Npy1r (neuropeptide Y receptor Y1) - Rat Genome Database
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Gene: Npy1r (neuropeptide Y receptor Y1) Mus musculus
Analyze
Symbol: Npy1r
Name: neuropeptide Y receptor Y1
RGD ID: 737212
MGI Page MGI
Description: Exhibits pancreatic polypeptide receptor activity and peptide YY receptor activity. Involved in several processes, including feeding behavior; glucose metabolic process; and sensory perception of pain. Predicted to localize to several cellular components, including axon; cytosol; and synaptic vesicle. Is expressed in several structures, including heart; immune system; lung; metanephros; and nervous system. Used to study obesity. Orthologous to human NPY1R (neuropeptide Y receptor Y1); INTERACTS WITH 1,2-dichloroethane; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: N; neuropeptide Y receptor subtype; neuropeptide Y receptor type 1; NPY-1 receptor; NPY1-R; Npyr; Y1-; Y1-R
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39867,149,595 - 67,159,452 (+)NCBIGRCm39mm39
GRCm38866,697,149 - 66,706,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl866,697,192 - 66,706,792 (+)EnsemblGRCm38mm10GRCm38
MGSCv37869,221,321 - 69,230,697 (+)NCBIGRCm37mm9NCBIm37
MGSCv36869,632,837 - 69,635,097 (+)NCBImm8
Celera869,251,576 - 69,260,940 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map833.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
1D-myo-inositol 1,4,5-trisphosphate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-methyl-4-chlorophenoxybutyric acid  (ISO)
6-propyl-2-thiouracil  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (EXP)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
capsaicin  (ISO)
carbon nanotube  (EXP)
chrysene  (EXP)
coumestrol  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
cyromazine  (ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
fluoxetine  (ISO)
genistein  (EXP,ISO)
ifosfamide  (ISO)
ketamine  (ISO)
lead diacetate  (ISO)
medroxyprogesterone acetate  (ISO)
mercury dichloride  (ISO)
methamphetamine  (EXP,ISO)
methylmercury chloride  (ISO)
morphine  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
panobinostat  (ISO)
pentobarbital  (EXP)
phenylmercury acetate  (ISO)
phenylpropanolamine  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
picrotoxin  (ISO)
pioglitazone  (EXP)
pirimicarb  (ISO)
progesterone  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (ISO)
tetraphene  (EXP)
thiram  (ISO)
titanium dioxide  (EXP)
tribromoethanol  (EXP)
trichostatin A  (ISO)
trifluoroacetic acid  (ISO)
valproic acid  (EXP,ISO)
ziram  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone ossification  (IAGP)
abnormal cardiovascular system physiology  (IAGP)
abnormal eating behavior  (IAGP)
abnormal energy expenditure  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal glycogen level  (IAGP)
abnormal immune cell physiology  (IAGP)
abnormal immune system organ morphology  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal immunoglobulin level  (IAGP)
abnormal inflammatory response  (IAGP)
abnormal lymph node cell ratio  (IAGP)
abnormal macrophage physiology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal olfactory sensory neuron morphology  (IAGP)
abnormal osteoblast physiology  (IAGP)
abnormal postnatal subventricular zone morphology  (IAGP)
abnormal professional antigen presenting cell physiology  (IAGP)
abnormal righting response  (IAGP)
abnormal rostral migratory stream morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal splenic cell ratio  (IAGP)
abnormal sympathetic system morphology  (IAGP)
abnormal T cell activation  (IAGP)
abnormal T cell number  (IAGP)
abnormal T-helper 1 physiology  (IAGP)
abnormal vasoconstriction  (IAGP)
cardiac interstitial fibrosis  (IAGP)
