Npy1r (neuropeptide Y receptor Y1)

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Gene: Npy1r (neuropeptide Y receptor Y1) Rattus norvegicus

Analyze

Symbol:

Npy1r

Name:

neuropeptide Y receptor Y1

RGD ID:

3198

Description:

Predicted to have pancreatic polypeptide receptor activity and peptide YY receptor activity. Involved in several processes, including negative regulation of cytosolic calcium ion concentration; peristalsis; and positive regulation of vasoconstriction. Localizes to several cellular components, including axon; cytosol; and synaptic vesicle. Used to study anxiety disorder; childhood absence epilepsy; hypertension; and mental depression. Biomarker of obesity and visual epilepsy. Orthologous to human NPY1R (neuropeptide Y receptor Y1); INTERACTS WITH 17beta-estradiol; 1D-myo-inositol 1,4,5-trisphosphate; 2,4,6-trinitrobenzenesulfonic acid.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

FC5; MGC109393; Neuropepetide Y1 Receptor; neuropeptide Y receptor type 1; neuropeptide Y1 receptor; NPY-1; NPY1-R

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NPY1R (neuropeptide Y receptor Y1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Npy1r (neuropeptide Y receptor Y1)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Npy1r (neuropeptide Y receptor Y1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NPY1R (neuropeptide Y receptor Y1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NPY1R (neuropeptide Y receptor Y1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Npy1r (neuropeptide Y receptor Y1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NPY1R (neuropeptide Y receptor Y1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	NPY1R (neuropeptide Y receptor Y1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Npy1r (neuropeptide Y receptor Y1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Npy1r (neuropeptide Y receptor Y1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	NPY1R (neuropeptide Y receptor Y1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	npy1r (neuropeptide Y receptor Y1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	NPFR	Alliance	DIOPT (InParanoid\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	23,037,788 - 23,047,330 (-)	NCBI
Rnor_6.0 Ensembl	16	24,779,477 - 24,788,740 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	24,779,480 - 24,789,131 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	24,663,045 - 24,672,508 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	24,747,183 - 24,756,507 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	24,748,298 - 24,749,803 (-)	NCBI
Celera	16	23,162,089 - 23,171,059 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amphetamine abuse (ISO)

Anorexia (IEP)

anxiety disorder (IDA,ISO)

atherosclerosis (ISO)

childhood absence epilepsy (IDA)

Dehydration (IEP)

Experimental Diabetes Mellitus (IEP)

hypertension (IMP)

mental depression (IDA,IMP,ISO)

Myocardial Reperfusion Injury (IEP)

neural tube defect (ISO)

obesity (IEP,ISO)

peripheral artery disease (ISO)

Stroke (IMP)

substance-induced psychosis (ISO)

temporal lobe epilepsy (ISO)

Toothache (ISO)

visual epilepsy (IEP)

Wallerian Degeneration (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

1D-myo-inositol 1,4,5-trisphosphate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,6-trinitrobenzenesulfonic acid (EXP)

2-methyl-4-chlorophenoxybutyric acid (EXP)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

afimoxifene (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

all-trans-retinol (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

capsaicin (EXP)

carbon nanotube (ISO)

chrysene (ISO)

coumestrol (ISO)

cycloheximide (ISO)

cyclosporin A (ISO)

cyromazine (EXP)

dexamethasone (ISO)

dextran sulfate (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

dorsomorphin (ISO)

Enterolactone (ISO)

fluoxetine (EXP)

genistein (EXP,ISO)

ifosfamide (ISO)

ketamine (EXP)

lead diacetate (EXP)

medroxyprogesterone acetate (ISO)

mercury dichloride (EXP)

methamphetamine (ISO)

methylmercury chloride (ISO)

morphine (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

O-methyleugenol (ISO)

panobinostat (ISO)

pentobarbital (ISO)

phenylmercury acetate (ISO)

phenylpropanolamine (EXP)

phorbol 13-acetate 12-myristate (ISO)

picrotoxin (EXP)

pioglitazone (ISO)

pirimicarb (EXP)

progesterone (ISO)

raloxifene (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

tetraphene (ISO)

thiram (EXP)

titanium dioxide (ISO)

tribromoethanol (ISO)

trichostatin A (ISO)

trifluoroacetic acid (EXP)

triptonide (ISO)

valproic acid (ISO)

ziram (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aging (IEP)

feeding behavior (ISO)

glucose metabolic process (ISO)

locomotory behavior (ISO)

negative regulation of cytosolic calcium ion concentration (IMP)

negative regulation of hormone secretion (IMP)

neuropeptide signaling pathway (IEA)

outflow tract morphogenesis (IEA,ISO)

peristalsis (IMP)

positive regulation of vasoconstriction (IMP)

regulation of blood pressure (ISO)

regulation of multicellular organism growth (ISO)

response to estradiol (IEP)

sensory perception of pain (IMP,ISO)

Cellular Component

axon (IDA)

cytosol (IDA)

integral component of membrane (IEA)

plasma membrane (IDA,IEA)

synaptic vesicle (IDA)

Molecular Function

molecular_function (ND)

neuropeptide Y receptor activity (IEA,ISO)

pancreatic polypeptide receptor activity (IBA,ISO)

peptide YY receptor activity (ISO)

protein binding (ISO)

