Ms4a2 (membrane spanning 4-domains A2) - Rat Genome Database

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Gene: Ms4a2 (membrane spanning 4-domains A2) Heterocephalus glaber
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Symbol: Ms4a2
Name: membrane spanning 4-domains A2
RGD ID: 18909913
Description: ENCODES a protein that exhibits IgE binding (ortholog); phosphoprotein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); cytokine production (ortholog); immune response (ortholog); PARTICIPATES IN Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH aspirin-induced respiratory disease (ortholog); asthma (ortholog); atopic dermatitis (ortholog); FOUND IN endosome (ortholog); external side of plasma membrane (ortholog); Fc-epsilon receptor I complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: high affinity immunoglobulin epsilon receptor subunit beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624864807,253 - 813,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624864804,950 - 813,419 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ms4a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624864807,253 - 813,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624864804,950 - 813,419 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MS4A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,088,259 - 60,098,467 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,088,261 - 60,098,467 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,856,137 - 59,865,940 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,612,713 - 59,622,593 (+)NCBINCBI36Build 36hg18NCBI36
Build 341159,612,712 - 59,622,593NCBI
Celera1157,220,517 - 57,230,320 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1156,203,291 - 56,213,094 (+)NCBIHuRef
CHM1_11159,722,124 - 59,731,922 (+)NCBICHM1_1
T2T-CHM13v2.01160,039,540 - 60,049,747 (+)NCBIT2T-CHM13v2.0
Ms4a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391911,592,881 - 11,601,154 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1911,592,887 - 11,601,083 (-)EnsemblGRCm39 Ensembl
GRCm381911,615,517 - 11,623,790 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1911,615,523 - 11,623,719 (-)EnsemblGRCm38mm10GRCm38
MGSCv371911,691,683 - 11,698,133 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361911,684,238 - 11,690,688 (-)NCBIMGSCv36mm8
Celera1912,289,076 - 12,295,526 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.46NCBI
Ms4a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,864,855 - 217,873,934 (-)NCBIGRCr8
mRatBN7.21208,440,179 - 208,448,716 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1208,440,361 - 208,448,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1216,815,093 - 216,823,042 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,833,935 - 223,841,752 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01216,569,529 - 216,577,478 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01227,957,363 - 227,965,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1227,957,302 - 227,965,386 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01235,019,784 - 235,027,733 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,011,050 - 214,018,999 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11214,169,479 - 214,177,429 (+)NCBI
Celera1205,916,298 - 205,924,247 (-)NCBICelera
RH 3.4 Map11501.5RGD
Cytogenetic Map1q43NCBI
Ms4a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555114,380,502 - 4,400,852 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555114,377,894 - 4,400,797 (+)NCBIChiLan1.0ChiLan1.0
MS4A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2961,224,616 - 61,234,384 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11162,268,298 - 62,278,085 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,318,843 - 55,326,779 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,764,911 - 58,772,567 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,764,911 - 58,772,567 (+)Ensemblpanpan1.1panPan2
MS4A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12150,439,133 - 50,456,785 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2150,450,024 - 50,456,785 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2149,890,835 - 49,897,600 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02151,612,389 - 51,629,878 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2151,623,124 - 51,629,878 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12150,670,449 - 50,677,218 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02150,767,877 - 50,774,639 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02151,392,625 - 51,399,386 (+)NCBIUU_Cfam_GSD_1.0
Ms4a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494712,629,201 - 12,638,145 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365812,744,881 - 2,751,925 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365812,743,133 - 2,751,925 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MS4A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl211,400,420 - 11,420,298 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1211,400,415 - 11,420,314 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,959,657 - 10,979,571 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MS4A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,657,842 - 13,666,314 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,654,696 - 13,665,925 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,993,186 - 111,001,722 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000010735   ⟹   ENSHGLP00000010615
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624864807,253 - 813,381 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000010736   ⟹   ENSHGLP00000010616
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624864807,253 - 813,381 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000010737   ⟹   ENSHGLP00000010617
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624864807,253 - 813,381 (-)Ensembl
RefSeq Acc Id: XM_004869707   ⟹   XP_004869764
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624864804,950 - 813,419 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004869764 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010615
GenBank Protein JAN97940 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004869764   ⟸   XM_004869707
Ensembl Acc Id: ENSHGLP00000010617   ⟸   ENSHGLT00000010737
Ensembl Acc Id: ENSHGLP00000010616   ⟸   ENSHGLT00000010736
Ensembl Acc Id: ENSHGLP00000010615   ⟸   ENSHGLT00000010735


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007608 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010735 ENTREZGENE
NCBI Gene Ms4a2 ENTREZGENE