decreased B cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased circulating interleukin-12 level  (IAGP)
decreased circulating leptin level  (IAGP)
decreased circulating tumor necrosis factor level  (IAGP)
decreased compensatory feeding amount  (IAGP)
decreased energy expenditure  (IAGP)
decreased epididymal fat pad weight  (IAGP)
decreased exploration in new environment  (IAGP)
decreased food intake  (IAGP)
decreased heart rate  (IAGP)
decreased IgG2a level  (IAGP)
decreased interferon-gamma secretion  (IAGP)
decreased marginal zone B cell number  (IAGP)
decreased mature B cell number  (IAGP)
decreased neuronal precursor cell number  (IAGP)
decreased oxygen consumption  (IAGP)
decreased respiratory quotient  (IAGP)
decreased sensitivity to xenobiotic induced morbidity/mortality  (IAGP)
decreased subcutaneous adipose tissue amount  (IAGP)
decreased susceptibility to type IV hypersensitivity reaction  (IAGP)
decreased susceptibility to weight gain  (IAGP)
decreased total fat pad weight  (IAGP)
decreased transitional stage B cell number  (IAGP)
hyperactivity  (IAGP)
hyperglycemia  (IAGP)
hypoactivity  (IAGP)
impaired behavioral response to alcohol  (IAGP)
impaired glucose tolerance  (IAGP)
increased adipocyte glucose uptake  (IAGP)
increased aggression towards mice  (IAGP)
increased alcohol consumption  (IAGP)
increased anxiety-related response  (IAGP)
increased body weight  (IAGP)
increased bone mineral content  (IAGP)
increased bone mineral density  (IAGP)
increased bone strength  (IAGP)
increased bone trabecula number  (IAGP)
increased CD4-positive, alpha beta T cell number  (IAGP)
increased CD8-positive, alpha-beta T cell number  (IAGP)
increased circulating corticosterone level  (IAGP)
increased circulating free fatty acids level  (IAGP)
increased circulating glucose level  (IAGP)
increased circulating insulin level  (IAGP)
increased circulating leptin level  (IAGP)
increased diameter of femur  (IAGP)
increased energy expenditure  (IAGP)
increased epididymal fat pad weight  (IAGP)
increased gonadal fat pad weight  (IAGP)
increased IgA level  (IAGP)
increased IgG2b level  (IAGP)
increased IgM level  (IAGP)
increased immunoglobulin level  (IAGP)
increased litter size  (IAGP)
increased percent body fat/body weight  (IAGP)
increased respiratory quotient  (IAGP)
increased retroperitoneal fat pad weight  (IAGP)
increased single-positive T cell number  (IAGP)
increased total body fat amount  (IAGP)
increased trabecular bone thickness  (IAGP)
increased white adipose tissue amount  (IAGP)
no abnormal phenotype detected  (IAGP)
obese  (IAGP)
slow postnatal weight gain  (IAGP)
small spleen  (IAGP)
References

References - curated
1. Bjornebekk A, etal., Hippocampus. 2010 Jul;20(7):820-8. doi: 10.1002/hipo.20683.
2. Canatan H Cell Biochem Funct. 2007 Jun 11;.
3. Chance WT, etal., Peptides. 2007 Feb;28(2):295-301. Epub 2007 Jan 17.
4. Cheung RT and Cechetto DF, Neuroscience. 2000;98(4):771-7.
5. Chottova Dvorakova M, etal., Neuroscience. 2008 Feb 19;151(4):1016-28. doi: 10.1016/j.neuroscience.2007.07.069. Epub 2007 Dec 8.
6. Igura K, etal., Rejuvenation Res. 2011 Aug;14(4):393-403. doi: 10.1089/rej.2010.1129. Epub 2011 May 19.
7. Kopp J, etal., Brain Res Mol Brain Res. 1999 Sep 8;72(1):17-29.
8. Kushi A, etal., Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15659-64.
9. Li L, etal., J Cardiovasc Transl Res. 2011 Jun;4(3):351-62. doi: 10.1007/s12265-011-9271-5. Epub 2011 Apr 6.
10. MGD and Homologene mouse data transfer
11. MGD data from the GO Consortium
12. MGD IEA
13. Michalkiewicz M, etal., Hypertension 2005 Apr;45(4):780-5. Epub 2005 Feb 7.
14. Morales-Medina JC, etal., Neuropharmacology. 2012 Jan;62(1):200-8. doi: 10.1016/j.neuropharm.2011.06.030. Epub 2011 Jul 23.
