Nckap1 (NCK associated protein 1) - Rat Genome Database

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Gene: Nckap1 (NCK associated protein 1) Ictidomys tridecemlineatus
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Symbol: Nckap1
Name: NCK associated protein 1
RGD ID: 12555039
Description: ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN apical protein localization (ortholog); basal protein localization (ortholog); cell migration involved in gastrulation (ortholog); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Developmental Disabilities (ortholog); FOUND IN filamentous actin (ortholog); lamellipodium (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NCK associated protein 1, transcript variant X1; NCK associated protein 1, transcript variant X2; NCK associated protein 1, transcript variant X3; NCK associated protein 1, transcript variant X4; nck-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303142,971,863 - 143,070,930 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650911,524,556 - 11,624,621 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650911,525,764 - 11,624,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nckap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303142,971,863 - 143,070,930 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650911,524,556 - 11,624,621 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650911,525,764 - 11,624,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCKAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382182,909,115 - 183,038,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2182,909,115 - 183,038,858 (-)EnsemblGRCh38hg38GRCh38
GRCh372183,773,843 - 183,903,185 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362183,497,850 - 183,611,474 (-)NCBINCBI36Build 36hg18NCBI36
Build 342183,615,110 - 183,728,735NCBI
Celera2177,385,839 - 177,499,386 (-)NCBICelera
Cytogenetic Map2q32.1NCBI
HuRef2175,647,499 - 175,761,404 (-)NCBIHuRef
CHM1_12183,795,489 - 183,909,486 (-)NCBICHM1_1
T2T-CHM13v2.02183,398,094 - 183,527,479 (-)NCBIT2T-CHM13v2.0
Nckap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39280,330,856 - 80,411,526 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl280,330,856 - 80,411,724 (-)EnsemblGRCm39 Ensembl
GRCm38280,500,512 - 80,581,182 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl280,500,512 - 80,581,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37280,341,452 - 80,421,122 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36280,302,134 - 80,381,804 (-)NCBIMGSCv36mm8
Celera282,167,966 - 82,247,538 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map248.21NCBI
Nckap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8385,824,333 - 85,898,748 (-)NCBIGRCr8
mRatBN7.2365,417,450 - 65,491,769 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl365,417,453 - 65,492,217 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx368,763,734 - 68,838,101 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0377,347,303 - 77,421,669 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0375,110,005 - 75,184,226 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0367,725,180 - 67,804,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl367,725,947 - 67,787,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0374,284,277 - 74,361,208 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4363,191,700 - 63,274,021 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1363,099,188 - 63,170,297 (-)NCBI
Celera364,863,664 - 64,938,000 (-)NCBICelera
Cytogenetic Map3q24NCBI
Nckap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540314,480,162 - 14,554,702 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540314,476,689 - 14,554,380 (+)NCBIChiLan1.0ChiLan1.0
NCKAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21385,580,366 - 85,697,222 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B85,595,344 - 85,712,200 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B70,193,950 - 70,308,442 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B188,003,235 - 188,116,704 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B188,003,235 - 188,116,710 (-)Ensemblpanpan1.1panPan2
NCKAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13625,965,243 - 26,054,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3625,965,938 - 26,054,760 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3625,862,726 - 25,966,235 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03626,119,068 - 26,222,536 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3626,119,080 - 26,222,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13626,245,261 - 26,348,621 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03626,176,339 - 26,279,633 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03626,318,225 - 26,421,624 (-)NCBIUU_Cfam_GSD_1.0
NCKAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1588,425,142 - 88,528,326 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11588,425,861 - 88,528,417 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21597,930,698 - 98,032,893 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCKAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11068,434,839 - 68,546,431 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1068,433,258 - 68,545,990 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040130,996,820 - 131,108,402 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nckap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248444,676,741 - 4,773,538 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248444,679,840 - 4,773,617 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000000698   ⟹   ENSSTOP00000000627
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650911,524,556 - 11,624,621 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000026639   ⟹   ENSSTOP00000021224
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650911,524,556 - 11,624,621 (-)Ensembl
RefSeq Acc Id: XM_005324684   ⟹   XP_005324741
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303142,971,866 - 143,070,457 (-)NCBI
SpeTri2.0NW_00493650911,525,764 - 11,624,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013358297   ⟹   XP_013213751
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303142,972,666 - 143,070,192 (-)NCBI
SpeTri2.0NW_00493650911,525,772 - 11,624,435 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725978   ⟹   XP_021581653
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303142,971,863 - 143,070,930 (-)NCBI
SpeTri2.0NW_00493650911,525,772 - 11,624,828 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725979   ⟹   XP_021581654
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303142,972,666 - 143,070,192 (-)NCBI
SpeTri2.0NW_00493650911,525,772 - 11,624,340 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005324741   ⟸   XM_005324684
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013213751   ⟸   XM_013358297
- Peptide Label: isoform X4
- UniProtKB: I3LX66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581653   ⟸   XM_021725978
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021581654   ⟸   XM_021725979
- Peptide Label: isoform X2
- UniProtKB: I3NA27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000627   ⟸   ENSSTOT00000000698
RefSeq Acc Id: ENSSTOP00000021224   ⟸   ENSSTOT00000026639


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000691 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000698.3 UniProtKB/TrEMBL
  ENSSTOT00000026639.2 UniProtKB/TrEMBL
InterPro Nck-associated_protein-1 UniProtKB/TrEMBL
NCBI Gene Nckap1 ENTREZGENE
PANTHER NCK-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR12093 UniProtKB/TrEMBL
Pfam Nckap1 UniProtKB/TrEMBL
UniProt I3LX66 ENTREZGENE, UniProtKB/TrEMBL
  I3NA27 ENTREZGENE, UniProtKB/TrEMBL