NCKAP1 (NCK associated protein 1) - Rat Genome Database

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Gene: NCKAP1 (NCK associated protein 1) Chlorocebus sabaeus
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Symbol: NCKAP1
Name: NCK associated protein 1
RGD ID: 18695900
Description: ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN apical protein localization (ortholog); basal protein localization (ortholog); cell migration involved in gastrulation (ortholog); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); developmental and epileptic encephalopathy 11 (ortholog); FOUND IN filamentous actin (ortholog); glutamatergic synapse (ortholog); lamellipodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nck-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11068,434,839 - 68,546,431 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1068,433,258 - 68,545,990 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040130,996,820 - 131,108,402 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NCKAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11068,434,839 - 68,546,431 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1068,433,258 - 68,545,990 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040130,996,820 - 131,108,402 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NCKAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382182,909,115 - 183,038,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2182,909,115 - 183,038,858 (-)EnsemblGRCh38hg38GRCh38
GRCh372183,773,843 - 183,903,185 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362183,497,850 - 183,611,474 (-)NCBINCBI36Build 36hg18NCBI36
Build 342183,615,110 - 183,728,735NCBI
Celera2177,385,839 - 177,499,386 (-)NCBICelera
Cytogenetic Map2q32.1NCBI
HuRef2175,647,499 - 175,761,404 (-)NCBIHuRef
CHM1_12183,795,489 - 183,909,486 (-)NCBICHM1_1
T2T-CHM13v2.02183,398,094 - 183,527,479 (-)NCBIT2T-CHM13v2.0
Nckap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39280,330,856 - 80,411,526 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl280,330,856 - 80,411,724 (-)EnsemblGRCm39 Ensembl
GRCm38280,500,512 - 80,581,182 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl280,500,512 - 80,581,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37280,341,452 - 80,421,122 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36280,302,134 - 80,381,804 (-)NCBIMGSCv36mm8
Celera282,167,966 - 82,247,538 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map248.21NCBI
Nckap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8385,824,333 - 85,898,748 (-)NCBIGRCr8
mRatBN7.2365,417,450 - 65,491,769 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl365,417,453 - 65,492,217 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx368,763,734 - 68,838,101 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0377,347,303 - 77,421,669 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0375,110,005 - 75,184,226 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0367,725,180 - 67,804,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl367,725,947 - 67,787,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0374,284,277 - 74,361,208 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4363,191,700 - 63,274,021 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1363,099,188 - 63,170,297 (-)NCBI
Celera364,863,664 - 64,938,000 (-)NCBICelera
Cytogenetic Map3q24NCBI
Nckap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540314,480,162 - 14,554,702 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540314,476,689 - 14,554,380 (+)NCBIChiLan1.0ChiLan1.0
NCKAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21385,580,366 - 85,697,222 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B85,595,344 - 85,712,200 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B70,193,950 - 70,308,442 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B188,003,235 - 188,116,704 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B188,003,235 - 188,116,710 (-)Ensemblpanpan1.1panPan2
NCKAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13625,965,243 - 26,054,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3625,965,938 - 26,054,760 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3625,862,726 - 25,966,235 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03626,119,068 - 26,222,536 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3626,119,080 - 26,222,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13626,245,261 - 26,348,621 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03626,176,339 - 26,279,633 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03626,318,225 - 26,421,624 (-)NCBIUU_Cfam_GSD_1.0
Nckap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303142,971,863 - 143,070,930 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650911,524,556 - 11,624,621 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650911,525,764 - 11,624,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCKAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1588,425,142 - 88,528,326 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11588,425,861 - 88,528,417 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21597,930,698 - 98,032,893 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Nckap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248444,676,741 - 4,773,538 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248444,679,840 - 4,773,617 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000010735   ⟹   ENSCSAP00000008824
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1068,433,258 - 68,545,990 (-)Ensembl
RefSeq Acc Id: XM_007965561   ⟹   XP_007963752
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11068,434,839 - 68,546,431 (-)NCBI
Vero_WHO_p1.0NW_023666040130,996,820 - 131,108,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007965562   ⟹   XP_007963753
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11068,434,846 - 68,545,780 (-)NCBI
Vero_WHO_p1.0NW_023666040130,997,187 - 131,108,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007965563   ⟹   XP_007963754
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11068,434,839 - 68,546,431 (-)NCBI
Vero_WHO_p1.0NW_023666040130,997,215 - 131,108,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007965564   ⟹   XP_007963755
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11068,434,846 - 68,545,780 (-)NCBI
Vero_WHO_p1.0NW_023666040130,997,215 - 131,108,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038001877   ⟹   XP_037857805
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666040130,997,187 - 131,108,402 (+)NCBI
RefSeq Acc Id: XP_007963754   ⟸   XM_007965563
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RJN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007963752   ⟸   XM_007965561
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007963755   ⟸   XM_007965564
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007963753   ⟸   XM_007965562
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000008824   ⟸   ENSCSAT00000010735
RefSeq Acc Id: XP_037857805   ⟸   XM_038001877
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012646 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010735.1 UniProtKB/TrEMBL
InterPro Nck-associated_protein-1 UniProtKB/TrEMBL
NCBI Gene NCKAP1 ENTREZGENE
PANTHER NCK-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR12093 UniProtKB/TrEMBL
Pfam Nckap1 UniProtKB/TrEMBL
UniProt A0A0D9RJN5 ENTREZGENE, UniProtKB/TrEMBL