15. Morris MJ, etal., Eur J Neurosci. 2007 Feb;25(4):1136-43.
16. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
17. Pesini P, etal., Brain Res. 1999 May 15;828(1-2):41-59.
18. RGD automated import pipeline
19. RGD automated import pipeline for gene-chemical interactions
20. Urban JH, etal., Endocrinology. 2006 Sep;147(9):4122-31. Epub 2006 May 25.
21. Vezzani A and Sperk G, Neuropeptides. 2004 Aug;38(4):245-52.
22. Wang C, etal., Horm Metab Res. 2007 Apr;39(4):262-7.
Additional References at PubMed
PMID:1468559   PMID:8530415   PMID:8641440   PMID:8884266   PMID:9016343   PMID:9169155   PMID:9315606   PMID:9417917   PMID:9623984   PMID:9722158   PMID:10349636   PMID:10397770  
PMID:10441733   PMID:10458909   PMID:10567855   PMID:10698177   PMID:10720571   PMID:10729222   PMID:10931824   PMID:11042159   PMID:11076861   PMID:11206547   PMID:11217851   PMID:11287097  
PMID:11454027   PMID:11579129   PMID:11773602   PMID:11826154   PMID:11978737   PMID:12031341   PMID:12358774   PMID:12477932   PMID:12859678   PMID:12925003   PMID:12960052   PMID:14525913  
PMID:14597564   PMID:15314215   PMID:15364030   PMID:15489334   PMID:15499082   PMID:15627497   PMID:15652259   PMID:15690487   PMID:15836615   PMID:16100526   PMID:16141072   PMID:16141073  
PMID:16198492   PMID:16203045   PMID:16330815   PMID:16380472   PMID:16564642   PMID:16602821   PMID:16650144   PMID:16798884   PMID:16873543   PMID:16987237   PMID:17239249   PMID:17400914  
PMID:17456788   PMID:17491016   PMID:17491022   PMID:17584829   PMID:17614946   PMID:17868303   PMID:17891380   PMID:18088353   PMID:18258196   PMID:18305161   PMID:18500388   PMID:18802344  
PMID:18847327   PMID:19351805   PMID:19459152   PMID:19482021   PMID:19614678   PMID:19877281   PMID:20095007   PMID:20096928   PMID:20200977   PMID:20211262   PMID:21040809   PMID:21267068  
PMID:21383768   PMID:21452195   PMID:21514339   PMID:21677750   PMID:21816512   PMID:21873635   PMID:21923762   PMID:22084082   PMID:22289084   PMID:22723691   PMID:22768253   PMID:23011592  
PMID:23375831   PMID:23395170   PMID:23733357   PMID:24025680   PMID:24355921   PMID:24548641   PMID:24779394   PMID:24952961   PMID:24985894   PMID:25471570   PMID:25737952   PMID:25916827  
PMID:26178014   PMID:27019015   PMID:27090492   PMID:27244241   PMID:27474416   PMID:27646989   PMID:28656295   PMID:28887564   PMID:29353053   PMID:30177746   PMID:31315043   PMID:31351040  
PMID:32170006   PMID:32376782  


Genomics

Comparative Map Data
Npy1r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39867,149,595 - 67,159,452 (+)NCBIGRCm39mm39
GRCm38866,697,149 - 66,706,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl866,697,192 - 66,706,792 (+)EnsemblGRCm38mm10GRCm38
MGSCv37869,221,321 - 69,230,697 (+)NCBIGRCm37mm9NCBIm37
MGSCv36869,632,837 - 69,635,097 (+)NCBImm8
Celera869,251,576 - 69,260,940 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map833.15NCBI
NPY1R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4163,323,962 - 163,344,832 (-)EnsemblGRCh38hg38GRCh38
GRCh384163,323,962 - 163,344,832 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh374164,245,116 - 164,265,984 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364164,464,567 - 164,473,198 (-)NCBINCBI36hg18NCBI36
Build 344164,602,721 - 164,611,353NCBI
Celera4161,577,336 - 161,585,966 (-)NCBI
Cytogenetic Map4q32.2NCBI
HuRef4159,999,060 - 160,008,005 (-)NCBIHuRef
CHM1_14164,221,563 - 164,230,393 (-)NCBICHM1_1
Npy1r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01624,779,480 - 24,789,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1624,779,477 - 24,788,740 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01624,663,045 - 24,672,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41624,747,183 - 24,756,507 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11624,748,298 - 24,749,803 (-)NCBI
Celera1623,162,089 - 23,171,059 (-)NCBICelera
Cytogenetic Map16p14NCBI
Npy1r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540341,681,728 - 41,694,020 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540341,681,834 - 41,693,094 (+)NCBIChiLan1.0ChiLan1.0
NPY1R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14167,372,306 - 167,392,716 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4167,372,310 - 167,381,597 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04155,583,870 - 155,604,336 (-)NCBIMhudiblu_PPA_v0panPan3
NPY1R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1559,580,809 - 59,583,237 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11559,580,546 - 59,587,753 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Npy1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365552,267,727 - 2,276,673 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPY1R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl852,152,651 - 52,162,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1852,152,649 - 52,163,080 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2855,280,107 - 55,290,551 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NPY1R
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17109,774,700 - 109,794,543 (-)NCBI
ChlSab1.1 Ensembl7109,774,918 - 109,776,905 (-)Ensembl
Npy1r
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475813,542,467 - 13,545,106 (+)NCBI

Position Markers
D63818  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38866,705,259 - 66,705,350UniSTSGRCm38
MGSCv37869,229,158 - 69,229,249UniSTSGRCm37
