NPY1R mRNACTDPMID:23630614
Npy1rRatall-trans-retinoic acid increases expressionISONPY1R (Homo sapiens)6480464Tretinoin results in increased expression of NPY1R mRNACTDPMID:21934132

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Biological Process
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Npy1rRatcell communication involved_inIEAARBA:ARBA000289451600115GO_REF:0000117UniProtGO_REF:0000117
Npy1rRatfeeding behavior acts_upstream_of_or_withinISONpy1r (Mus musculus)1624291MGI:2158689 more ...RGDPMID:10698177 and PMID:9623984
Npy1rRatfeeding behavior acts_upstream_of_or_withinIEAUniProtKB:Q04573 and ensembl:ENSMUSP000001484171600115GO_REF:0000107EnsemblGO_REF:0000107
Npy1rRatfeeding behavior NOT|acts_upstream_of_or_withinISONpy1r (Mus musculus)1624291MGI:2158702 PMID:9861026RGDPMID:9861026
Npy1rRatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Npy1rRatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 and InterPro:IPR0003511600115GO_REF:0000002InterProGO_REF:0000002
Npy1rRatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Npy1rRatglucose metabolic process acts_upstream_of_or_withinISONpy1r (Mus musculus)1624291MGI:2158702 PMID:9861026RGDPMID:9861026
Npy1rRatglucose metabolic process acts_upstream_of_or_withinIEAUniProtKB:Q04573 and ensembl:ENSMUSP000001484171600115GO_REF:0000107EnsemblGO_REF:0000107
Npy1rRatlocomotory behavior acts_upstream_of_or_withinIEAUniProtKB:Q04573 and ensembl:ENSMUSP000001484171600115GO_REF:0000107EnsemblGO_REF:0000107
Npy1rRatlocomotory behavior acts_upstream_of_or_withinISONpy1r (Mus musculus)1624291MGI:2158699 PMID:9623984RGDPMID:9623984
Npy1rRatnegative regulation of cytosolic calcium ion concentration  IMP 1642310 RGD 
Npy1rRatnegative regulation of hormone secretion  IMP 1642321 RGD 
Npy1rRatneuropeptide signaling pathway involved_inIEAGO:00049831600115GO_REF:0000108GOCGO_REF:0000108
Npy1rRatneuropeptide signaling pathway involved_inIEAGO:00081881600115GO_REF:0000108GOCGO_REF:0000108
Npy1rRatoutflow tract morphogenesis involved_inISONPY1R (Homo sapiens)1624291 PMID:19593212RGDPMID:19593212
Npy1rRatperistalsis  IMP 1642317 RGD 
Npy1rRatpositive regulation of cholesterol biosynthetic process  IMP 405096663 RGD 
Npy1rRatpositive regulation of vasoconstriction  IMP 1642323 RGD 
Npy1rRatregulation of blood pressure acts_upstream_of_or_withinISONpy1r (Mus musculus)1624291MGI:2158699 PMID:9623984RGDPMID:9623984
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Cellular Component
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Original Reference(s)
Npy1rRataxon  IDA 1642318 RGD 
Npy1rRatglutamatergic synapse is_active_inIDA 155230737PMID:11677256SynGO 
Npy1rRatglutamatergic synapse is_active_inEXP 155230737PMID:11677256SynGO 
Npy1rRatmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Npy1rRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Npy1rRatmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Npy1rRatneuron projection is_active_inIBAMGI:108082 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Npy1rRatneuronal dense core vesicle is_active_inIDA 155230710PMID:29775703SynGO 
Npy1rRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Npy1rRatplasma membrane is_active_inIBAFB:FBgn0036934 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Npy1rRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Npy1rRatpresynaptic membrane is_active_inIDA 1642318PMID:11891789SynGO 
Npy1rRatsynaptic vesicle  IDA 1642318 RGD 
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Molecular Function