References

References - curated


1.	Bedoui S, etal., J Neuroimmunol 2002 Nov;132(1-2):25-33.
2.	Bjornebekk A, etal., Hippocampus. 2010 Jul;20(7):820-8. doi: 10.1002/hipo.20683.
3.	Canatan H Cell Biochem Funct. 2007 Jun 11;.
4.	Chance WT, etal., Peptides. 2007 Feb;28(2):295-301. Epub 2007 Jan 17.
5.	Cheung RT and Cechetto DF, Neuroscience. 2000;98(4):771-7.
6.	Chottova Dvorakova M, etal., Neuroscience. 2008 Feb 19;151(4):1016-28. doi: 10.1016/j.neuroscience.2007.07.069. Epub 2007 Dec 8.
7.	Eva C, etal., FEBS Lett 1990 Oct 1;271(1-2):81-4.
8.	Fekete C, etal., Endocrinology 2002 Dec;143(12):4513-9.
9.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
10.	Gibbs J, etal., Neuroscience. 2004;125(3):703-9.
11.	Gibbs JL, etal., Br J Pharmacol. 2007 Jan;150(1):72-9. Epub 2006 Dec 4.
12.	Glass MJ, etal., J Neurosci Res. 2002 Mar 15;67(6):753-65.
13.	Grider JR and Langdon LE, Am J Physiol Gastrointest Liver Physiol. 2003 Dec;285(6):G1139-46. Epub 2003 Aug 14.
14.	Hill JW, etal., Endocrinology. 2004 May;145(5):2283-90. Epub 2004 Jan 15.
15.	Igura K, etal., Rejuvenation Res. 2011 Aug;14(4):393-403. doi: 10.1089/rej.2010.1129. Epub 2011 May 19.
16.	Ishida H, etal., Hippocampus. 2007;17(4):271-80.
17.	Kopp J, etal., Brain Res Mol Brain Res. 1999 Sep 8;72(1):17-29.
18.	Kushi A, etal., Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15659-64.
19.	Li L, etal., J Cardiovasc Transl Res. 2011 Jun;4(3):351-62. doi: 10.1007/s12265-011-9271-5. Epub 2011 Apr 6.
20.	MGD data from the GO Consortium
21.	Michalkiewicz M, etal., Hypertension 2005 Apr;45(4):780-5. Epub 2005 Feb 7.
22.	Morales-Medina JC, etal., Neuropharmacology. 2012 Jan;62(1):200-8. doi: 10.1016/j.neuropharm.2011.06.030. Epub 2011 Jul 23.
23.	Morris MJ, etal., Eur J Neurosci. 2007 Feb;25(4):1136-43.
24.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
25.	Neveu I, etal., Neuroscience 2002;113(4):767-77.
26.	Pesini P, etal., Brain Res. 1999 May 15;828(1-2):41-59.
27.	Prieto D, etal., Regul Pept. 1998 Sep 25;75-76:155-60.
28.	RGD automated data pipeline
29.	RGD automated import pipeline for gene-chemical interactions
30.	RGD comprehensive gene curation
31.	Silveira NA and Franci CR, Braz J Med Biol Res. 1999 Sep;32(9):1161-5.
32.	Sorensen G, etal., J Neurosci Res. 2004 Sep 1;77(5):723-9.
33.	Urban JH, etal., Endocrinology. 2006 Sep;147(9):4122-31. Epub 2006 May 25.
34.	Vezzani A and Sperk G, Neuropeptides. 2004 Aug;38(4):245-52.
35.	Wang C, etal., Horm Metab Res. 2007 Apr;39(4):262-7.

Additional References at PubMed

PMID:9623984	PMID:10698177	PMID:11206547	PMID:12429884	PMID:12477932	PMID:12535945	PMID:12855401	PMID:12900925	PMID:14615027	PMID:14688445	PMID:15044185	PMID:15123022
PMID:15295007	PMID:15544855	PMID:15576634	PMID:15623437	PMID:15690487	PMID:15720710	PMID:16051880	PMID:16448775	PMID:17463058	PMID:17510186	PMID:18323405	PMID:18535365
PMID:19138726	PMID:19593212	PMID:19731317	PMID:20219870	PMID:20536577	PMID:21629996	PMID:22210742	PMID:22659471	PMID:22713926	PMID:22732442	PMID:23052195	PMID:23071607
PMID:23074243	PMID:23179670	PMID:23548582	PMID:23825421	PMID:24225225	PMID:24444822	PMID:24779394	PMID:25241802	PMID:26330345	PMID:26490304	PMID:26666529	PMID:28239793
PMID:28438668	PMID:29157796	PMID:30227410	PMID:30700376	PMID:31076578	PMID:31622603

Genomics

Comparative Map Data

Npy1r
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	23,037,788 - 23,047,330 (-)	NCBI
Rnor_6.0 Ensembl	16	24,779,477 - 24,788,740 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	24,779,480 - 24,789,131 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	24,663,045 - 24,672,508 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	24,747,183 - 24,756,507 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	24,748,298 - 24,749,803 (-)	NCBI
Celera	16	23,162,089 - 23,171,059 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

NPY1R
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	163,323,962 - 163,344,832 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	163,323,962 - 163,344,832 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	164,245,114 - 164,253,748 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	164,464,567 - 164,473,198 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	4	164,602,721 - 164,611,353	NCBI
Celera	4	161,577,336 - 161,585,966 (-)	NCBI
Cytogenetic Map	4	q32.2	NCBI
HuRef	4	159,999,060 - 160,008,005 (-)	NCBI		HuRef
CHM1_1	4	164,221,563 - 164,230,393 (-)	NCBI		CHM1_1

Npy1r
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	67,149,595 - 67,159,452 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	67,149,844 - 67,159,444 (+)	Ensembl
GRCm38	8	66,697,149 - 66,706,800 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	66,697,192 - 66,706,792 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	69,221,321 - 69,230,697 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	69,632,837 - 69,635,097 (+)	NCBI			mm8
Celera	8	69,251,576 - 69,260,940 (+)	NCBI		Celera
Cytogenetic Map	8	B3.1	NCBI
cM Map	8	33.15	NCBI

Npy1r
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	41,681,728 - 41,694,020 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	41,681,834 - 41,693,094 (+)	NCBI	ChiLan1.0	ChiLan1.0

NPY1R
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	167,372,306 - 167,392,716 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	167,372,310 - 167,381,597 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	155,583,870 - 155,604,336 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