Celera869,259,397 - 69,259,488UniSTS
Cytogenetic Map8B3-C2UniSTS
Whitehead/MRC_RH8715.78UniSTS
PMC28100P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38866,703,932 - 66,704,927UniSTSGRCm38
MGSCv37869,227,831 - 69,228,826UniSTSGRCm37
Celera869,258,070 - 69,259,065UniSTS
Cytogenetic Map8B3-C2UniSTS
Npy1r  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8B3-C2UniSTS
Npy1r  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38866,704,532 - 66,704,995UniSTSGRCm38
MGSCv37869,228,431 - 69,228,894UniSTSGRCm37
Celera869,258,670 - 69,259,133UniSTS
Cytogenetic Map8B3-C2UniSTS
Npy1r  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38866,704,734 - 66,705,101UniSTSGRCm38
MGSCv37869,228,633 - 69,229,000UniSTSGRCm37
Celera869,258,872 - 69,259,239UniSTS
Cytogenetic Map8B3-C2UniSTS
Npy1r  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8B3-C2UniSTS
Npy1r  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8B3-C2UniSTS
cM Map833.0UniSTS
Npy1r  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38866,704,005 - 66,704,065UniSTSGRCm38
Celera869,258,143 - 69,258,203UniSTS
Cytogenetic Map8B3-C2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83383736267837502Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:504
Count of miRNA genes:343
Interacting mature miRNAs:396
Transcripts:ENSMUST00000039303
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001358955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH000632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D63818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D63819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC025804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z18280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z18281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z18282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z18283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000039303   ⟹   ENSMUSP00000045530
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl866,697,422 - 66,706,792 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212588   ⟹   ENSMUSP00000148417
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl866,697,192 - 66,706,108 (+)Ensembl
RefSeq Acc Id: NM_001358955   ⟹   NP_001345884
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39867,150,074 - 67,159,450 (+)NCBI
GRCm38866,697,422 - 66,706,798 (+)NCBI
Sequence:
RefSeq Acc Id: NM_010934   ⟹   NP_035064
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39867,150,074 - 67,159,450 (+)NCBI
GRCm38866,697,422 - 66,706,798 (+)NCBI
MGSCv37869,221,321 - 69,230,697 (+)RGD
Celera869,251,576 - 69,260,940 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509594   ⟹   XP_006509657
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39867,149,595 - 67,159,452 (+)NCBI
GRCm38866,697,149 - 66,706,800 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006509595   ⟹   XP_006509658
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39867,149,595 - 67,159,452 (+)NCBI
GRCm38866,697,149 - 66,706,800 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153811   ⟹   XP_036009704
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39867,149,595 - 67,159,452 (+)NCBI
RefSeq Acc Id: XM_036153812   ⟹   XP_036009705
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39867,149,595 - 67,159,452 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_035064   ⟸   NM_010934
- UniProtKB: Q04573 (UniProtKB/Swiss-Prot),   Q3V1K5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006509657   ⟸   XM_006509594
- Peptide Label: isoform X1
- UniProtKB: Q04573 (UniProtKB/Swiss-Prot),   Q3V1K5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006509658   ⟸   XM_006509595
- Peptide Label: isoform X1
- UniProtKB: Q04573 (UniProtKB/Swiss-Prot),   Q3V1K5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001345884   ⟸   NM_001358955
RefSeq Acc Id: ENSMUSP00000148417   ⟸   ENSMUST00000212588
RefSeq Acc Id: ENSMUSP00000045530   ⟸   ENSMUST00000039303
RefSeq Acc Id: XP_036009705   ⟸   XM_036153812
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036009704   ⟸   XM_036153811
- Peptide Label: isoform X1
Protein Domains
G_PROTEIN_RECEP_F1_2

Promoters
RGD ID:8667191
Promoter ID:EPDNEW_M11627
Type:initiation region
Name:Npy1r_1
Description:Mus musculus neuropeptide Y receptor Y1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38866,697,422 - 66,697,482EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104963 AgrOrtholog
Ensembl Genes ENSMUSG00000036437 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000045530 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148417 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000039303 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000212588 UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NPY1_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NPY_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18166 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104963 ENTREZGENE
NCBI Gene 18166 ENTREZGENE
PANTHER PTHR24235:SF24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Npy1r PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NRPEPTIDEY1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NRPEPTIDEYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.5112 ENTREZGENE
UniProt NPY1R_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3V1K5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q61993 UniProtKB/Swiss-Prot