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Original Reference(s)
Npy1rRatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Npy1rRatG protein-coupled receptor activity enablesIEAInterPro:IPR0002761600115GO_REF:0000002InterProGO_REF:0000002
Npy1rRatneuropeptide binding enablesIBAPANTHER:PTN001203571 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Npy1rRatneuropeptide receptor activity enablesIBAFB:FBgn0036934 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Npy1rRatneuropeptide Y receptor activity enablesIEAInterPro:IPR0003511600115GO_REF:0000002InterProGO_REF:0000002
Npy1rRatneuropeptide Y receptor activity enablesISONpy1r (Mus musculus)1624291 PMID:10698177RGDPMID:10698177
Npy1rRatneuropeptide Y receptor activity enablesIEAUniProtKB:Q04573 and ensembl:ENSMUSP000001484171600115GO_REF:0000107EnsemblGO_REF:0000107
Npy1rRatneuropeptide Y receptor activity enablesIEAInterPro:IPR000351 and InterPro:IPR0006111600115GO_REF:0000002InterProGO_REF:0000002
Npy1rRatpancreatic polypeptide receptor activity enablesISONpy1r (Mus musculus)1624291 PMID:10698177RGDPMID:10698177
Npy1rRatpancreatic polypeptide receptor activity enablesIEAUniProtKB:Q04573 and ensembl:ENSMUSP000001484171600115GO_REF:0000107EnsemblGO_REF:0000107
Npy1rRatpeptide YY receptor activity enablesISONpy1r (Mus musculus)1624291 PMID:10698177RGDPMID:10698177
Npy1rRatpeptide YY receptor activity enablesIEAUniProtKB:Q04573 and ensembl:ENSMUSP000001484171600115GO_REF:0000107EnsemblGO_REF:0000107
Npy1rRatprotein binding enablesISONPY1R (Homo sapiens)1624291UniProtKB:P10082 and PMID:23597562RGDPMID:23597562
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#
Reference Title
Reference Citation
1. NPY modulates epinephrine-induced leukocytosis via Y-1 and Y-5 receptor activation in vivo: sympathetic co-transmission during leukocyte mobilization. Bedoui S, etal., J Neuroimmunol 2002 Nov;132(1-2):25-33.
2. The antidepressant effects of running and escitalopram are associated with levels of hippocampal NPY and Y1 receptor but not cell proliferation in a rat model of depression. Bjornebekk A, etal., Hippocampus. 2010 Jul;20(7):820-8. doi: 10.1002/hipo.20683.
3. The effect of cardiac ischemic preconditioning on rat left ventricular gene expression profile. Canatan H Cell Biochem Funct. 2007 Jun 11;.
4. Alteration of NPY and Y1 receptor in dorsomedial and ventromedial areas of hypothalamus in anorectic tumor-bearing rats. Chance WT, etal., Peptides. 2007 Feb;28(2):295-301. Epub 2007 Jan 17.
5. NPY stimulates cholesterol synthesis acutely by activating the SREBP2-HMGCR pathway through the Y1 and Y5 receptors in murine hepatocytes. Chen F, etal., Life Sci. 2020 Dec 1;262:118478. doi: 10.1016/j.lfs.2020.118478. Epub 2020 Sep 22.
6. Neuropeptide Y-Y1 receptor antisense oligodeoxynucleotide increases the infarct volume after middle cerebral artery occlusion in rats. Cheung RT and Cechetto DF, Neuroscience. 2000;98(4):771-7.
7. Expression of neuropeptide Y and its receptors Y1 and Y2 in the rat heart and its supplying autonomic and spinal sensory ganglia in experimentally induced diabetes. Chottova Dvorakova M, etal., Neuroscience. 2008 Feb 19;151(4):1016-28. doi: 10.1016/j.neuroscience.2007.07.069. Epub 2007 Dec 8.
8. Molecular cloning of a novel G protein-coupled receptor that may belong to the neuropeptide receptor family. Eva C, etal., FEBS Lett 1990 Oct 1;271(1-2):81-4.
9. Neuropeptide Y1 and Y5 receptors mediate the effects of neuropeptide Y on the hypothalamic-pituitary-thyroid axis. Fekete C, etal., Endocrinology 2002 Dec;143(12):4513-9.
10. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
11. Neuropeptide Y inhibits capsaicin-sensitive nociceptors via a Y1-receptor-mediated mechanism. Gibbs J, etal., Neuroscience. 2004;125(3):703-9.
12. Neuropeptide Y modulates effects of bradykinin and prostaglandin E2 on trigeminal nociceptors via activation of the Y1 and Y2 receptors. Gibbs JL, etal., Br J Pharmacol. 2007 Jan;150(1):72-9. Epub 2006 Dec 4.
13. Ultrastructural localization of neuropeptide Y Y1 receptors in the rat medial nucleus tractus solitarius: relationships with neuropeptide Y or catecholamine neurons. Glass MJ, etal., J Neurosci Res. 2002 Mar 15;67(6):753-65.
14. Physiological role of neuropeptide Y in the regulation of the ascending phase of the peristaltic reflex. Grider JR and Langdon LE, Am J Physiol Gastrointest Liver Physiol. 2003 Dec;285(6):G1139-46. Epub 2003 Aug 14.
15. Estrogen Induces Neuropeptide Y (NPY) Y1 receptor gene expression and responsiveness to NPY in gonadotrope-enriched pituitary cell cultures. Hill JW, etal., Endocrinology. 2004 May;145(5):2283-90. Epub 2004 Jan 15.
16. Neuropeptide y and neuropeptide y y5 receptor interaction restores impaired growth potential of aging bone marrow stromal cells. Igura K, etal., Rejuvenation Res. 2011 Aug;14(4):393-403. doi: 10.1089/rej.2010.1129. Epub 2011 May 19.
17. Infusion of neuropeptide Y into CA3 region of hippocampus produces antidepressant-like effect via Y1 receptor. Ishida H, etal., Hippocampus. 2007;17(4):271-80.
18. Electroconvulsive stimuli selectively affect behavior and neuropeptide Y (NPY) and NPY Y(1) receptor gene expressions in hippocampus and hypothalamus of Flinders Sensitive Line rat model of depression. Jiménez-Vasquez PA, etal., Eur Neuropsychopharmacol. 2007 Mar;17(4):298-308. doi: 10.1016/j.euroneuro.2006.06.011. Epub 2006 Aug 9.
19. Differential regulation of mRNAs for neuropeptide Y and its receptor subtypes in widespread areas of the rat limbic system during kindling epileptogenesis. Kopp J, etal., Brain Res Mol Brain Res. 1999 Sep 8;72(1):17-29.
20. Obesity and mild hyperinsulinemia found in neuropeptide Y-Y1 receptor-deficient mice. Kushi A, etal., Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15659-64.
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PMID:9623984   PMID:10698177   PMID:11206547   PMID:12429884   PMID:12477932   PMID:12535945   PMID:12855401   PMID:12900925   PMID:14615027   PMID:14688445   PMID:15044185   PMID:15123022  
PMID:15295007   PMID:15544855   PMID:15576634   PMID:15623437   PMID:15690487   PMID:15720710   PMID:16051880   PMID:16448775   PMID:17463058   PMID:17510186   PMID:18323405   PMID:18535365  
PMID:19138726   PMID:19593212   PMID:19731317   PMID:20219870   PMID:20536577   PMID:21629996   PMID:22210742   PMID:22659471   PMID:22713926   PMID:22732442   PMID:23052195   PMID:23071607  
PMID:23074243   PMID:23179670   PMID:23548582   PMID:23825421   PMID:24225225   PMID:24444822   PMID:24779394   PMID:25241802   PMID:26330345   PMID:26490304   PMID:26666529   PMID:28239793  
PMID:28438668   PMID:29157796   PMID:30227410   PMID:30700376   PMID:31076578   PMID:31622603   PMID:38622072  



Npy1r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81627,804,416 - 27,814,070 (-)NCBIGRCr8
mRatBN7.21623,037,788 - 23,047,330 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1623,037,789 - 23,046,759 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1626,400,898 - 26,409,918 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01629,835,589 - 29,844,607 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01625,766,507 - 25,775,523 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01624,779,480 - 24,789,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1624,779,477 - 24,788,740 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01624,663,045 - 24,672,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41624,747,183 - 24,756,507 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11624,748,298 - 24,749,803 (-)NCBI
Celera1623,162,089 - 23,171,059 (-)NCBICelera
Cytogenetic Map16p14NCBI