NPY1R
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	59,580,546 - 59,587,753 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	59,580,809 - 59,583,237 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	59,946,494 - 59,947,746 (-)	NCBI
ROS_Cfam_1.0	15	60,338,999 - 60,348,168 (-)	NCBI
UMICH_Zoey_3.1	15	59,574,468 - 59,575,720 (-)	NCBI
UNSW_CanFamBas_1.0	15	59,665,153 - 59,666,405 (-)	NCBI
UU_Cfam_GSD_1.0	15	60,034,141 - 60,035,393 (-)	NCBI

Npy1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	16,293,825 - 16,314,919 (-)	NCBI
SpeTri2.0	NW_004936555	2,267,727 - 2,276,673 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NPY1R
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	52,152,651 - 52,162,943 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	52,152,649 - 52,163,080 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	55,280,107 - 55,290,551 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NPY1R
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	109,774,700 - 109,794,543 (-)	NCBI
ChlSab1.1 Ensembl	7	109,774,918 - 109,776,905 (-)	Ensembl

Npy1r
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624758	13,542,467 - 13,545,106 (+)	NCBI

Position Markers

UniSTS:256984

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	23,039,172 - 23,039,540 (+)	MAPPER
Rnor_6.0	16	24,780,864 - 24,781,231	NCBI	Rnor6.0
Rnor_5.0	16	24,664,429 - 24,664,796	UniSTS	Rnor5.0
RGSC_v3.4	16	24,748,567 - 24,748,934	UniSTS	RGSC3.4
Celera	16	23,163,473 - 23,163,840	UniSTS
Cytogenetic Map	16	p14	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	27556253	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	27556253	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	27556253	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	31816439	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	33160624	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	34465490	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	41240937	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	41240937	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		hepatic copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	41240957	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	244593	45244593	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	1090054	86162972	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1340741	46340741	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	1550187	49247447	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	1550187	63210301	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1550187	63210301	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	1550187	63210301	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	1550187	63210301	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1728297	46728297	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4136355	45905331	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	16	5013802	45905331	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	5013802	45905331	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	5013802	45905331	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	5013802	50013802	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	5013802	50169318	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	5013802	52144919	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	5013802	64012784	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	19398187	70590230	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	20755556	80316424	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	402
Count of miRNA genes:	218
Interacting mature miRNAs:	258
