Mag (myelin associated glycoprotein) - Rat Genome Database

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Gene: Mag (myelin associated glycoprotein) Heterocephalus glaber
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Symbol: Mag
Name: myelin associated glycoprotein
RGD ID: 18920030
Description: ENCODES a protein that exhibits ganglioside GT1b binding (ortholog); protein homodimerization activity (ortholog); protein kinase binding (ortholog); INVOLVED IN axon regeneration (ortholog); cell-cell adhesion via plasma-membrane adhesion molecules (ortholog); cellular response to mechanical stimulus (ortholog); ASSOCIATED WITH Acute Experimental Autoimmune Encephalomyelitis (ortholog); angiostrongyliasis (ortholog); Brain Injuries (ortholog); FOUND IN compact myelin (ortholog); mesaxon (ortholog); myelin sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Myelin-associated glycoprotein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,236,223 - 8,258,361 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,237,005 - 8,251,933 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Mag
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,236,223 - 8,258,361 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,237,005 - 8,251,933 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MAG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,292,161 - 35,313,807 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,292,125 - 35,313,807 (+)EnsemblGRCh38hg38GRCh38
GRCh371935,783,064 - 35,804,710 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,474,878 - 40,496,547 (+)NCBINCBI36Build 36hg18NCBI36
Build 341940,474,877 - 40,496,547NCBI
Celera1932,496,476 - 32,518,142 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,291,486 - 32,313,186 (+)NCBIHuRef
CHM1_11935,784,610 - 35,806,322 (+)NCBICHM1_1
T2T-CHM13v2.01937,836,825 - 37,858,521 (+)NCBIT2T-CHM13v2.0
Mag
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,598,600 - 30,614,347 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,598,601 - 30,614,298 (-)EnsemblGRCm39 Ensembl
GRCm38730,899,175 - 30,914,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,899,176 - 30,914,873 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,684,202 - 31,699,851 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,607,943 - 30,623,592 (-)NCBIMGSCv36mm8
Celera725,483,485 - 25,499,089 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.26NCBI
Mag
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,275,728 - 95,291,133 (-)NCBIGRCr8
mRatBN7.2186,148,227 - 86,163,726 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,148,228 - 86,163,656 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,568,489 - 91,583,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,034,659 - 100,049,930 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,326,789 - 93,342,064 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,345,325 - 89,360,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,345,429 - 89,360,733 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,500,932 - 90,516,312 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,954,511 - 85,970,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,032,629 - 86,048,943 (-)NCBI
Celera180,517,171 - 80,532,485 (-)NCBICelera
Cytogenetic Map1q21NCBI
Mag
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,584,162 - 4,598,914 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,584,068 - 4,598,772 (+)NCBIChiLan1.0ChiLan1.0
MAG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,304,655 - 41,326,706 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,288,023 - 43,310,063 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,238,457 - 32,260,497 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11940,975,763 - 40,997,401 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1940,975,763 - 40,997,401 (+)Ensemblpanpan1.1panPan2
MAG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,288,306 - 117,301,975 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,288,343 - 117,302,386 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,691,276 - 116,704,898 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,888,249 - 117,901,841 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,861,538 - 117,902,800 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,450,999 - 117,464,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,076,835 - 117,090,444 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,132,334 - 118,145,991 (-)NCBIUU_Cfam_GSD_1.0
Mag
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,640,975 - 10,656,139 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936570989,743 - 1,004,820 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,794,204 - 44,809,926 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1644,794,197 - 44,809,933 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,214,125 - 40,221,021 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,224,873 - 30,246,277 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,227,442 - 30,246,481 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660737,998,988 - 8,036,095 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000009504   ⟹   ENSHGLP00000009400
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247948,236,223 - 8,258,361 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000009505   ⟹   ENSHGLP00000009401
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247948,236,223 - 8,258,361 (-)Ensembl
RefSeq Acc Id: XM_004858825   ⟹   XP_004858882
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247948,237,005 - 8,251,104 (-)NCBI
RefSeq Acc Id: XM_004858826   ⟹   XP_004858883
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247948,237,005 - 8,251,075 (-)NCBI
RefSeq Acc Id: XM_004858827   ⟹   XP_004858884
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247948,237,005 - 8,251,022 (-)NCBI
RefSeq Acc Id: XM_004858830   ⟹   XP_004858887
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247948,237,005 - 8,251,104 (-)NCBI
RefSeq Acc Id: XM_013077555   ⟹   XP_012933009
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247948,237,005 - 8,251,058 (-)NCBI
RefSeq Acc Id: XM_021239721   ⟹   XP_021095380
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247948,237,005 - 8,251,933 (-)NCBI
RefSeq Acc Id: XP_021095380   ⟸   XM_021239721
- Peptide Label: isoform X1
- UniProtKB: G5BXJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004858882   ⟸   XM_004858825
- Peptide Label: isoform X1
- UniProtKB: G5BXJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004858887   ⟸   XM_004858830
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004858883   ⟸   XM_004858826
- Peptide Label: isoform X1
- UniProtKB: G5BXJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933009   ⟸   XM_013077555
- Peptide Label: isoform X1
- UniProtKB: G5BXJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004858884   ⟸   XM_004858827
- Peptide Label: isoform X1
- UniProtKB: G5BXJ3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000009400   ⟸   ENSHGLT00000009504
Ensembl Acc Id: ENSHGLP00000009401   ⟸   ENSHGLT00000009505


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006740 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009504 ENTREZGENE
  ENSHGLT00000009505 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  SIGLEC UniProtKB/TrEMBL
KEGG Report hgl:101697784 UniProtKB/TrEMBL
NCBI Gene Mag ENTREZGENE
PANTHER MYELIN-ASSOCIATED GLYCOPROTEIN UniProtKB/TrEMBL
  SIALIC ACID BINDING IMMUNOGLOBULIN-LIKE LECTIN UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0AAX6PUT0_HETGA UniProtKB/TrEMBL
  G5BXJ3 ENTREZGENE, UniProtKB/TrEMBL