NPY1R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384163,323,962 - 163,344,689 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4163,323,962 - 163,344,832 (-)EnsemblGRCh38hg38GRCh38
GRCh374164,245,114 - 164,253,748 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364164,464,567 - 164,473,198 (-)NCBINCBI36Build 36hg18NCBI36
Build 344164,602,721 - 164,611,353NCBI
Celera4161,577,336 - 161,585,966 (-)NCBICelera
Cytogenetic Map4q32.2NCBI
HuRef4159,999,060 - 160,008,005 (-)NCBIHuRef
CHM1_14164,221,563 - 164,230,393 (-)NCBICHM1_1
T2T-CHM13v2.04166,671,793 - 166,692,717 (-)NCBIT2T-CHM13v2.0
Npy1r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39867,149,595 - 67,159,452 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl867,149,844 - 67,159,444 (+)EnsemblGRCm39 Ensembl
GRCm38866,697,149 - 66,706,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl866,697,192 - 66,706,792 (+)EnsemblGRCm38mm10GRCm38
MGSCv37869,221,321 - 69,230,697 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36869,632,837 - 69,635,097 (+)NCBIMGSCv36mm8
Celera869,251,576 - 69,260,940 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map833.15NCBI
Npy1r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540341,681,728 - 41,694,020 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540341,681,834 - 41,693,094 (+)NCBIChiLan1.0ChiLan1.0
NPY1R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23161,132,638 - 161,153,546 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14161,495,180 - 161,516,073 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04155,583,870 - 155,604,336 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14167,372,306 - 167,392,716 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4167,372,310 - 167,381,597 (-)Ensemblpanpan1.1panPan2
NPY1R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11559,580,546 - 59,587,753 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1559,580,809 - 59,583,237 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1559,946,494 - 59,947,746 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01560,338,999 - 60,348,168 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1560,339,001 - 60,348,197 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11559,574,468 - 59,575,720 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01559,665,153 - 59,666,405 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01560,034,141 - 60,035,393 (-)NCBIUU_Cfam_GSD_1.0
Npy1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494316,293,825 - 16,314,919 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365552,267,669 - 2,276,778 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365552,267,727 - 2,276,673 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPY1R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl852,152,646 - 52,162,328 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1852,152,649 - 52,163,080 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2855,280,107 - 55,290,551 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NPY1R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17109,774,700 - 109,794,543 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7109,774,918 - 109,776,905 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603789,580,043 - 89,600,565 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Npy1r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475813,536,493 - 13,545,599 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475813,542,467 - 13,545,106 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Npy1r
57 total Variants

Predicted Target Of
Summary Value
Count of predictions:402
Count of miRNA genes:218
Interacting mature miRNAs:258
Transcripts:ENSRNOT00000018952
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat

1 to 10 of 27 rows
UniSTS:256984  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21623,039,172 - 23,039,540 (+)MAPPERmRatBN7.2
Rnor_6.01624,780,864 - 24,781,231NCBIRnor6.0
Rnor_5.01624,664,429 - 24,664,796UniSTSRnor5.0
RGSC_v3.41624,748,567 - 24,748,934UniSTSRGSC3.4
Celera1623,163,473 - 23,163,840UniSTS
Cytogenetic Map16p14UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 43 109 62 61 30 25 30 6 183 91 89 45 58 31