Transcripts:	ENSRNOT00000018952
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									15
Low	2	13	18	2	18	2	8	11	51	32	36	11	8
Below cutoff	1	24	14	14	1	14			4	3	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001113357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X95507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000018952 ⟹ ENSRNOP00000018952

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	16	24,779,477 - 24,788,740 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079412 ⟹ ENSRNOP00000068980

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	16	24,779,481 - 24,788,456 (-)	Ensembl

RefSeq Acc Id:

NM_001113357 ⟹ NP_001106828

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	23,037,789 - 23,046,759 (-)	NCBI
Rnor_6.0	16	24,779,480 - 24,788,456 (-)	NCBI
Rnor_5.0	16	24,663,045 - 24,672,508 (-)	NCBI
RGSC_v3.4	16	24,747,183 - 24,756,507 (-)	RGD
Celera	16	23,162,089 - 23,171,059 (-)	RGD

Sequence:

show sequence

GGCGAACAGACGGATTCTTTAAAAGAGTATTCAGTTCAAGGGAACGAAGAATTGAGAATTATTT
TTGGTGAATGGATTCAAATAAATGGAATAAGAGACAGCTGAAGATCTGATCCATTTCGAAGAAC
CCTAACAGTCCATTTGTCTAATCCATAACAACAAAACGTAAAAAATGAATTCAACTCTGTTCTC
CAGGGTTGAAAATTACTCAGTTCACTATAATGTCTCAGAGAATTCTCCATTTCTGGCCTTTGAG
AATGATGACTGCCACCTGCCCTTGGCTGTGATATTCACCTTAGCTCTTGCTTATGGGGCTGTGA
TTATTCTTGGGGTCTCTGGAAACCTGGCATTGATCATAATCATCCTAAAACAGAAAGAGATGAG
GAATGTCACCAACATTCTGATCGTGAACCTCTCCTTCTCAGACTTGCTGGTCGCAGTCATGTGT
CTCCCGTTCACCTTTGTGTACACACTGATGGACCACTGGGTCTTCGGGGAGACCATGTGCAAAC
TGAATCCTTTTGTGCAATGCGTCTCCATTACAGTATCCATTTTCTCTCTGGTTCTCATCGCTGT
GGAACGTCATCAGCTAATCATCAACCCAAGAGGGTGGAGACCAAACAATAGACATGCTTACATA
GGCATTACTGTCATTTGGGTACTGGCGGTGGCTTCTTCTCTGCCCTTCGTGATCTATCAAATTC
TGACTGATGAGCCCTTCCAAAATGTATCACTTGCGGCGTTCAAGGACAAGTATGTATGTTTTGA
CAAATTCCCGTCAGACTCTCACAGGCTGTCTTACACGACTCTTCTTCTGGTGCTGCAGTATTTT
GGCCCACTCTGTTTCATATTCATATGCTACTTCAAGATATACGTTCGCTTGAAAAGGAGAAACA
ACATGATGGACAAAATCAGGGACAGTAAGTACAGGTCCAGTGAGACCAAACGAATCAACGTCAT
GCTGCTCTCCATCGTGGTCGCCTTCGCGGTCTGCTGGCTGCCCCTTACCATCTTCAACACTGTG
TTCGACTGGAATCACCAGATCATTGCCACCTGCAACCACAATCTGCTGTTCCTGCTCTGCCACC
TCACGGCCATGATCTCCACCTGCGTCAACCCCATCTTTTATGGATTCCTGAACAAAAATTTCCA
GAGAGACTTGCAGTTCTTCTTCAACTTTTGTGACTTCCGGTCTCGAGACGACGACTACGAGACT
ATAGCCATGTCTACCATGCATACGGACGTGTCCAAGACTTCTTTGAAGCAGGCAAGCCCGGTTG
CATTTAAAAAAATCAGTATGAATGACAATGAAAAAATCTGAAGCTGCTGAGAACATACGGTCCC
AGGCTACATCTGTGGAAAAACAAGCACAGCCTGTCACATGCTTTCATTACCTGTGCTCCCAGGG
AATGGATTGAGGCAGGTTTGGAAAGTCCAGGACATCCTGTGTTGGGTTTTACTGCTTTTGTGAT
GGTTGCCGTGATTACTTGGCAATCTAGATTACTTTGTAATCTATCTGGCAACAGTTTTGACCAG
ACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTGGGTATGTGTG
TGAAATTATCCATAACAAGGAGTCTTATATCGTATTTATTGGAGTGAATTTGTCTGAAGTAATG
TCATGAGCTCACTTCAAAAGCAGTACCTACCTGATATTCTCAAGATAATTAGATTTTCAAGATC
AGATGAGATTTCCAAGACCTTGGACTACCTTCATTCCATGCTAGGCATTATGTTAGTCTGTTAC
AAGGGTGACAGTATACAAAAGTCACCTTTTAGGATGTGCCGGAGCCAAAAGAGAGTCTGAAGTC
ATTTGGCAGTATCTTTTTTCTCTCTCTCTTTTTGAGAGGTCTAGATTTGTTATTCAGCTACAAT
TGAGTCTTGCTTAAGATAAATAAGAAGGCGGCTTTCAGCTGTGTATATATCCGGGCGTTAGGCC
ATTCACAAGAATGAAGTGGCAAAGCAGGTCGCTGATTTCAAAATTCCTCTGACAACCAAAGCAT
TAATTAGTCATTTAATATGTAAACTAGTCTTGCTACAGATAGATAAATTGCATCCAAAGGACTT
GATCATCAAGAGGTTTTTGCATCGCTCATCAGAGCATTCAGCACCATCAAGCTTTCTTGCGCAA
GCACGTGACTCTGAGAGCATTTCTAACTCATACTGCATAGAAACATAAGATGCGTTTTCCATAC
AACAGTGCCTGCATAGTAACTAGTGTTTAACTCTCACCATTTATCCTTCATGGCAGATGACACA
TGGACAATGTTTATGTAGGTACCCTCATCGAACTGGTAACTGTTCCTAAAAATGTCATGTGGCC
AGCCCATCCTAATTTGTATAAACTGTATAACGTGTGGAGTTTTATAATCATATACTATTATATC
ATAGAATACTGAGTAGCCCTGTAATATTAATATATTTACTTTCACATATCTTGTAATCATGATT
TAGACTCAGAAAAGATACTTTGAAGAACAAGAGAGTTTCAATGTATTATATAAAAATGTTGCCT
GTATGTGATTTTAGAAGGGCAAACACTTTCTGTATTAAAACTGGGCTTTTTCAGAGGA