Ensembl Acc Id: ENSRNOT00000018952   ⟹   ENSRNOP00000018952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1623,037,789 - 23,046,759 (-)Ensembl
Rnor_6.0 Ensembl1624,779,477 - 24,788,740 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079412   ⟹   ENSRNOP00000068980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1623,037,790 - 23,046,759 (-)Ensembl
Rnor_6.0 Ensembl1624,779,481 - 24,788,456 (-)Ensembl
RefSeq Acc Id: NM_001113357   ⟹   NP_001106828
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81627,804,416 - 27,813,387 (-)NCBI
mRatBN7.21623,037,789 - 23,046,759 (-)NCBI
Rnor_6.01624,779,480 - 24,788,456 (-)NCBI
Rnor_5.01624,663,045 - 24,672,508 (-)NCBI
RGSC_v3.41624,747,183 - 24,756,507 (-)RGD
Celera1623,162,089 - 23,171,059 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253024   ⟹   XP_006253086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81627,804,416 - 27,814,070 (-)NCBI
mRatBN7.21623,037,788 - 23,047,330 (-)NCBI
Rnor_6.01624,779,480 - 24,789,131 (-)NCBI
Rnor_5.01624,663,045 - 24,672,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253025   ⟹   XP_006253087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81627,804,416 - 27,814,070 (-)NCBI
mRatBN7.21623,037,788 - 23,047,330 (-)NCBI
Rnor_6.01624,779,480 - 24,789,131 (-)NCBI
Rnor_5.01624,663,045 - 24,672,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063275269   ⟹   XP_063131339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81627,804,416 - 27,814,066 (-)NCBI
1 to 10 of 10 rows
Protein RefSeqs NP_001106828 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253086 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253087 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131339 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89981 (Get FASTA)   NCBI Sequence Viewer  
  EDL75957 (Get FASTA)   NCBI Sequence Viewer  
  EDL75958 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018952
  ENSRNOP00000068980
GenBank Protein P21555 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_001106828   ⟸   NM_001113357
- UniProtKB: P21555 (UniProtKB/Swiss-Prot),   G3V7T1 (UniProtKB/TrEMBL),   A6KFL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253087   ⟸   XM_006253025
- Peptide Label: isoform X1
- UniProtKB: P21555 (UniProtKB/Swiss-Prot),   G3V7T1 (UniProtKB/TrEMBL),   A6KFL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253086   ⟸   XM_006253024
- Peptide Label: isoform X1
- UniProtKB: P21555 (UniProtKB/Swiss-Prot),   G3V7T1 (UniProtKB/TrEMBL),   A6KFL5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068980   ⟸   ENSRNOT00000079412
Ensembl Acc Id: ENSRNOP00000018952   ⟸   ENSRNOT00000018952
Name Modeler Protein Id AA Range Protein Structure
AF-P21555-F1-model_v2 AlphaFold P21555 1-382 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-11662 BioCyc
Ensembl Genes ENSRNOG00000014149 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000018952 ENTREZGENE
  ENSRNOT00000079412 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7317839 IMAGE-MGC_LOAD
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  NPY1_rcpt UniProtKB/Swiss-Prot
  NPY_rcpt UniProtKB/Swiss-Prot
MGC_CLONE MGC:109393 IMAGE-MGC_LOAD
NCBI Gene 29358 ENTREZGENE
PANTHER NEUROPEPTIDE Y RECEPTOR UniProtKB/Swiss-Prot
  PTHR24235:SF24 UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PhenoGen Npy1r PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  NRPEPTIDEY1R UniProtKB/Swiss-Prot
  NRPEPTIDEYR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014149 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt A6KFL5 ENTREZGENE, UniProtKB/TrEMBL
  G3V7T1 ENTREZGENE, UniProtKB/TrEMBL
  NPY1R_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5FVH5 ENTREZGENE, UniProtKB/TrEMBL
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-11-06 Npy1r  neuropeptide Y receptor Y1    neuropeptide Y1 receptor  Name updated 625702 APPROVED
2002-06-10 Npy1r  neuropeptide Y1 receptor      Name updated 70584 APPROVED

Note Type Note Reference
gene_expression expressed in thalamus, cerebral cortex and hippocampus 69907