hide sequence

RefSeq Acc Id:

XM_006253024 ⟹ XP_006253086

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	23,037,788 - 23,047,330 (-)	NCBI
Rnor_6.0	16	24,779,480 - 24,789,131 (-)	NCBI
Rnor_5.0	16	24,663,045 - 24,672,508 (-)	NCBI

Sequence:

show sequence

AAATCTGACTCAAATGCATTTTCTTAGTGAGGAGGAAAAAGGCTCAAAGGCTCTCAACGGAGAT
CGCTACTTTGGCTTTTTAAAGGACTTCTTTTTGTTCTCTTAGACTGGGGGAAGTAACTTCTCGG
TACTGGCGTGCGGAATAGTTGAGCGTCACAAGAGCAGCGGCAAACCCATTAGCGGAGGCTTTGC
GGTGAAGTGCATCCATCCCCCTTCCCGTAAATAAGCTCTCCCCTTCATTCTTGACTAGGGCTTA
AAGCTCGGACTCTCGGAGGAAAAGGACTTCGCCACAAGATGGCACTGACCTGCAGACAAAGGAA
ATAGCGGTGGCATTGACTTTTAAAACAGGCTTGTAAATGCGCCTTCCCTGAGTCAAGGACTAGT
GGGGTGAGAGCTCTGTGCGTTCGGGTCTGACAGTGTGGCTTACGTTTATCTGCTTTTCTTTCCA
GAATTCCTAGGCAACGCACATCCGAGGGTTTGAGCAGGAGAAATACCAACAGATCTTTCTTCCC
TCCAGTGACACTCGTCCCGCTTCAACACAGGCGAACAGACGGATTCTTTAAAAGAGTATTCAGT
TCAAGGGAACGAAGAATTGAGAATTATTTTTGGTGAATGGATTCAAATAAATGGAATAAGAGAC
AGCTGAAGATCTGATCCATTTCGAAGAACCCTAACAGTCCATTTGTCTAATCCATAACAACAAA
ACGTAAAAAATGAATTCAACTCTGTTCTCCAGGGTTGAAAATTACTCAGTTCACTATAATGTCT
CAGAGAATTCTCCATTTCTGGCCTTTGAGAATGATGACTGCCACCTGCCCTTGGCTGTGATATT
CACCTTAGCTCTTGCTTATGGGGCTGTGATTATTCTTGGGGTCTCTGGAAACCTGGCATTGATC
ATAATCATCCTAAAACAGAAAGAGATGAGGAATGTCACCAACATTCTGATCGTGAACCTCTCCT
TCTCAGACTTGCTGGTCGCAGTCATGTGTCTCCCGTTCACCTTTGTGTACACACTGATGGACCA
CTGGGTCTTCGGGGAGACCATGTGCAAACTGAATCCTTTTGTGCAATGCGTCTCCATTACAGTA
TCCATTTTCTCTCTGGTTCTCATCGCTGTGGAACGTCATCAGCTAATCATCAACCCAAGAGGGT
GGAGACCAAACAATAGACATGCTTACATAGGCATTACTGTCATTTGGGTACTGGCGGTGGCTTC
TTCTCTGCCCTTCGTGATCTATCAAATTCTGACTGATGAGCCCTTCCAAAATGTATCACTTGCG
GCGTTCAAGGACAAGTATGTATGTTTTGACAAATTCCCGTCAGACTCTCACAGGCTGTCTTACA
CGACTCTTCTTCTGGTGCTGCAGTATTTTGGCCCACTCTGTTTCATATTCATATGCTACTTCAA
GATATACGTTCGCTTGAAAAGGAGAAACAACATGATGGACAAAATCAGGGACAGTAAGTACAGG
TCCAGTGAGACCAAACGAATCAACGTCATGCTGCTCTCCATCGTGGTCGCCTTCGCGGTCTGCT
GGCTGCCCCTTACCATCTTCAACACTGTGTTCGACTGGAATCACCAGATCATTGCCACCTGCAA
CCACAATCTGCTGTTCCTGCTCTGCCACCTCACGGCCATGATCTCCACCTGCGTCAACCCCATC
TTTTATGGATTCCTGAACAAAAATTTCCAGAGAGACTTGCAGTTCTTCTTCAACTTTTGTGACT
TCCGGTCTCGAGACGACGACTACGAGACTATAGCCATGTCTACCATGCATACGGACGTGTCCAA
GACTTCTTTGAAGCAGGCAAGCCCGGTTGCATTTAAAAAAATCAGTATGAATGACAATGAAAAA
ATCTGAAGCTGCTGAGAACATACGGTCCCAGGCTACATCTGTGGAAAAACAAGCACAGCCTGTC
ACATGCTTTCATTACCTGTGCTCCCAGGGAATGGATTGAGGCAGGTTTGGAAAGTCCAGGACAT
CCTGTGTTGGGTTTTACTGCTTTTGTGATGGTTGCCGTGATTACTTGGCAATCTAGATTACTTT
GTAATCTATCTGGCAACAGTTTTGACCAGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCT
GTCTGTCTGTCTGTCTGTGGGTATGTGTGTGAAATTATCCATAACAAGGAGTCTTATATCGTAT
TTATTGGAGTGAATTTGTCTGAAGTAATGTCATGAGCTCACTTCAAAAGCAGTACCTACCTGAT
ATTCTCAAGATAATTAGATTTTCAAGATCAGATGAGATTTCCAAGACCTTGGACTACCTTCATT
CCATGCTAGGCATTATGTTAGTCTGTTACAAGGGTGACAGTATACAAAAGTCACCTTTTAGGAT
GTGCCGGAGCCAAAAGAGAGTCTGAAGTCATTTGGCAGTATCTTTTTTCTCTCTCTCTTTTTGA
GAGGTCTAGATTTGTTATTCAGCTACAATTGAGTCTTGCTTAAGATAAATAAGAAGGCGGCTTT
CAGCTGTGTATATATCCGGGCGTTAGGCCATTCACAAGAATGAAGTGGCAAAGCAGGTCGCTGA
TTTCAAAATTCCTCTGACAACCAAAGCATTAATTAGTCATTTAATATGTAAACTAGTCTTGCTA
CAGATAGATAAATTGCATCCAAAGGACTTGATCATCAAGAGGTTTTTGCATCGCTCATCAGAGC
ATTCAGCACCATCAAGCTTTCTTGCGCAAGCACGTGACTCTGAGAGCATTTCTAACTCATACTG
CATAGAAACATAAGATGCGTTTTCCATACAACAGTGCCTGCATAGTAACTAGTGTTTAACTCTC
ACCATTTATCCTTCATGGCAGATGACACATGGACAATGTTTATGTAGGTACCCTCATCGAACTG
GTAACTGTTCCTAAAAATGTCATGTGGCCAGCCCATCCTAATTTGTATAAACTGTATAACGTGT
GGAGTTTTATAATCATATACTATTATATCATAGAATACTGAGTAGCCCTGTAATATTAATATAT
TTACTTTCACATATCTTGTAATCATGATTTAGACTCAGAAAAGATACTTTGAAGAACAAGAGAG
TTTCAATGTATTATATAAAAATGTTGCCTGTATGTGATTTTAGAAGGGCAAACACTTTCTGTAT
TAAAACTGGGCTTTTTCAGAGGA

hide sequence

RefSeq Acc Id:

XM_006253025 ⟹ XP_006253087

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	23,037,788 - 23,047,330 (-)	NCBI
Rnor_6.0	16	24,779,480 - 24,789,131 (-)	NCBI
Rnor_5.0	16	24,663,045 - 24,672,508 (-)	NCBI

Sequence:

show sequence

AAATCTGACTCAAATGCATTTTCTTAGTGAGGAGGAAAAAGGCTCAAAGGCTCTCAACGGAGAT
CGCTACTTTGGCTTTTTAAAGGACTTCTTTTTGTTCTCTTAGACTGGGGGAAGTAACTTCTCGG
TACTGGCGTGCGGAATAGTTGAGCGTCACAAGAGCAGCGGCAAACCCATTAGCGGAGGCTTTGC
GGTGAAGTGCATCCATCCCCCTTCCCGTAAATAAGCTCTCCCCTTCATTCTTGACTAGGGCTTA
AAGCTCGGACTCTCGGAGGAAAAGGACTTCGCCACAAGATGGCACTGACCTGCAGACAAAGGAA
ATAGCGGTGGCATTGACTTTTAAAACAGGCTTGTAAATGCGCCTTCCCTGAGTCAAGGACTAGT
GGGGGTTTGAGCAGGAGAAATACCAACAGATCTTTCTTCCCTCCAGTGACACTCGTCCCGCTTC
AACACAGGCGAACAGACGGATTCTTTAAAAGAGTATTCAGTTCAAGGGAACGAAGAATTGAGAA
TTATTTTTGGTGAATGGATTCAAATAAATGGAATAAGAGACAGCTGAAGATCTGATCCATTTCG
AAGAACCCTAACAGTCCATTTGTCTAATCCATAACAACAAAACGTAAAAAATGAATTCAACTCT
GTTCTCCAGGGTTGAAAATTACTCAGTTCACTATAATGTCTCAGAGAATTCTCCATTTCTGGCC
TTTGAGAATGATGACTGCCACCTGCCCTTGGCTGTGATATTCACCTTAGCTCTTGCTTATGGGG
CTGTGATTATTCTTGGGGTCTCTGGAAACCTGGCATTGATCATAATCATCCTAAAACAGAAAGA
GATGAGGAATGTCACCAACATTCTGATCGTGAACCTCTCCTTCTCAGACTTGCTGGTCGCAGTC
ATGTGTCTCCCGTTCACCTTTGTGTACACACTGATGGACCACTGGGTCTTCGGGGAGACCATGT
GCAAACTGAATCCTTTTGTGCAATGCGTCTCCATTACAGTATCCATTTTCTCTCTGGTTCTCAT
CGCTGTGGAACGTCATCAGCTAATCATCAACCCAAGAGGGTGGAGACCAAACAATAGACATGCT
TACATAGGCATTACTGTCATTTGGGTACTGGCGGTGGCTTCTTCTCTGCCCTTCGTGATCTATC
AAATTCTGACTGATGAGCCCTTCCAAAATGTATCACTTGCGGCGTTCAAGGACAAGTATGTATG
TTTTGACAAATTCCCGTCAGACTCTCACAGGCTGTCTTACACGACTCTTCTTCTGGTGCTGCAG
TATTTTGGCCCACTCTGTTTCATATTCATATGCTACTTCAAGATATACGTTCGCTTGAAAAGGA
GAAACAACATGATGGACAAAATCAGGGACAGTAAGTACAGGTCCAGTGAGACCAAACGAATCAA
CGTCATGCTGCTCTCCATCGTGGTCGCCTTCGCGGTCTGCTGGCTGCCCCTTACCATCTTCAAC
ACTGTGTTCGACTGGAATCACCAGATCATTGCCACCTGCAACCACAATCTGCTGTTCCTGCTCT
GCCACCTCACGGCCATGATCTCCACCTGCGTCAACCCCATCTTTTATGGATTCCTGAACAAAAA
TTTCCAGAGAGACTTGCAGTTCTTCTTCAACTTTTGTGACTTCCGGTCTCGAGACGACGACTAC
GAGACTATAGCCATGTCTACCATGCATACGGACGTGTCCAAGACTTCTTTGAAGCAGGCAAGCC
CGGTTGCATTTAAAAAAATCAGTATGAATGACAATGAAAAAATCTGAAGCTGCTGAGAACATAC
GGTCCCAGGCTACATCTGTGGAAAAACAAGCACAGCCTGTCACATGCTTTCATTACCTGTGCTC
CCAGGGAATGGATTGAGGCAGGTTTGGAAAGTCCAGGACATCCTGTGTTGGGTTTTACTGCTTT
TGTGATGGTTGCCGTGATTACTTGGCAATCTAGATTACTTTGTAATCTATCTGGCAACAGTTTT
GACCAGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTGGGTA
TGTGTGTGAAATTATCCATAACAAGGAGTCTTATATCGTATTTATTGGAGTGAATTTGTCTGAA
GTAATGTCATGAGCTCACTTCAAAAGCAGTACCTACCTGATATTCTCAAGATAATTAGATTTTC
AAGATCAGATGAGATTTCCAAGACCTTGGACTACCTTCATTCCATGCTAGGCATTATGTTAGTC
TGTTACAAGGGTGACAGTATACAAAAGTCACCTTTTAGGATGTGCCGGAGCCAAAAGAGAGTCT
GAAGTCATTTGGCAGTATCTTTTTTCTCTCTCTCTTTTTGAGAGGTCTAGATTTGTTATTCAGC
TACAATTGAGTCTTGCTTAAGATAAATAAGAAGGCGGCTTTCAGCTGTGTATATATCCGGGCGT
TAGGCCATTCACAAGAATGAAGTGGCAAAGCAGGTCGCTGATTTCAAAATTCCTCTGACAACCA
AAGCATTAATTAGTCATTTAATATGTAAACTAGTCTTGCTACAGATAGATAAATTGCATCCAAA
GGACTTGATCATCAAGAGGTTTTTGCATCGCTCATCAGAGCATTCAGCACCATCAAGCTTTCTT
GCGCAAGCACGTGACTCTGAGAGCATTTCTAACTCATACTGCATAGAAACATAAGATGCGTTTT
CCATACAACAGTGCCTGCATAGTAACTAGTGTTTAACTCTCACCATTTATCCTTCATGGCAGAT
GACACATGGACAATGTTTATGTAGGTACCCTCATCGAACTGGTAACTGTTCCTAAAAATGTCAT
GTGGCCAGCCCATCCTAATTTGTATAAACTGTATAACGTGTGGAGTTTTATAATCATATACTAT
TATATCATAGAATACTGAGTAGCCCTGTAATATTAATATATTTACTTTCACATATCTTGTAATC
ATGATTTAGACTCAGAAAAGATACTTTGAAGAACAAGAGAGTTTCAATGTATTATATAAAAATG
TTGCCTGTATGTGATTTTAGAAGGGCAAACACTTTCTGTATTAAAACTGGGCTTTTTCAGAGGA

hide sequence

RefSeq Acc Id:

XM_017600051 ⟹ XP_017455540

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	24,779,480 - 24,789,131 (-)	NCBI

Sequence:

show sequence

AAATCTGACTCAAATGCATTTTCTTAGTGAGGAGGAAAAAGGCTCAAAGGCTCTCAACGGAGAT
CGCTACTTTGGCTTTTTAAAGGACTTCTTTTTGTTCTCTTAGACTGGGGGAAGTAACTTCTCGG
TACTGGCGTGCGGAATAGTTGAGCGTCACAAGAGCAGCGGCAAACCCATTAGCGGAGGCTTTGC
GGTGAAGTGCATCCATCCCCCTTCCCGTAAATAAGCTCTCCCCTTCATTCTTGACTAGGGCTTA
AAGCTCGGACTCTCGGAGGAAAAGGACTTCGCCACAAGATGGCACTGACCTGCAGACAAAGGAA
ATAGCGGTGGCATTGACTTTTAAAACAGGCTTGTAAATGCGCCTTCCCTGAGTCAAGGACTAGT
GGGGTGAGAGCTCTGGTTTGAGCAGGAGAAATACCAACAGATCTTTCTTCCCTCCAGTGACACT
CGTCCCGCTTCAACACAGGCGAACAGACGGATTCTTTAAAAGAGTATTCAGTTCAAGGGAACGA
AGAATTGAGAATTATTTTTGGTGAATGGATTCAAATAAATGGAATAAGAGACAGCTGAAGATCT
GATCCATTTCGAAGAACCCTAACAGTCCATTTGTCTAATCCATAACAACAAAACGTAAAAAATG
AATTCAACTCTGTTCTCCAGGGTTGAAAATTACTCAGTTCACTATAATGTCTCAGAGAATTCTC
CATTTCTGGCCTTTGAGAATGATGACTGCCACCTGCCCTTGGCTGTGATATTCACCTTAGCTCT
TGCTTATGGGGCTGTGATTATTCTTGGGGTCTCTGGAAACCTGGCATTGATCATAATCATCCTA
AAACAGAAAGAGATGAGGAATGTCACCAACATTCTGATCGTGAACCTCTCCTTCTCAGACTTGC
TGGTCGCAGTCATGTGTCTCCCGTTCACCTTTGTGTACACACTGATGGACCACTGGGTCTTCGG
GGAGACCATGTGCAAACTGAATCCTTTTGTGCAATGCGTCTCCATTACAGTATCCATTTTCTCT
CTGGTTCTCATCGCTGTGGAACGTCATCAGCTAATCATCAACCCAAGAGGGTGGAGACCAAACA
ATAGACATGCTTACATAGGCATTACTGTCATTTGGGTACTGGCGGTGGCTTCTTCTCTGCCCTT
CGTGATCTATCAAATTCTGACTGATGAGCCCTTCCAAAATGTATCACTTGCGGCGTTCAAGGAC
AAGTATGTATGTTTTGACAAATTCCCGTCAGACTCTCACAGGCTGTCTTACACGACTCTTCTTC
TGGTGCTGCAGTATTTTGGCCCACTCTGTTTCATATTCATATGCTACTTCAAGATATACGTTCG
CTTGAAAAGGAGAAACAACATGATGGACAAAATCAGGGACAGTAAGTACAGGTCCAGTGAGACC
AAACGAATCAACGTCATGCTGCTCTCCATCGTGGTCGCCTTCGCGGTCTGCTGGCTGCCCCTTA
CCATCTTCAACACTGTGTTCGACTGGAATCACCAGATCATTGCCACCTGCAACCACAATCTGCT
GTTCCTGCTCTGCCACCTCACGGCCATGATCTCCACCTGCGTCAACCCCATCTTTTATGGATTC
CTGAACAAAAATTTCCAGAGAGACTTGCAGTTCTTCTTCAACTTTTGTGACTTCCGGTCTCGAG
ACGACGACTACGAGACTATAGCCATGTCTACCATGCATACGGACGTGTCCAAGACTTCTTTGAA
GCAGGCAAGCCCGGTTGCATTTAAAAAAATCAGTATGAATGACAATGAAAAAATCTGAAGCTGC
TGAGAACATACGGTCCCAGGCTACATCTGTGGAAAAACAAGCACAGCCTGTCACATGCTTTCAT
TACCTGTGCTCCCAGGGAATGGATTGAGGCAGGTTTGGAAAGTCCAGGACATCCTGTGTTGGGT
TTTACTGCTTTTGTGATGGTTGCCGTGATTACTTGGCAATCTAGATTACTTTGTAATCTATCTG
GCAACAGTTTTGACCAGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCT
GTCTGTGGGTATGTGTGTGAAATTATCCATAACAAGGAGTCTTATATCGTATTTATTGGAGTGA
ATTTGTCTGAAGTAATGTCATGAGCTCACTTCAAAAGCAGTACCTACCTGATATTCTCAAGATA
ATTAGATTTTCAAGATCAGATGAGATTTCCAAGACCTTGGACTACCTTCATTCCATGCTAGGCA
TTATGTTAGTCTGTTACAAGGGTGACAGTATACAAAAGTCACCTTTTAGGATGTGCCGGAGCCA
AAAGAGAGTCTGAAGTCATTTGGCAGTATCTTTTTTCTCTCTCTCTTTTTGAGAGGTCTAGATT
TGTTATTCAGCTACAATTGAGTCTTGCTTAAGATAAATAAGAAGGCGGCTTTCAGCTGTGTATA
TATCCGGGCGTTAGGCCATTCACAAGAATGAAGTGGCAAAGCAGGTCGCTGATTTCAAAATTCC
TCTGACAACCAAAGCATTAATTAGTCATTTAATATGTAAACTAGTCTTGCTACAGATAGATAAA
TTGCATCCAAAGGACTTGATCATCAAGAGGTTTTTGCATCGCTCATCAGAGCATTCAGCACCAT
CAAGCTTTCTTGCGCAAGCACGTGACTCTGAGAGCATTTCTAACTCATACTGCATAGAAACATA
AGATGCGTTTTCCATACAACAGTGCCTGCATAGTAACTAGTGTTTAACTCTCACCATTTATCCT
TCATGGCAGATGACACATGGACAATGTTTATGTAGGTACCCTCATCGAACTGGTAACTGTTCCT
AAAAATGTCATGTGGCCAGCCCATCCTAATTTGTATAAACTGTATAACGTGTGGAGTTTTATAA
TCATATACTATTATATCATAGAATACTGAGTAGCCCTGTAATATTAATATATTTACTTTCACAT
ATCTTGTAATCATGATTTAGACTCAGAAAAGATACTTTGAAGAACAAGAGAGTTTCAATGTATT
ATATAAAAATGTTGCCTGTATGTGATTTTAGAAGGGCAAACACTTTCTGTATTAAAACTGGGCT
TTTTCAGAGGA

hide sequence

RefSeq Acc Id:

XM_039094425 ⟹ XP_038950353

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	23,037,788 - 23,047,330 (-)	NCBI

RefSeq Acc Id:

XM_039094426 ⟹ XP_038950354

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	23,037,788 - 23,046,953 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001106828	(Get FASTA)	NCBI Sequence Viewer
	XP_006253086	(Get FASTA)	NCBI Sequence Viewer
	XP_006253087	(Get FASTA)	NCBI Sequence Viewer
	XP_038950353	(Get FASTA)	NCBI Sequence Viewer
	XP_038950354	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89981	(Get FASTA)	NCBI Sequence Viewer
	EDL75957	(Get FASTA)	NCBI Sequence Viewer
	EDL75958	(Get FASTA)	NCBI Sequence Viewer
	P21555	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001106828 ⟸ NM_001113357

- UniProtKB:

G3V7T1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNSTLFSRVENYSVHYNVSENSPFLAFENDDCHLPLAVIFTLALAYGAVIILGVSGNLALIIII
LKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVYTLMDHWVFGETMCKLNPFVQCVSITVSIF
SLVLIAVERHQLIINPRGWRPNNRHAYIGITVIWVLAVASSLPFVIYQILTDEPFQNVSLAAFK
DKYVCFDKFPSDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYVRLKRRNNMMDKIRDSKYRSSE
TKRINVMLLSIVVAFAVCWLPLTIFNTVFDWNHQIIATCNHNLLFLLCHLTAMISTCVNPIFYG
FLNKNFQRDLQFFFNFCDFRSRDDDYETIAMSTMHTDVSKTSLKQASPVAFKKISMNDNEKI

hide sequence

RefSeq Acc Id:	XP_006253087 ⟸ XM_006253025
- Peptide Label:	isoform X1
- UniProtKB:	G3V7T1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSTLFSRVENYSVHYNVSENSPFLAFENDDCHLPLAVIFTLALAYGAVIILGVSGNLALIIII LKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVYTLMDHWVFGETMCKLNPFVQCVSITVSIF SLVLIAVERHQLIINPRGWRPNNRHAYIGITVIWVLAVASSLPFVIYQILTDEPFQNVSLAAFK DKYVCFDKFPSDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYVRLKRRNNMMDKIRDSKYRSSE TKRINVMLLSIVVAFAVCWLPLTIFNTVFDWNHQIIATCNHNLLFLLCHLTAMISTCVNPIFYG FLNKNFQRDLQFFFNFCDFRSRDDDYETIAMSTMHTDVSKTSLKQASPVAFKKISMNDNEKI hide sequence

RefSeq Acc Id:	XP_006253086 ⟸ XM_006253024
- Peptide Label:	isoform X1
- UniProtKB:	G3V7T1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSTLFSRVENYSVHYNVSENSPFLAFENDDCHLPLAVIFTLALAYGAVIILGVSGNLALIIII LKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVYTLMDHWVFGETMCKLNPFVQCVSITVSIF SLVLIAVERHQLIINPRGWRPNNRHAYIGITVIWVLAVASSLPFVIYQILTDEPFQNVSLAAFK DKYVCFDKFPSDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYVRLKRRNNMMDKIRDSKYRSSE TKRINVMLLSIVVAFAVCWLPLTIFNTVFDWNHQIIATCNHNLLFLLCHLTAMISTCVNPIFYG FLNKNFQRDLQFFFNFCDFRSRDDDYETIAMSTMHTDVSKTSLKQASPVAFKKISMNDNEKI hide sequence

RefSeq Acc Id:

XP_017455540 ⟸ XM_017600051

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNSTLFSRVENYSVHYNVSENSPFLAFENDDCHLPLAVIFTLALAYGAVIILGVSGNLALIIII
LKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVYTLMDHWVFGETMCKLNPFVQCVSITVSIF
SLVLIAVERHQLIINPRGWRPNNRHAYIGITVIWVLAVASSLPFVIYQILTDEPFQNVSLAAFK
DKYVCFDKFPSDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYVRLKRRNNMMDKIRDSKYRSSE
TKRINVMLLSIVVAFAVCWLPLTIFNTVFDWNHQIIATCNHNLLFLLCHLTAMISTCVNPIFYG
FLNKNFQRDLQFFFNFCDFRSRDDDYETIAMSTMHTDVSKTSLKQASPVAFKKISMNDNEKI

hide sequence

RefSeq Acc Id:

ENSRNOP00000068980 ⟸ ENSRNOT00000079412

RefSeq Acc Id:

ENSRNOP00000018952 ⟸ ENSRNOT00000018952

RefSeq Acc Id:	XP_038950353 ⟸ XM_039094425
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038950354 ⟸ XM_039094426
- Peptide Label:	isoform X2

Protein Domains

G_PROTEIN_RECEP_F1_2

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3198	AgrOrtholog
Ensembl Genes	ENSRNOG00000014149	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000018952	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000068980	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018952	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000079412	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7317839	IMAGE-MGC_LOAD
InterPro	GPCR_Rhodpsn	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NPY1_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NPY_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29358	UniProtKB/TrEMBL
MGC_CLONE	MGC:109393	IMAGE-MGC_LOAD
NCBI Gene	29358	ENTREZGENE
PANTHER	PTHR24235:SF24	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	7tm_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Npy1r	PhenoGen
PRINTS	GPCRRHODOPSN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NRPEPTIDEY1R	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NRPEPTIDEYR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	G3V7T1	ENTREZGENE, UniProtKB/TrEMBL
	NPY1R_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q5FVH5_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-11-06	Npy1r	neuropeptide Y receptor Y1		neuropeptide Y1 receptor	Name updated	625702	APPROVED
2002-06-10	Npy1r	neuropeptide Y1 receptor			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in thalamus, cerebral cortex and hippocampus	69907

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD