NCKAP1 (NCK associated protein 1) - Rat Genome Database

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Gene: NCKAP1 (NCK associated protein 1) Sus scrofa
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Symbol: NCKAP1
Name: NCK associated protein 1
RGD ID: 14256374
Description: ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN apical protein localization (ortholog); basal protein localization (ortholog); cell migration involved in gastrulation (ortholog); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Developmental Disabilities (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN filamentous actin (ortholog); lamellipodium (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nck-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1588,425,141 - 88,528,231 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11588,425,861 - 88,528,417 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21597,930,698 - 98,032,893 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
NCKAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1588,425,141 - 88,528,231 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11588,425,861 - 88,528,417 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21597,930,698 - 98,032,893 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCKAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2182,909,115 - 183,038,858 (-)EnsemblGRCh38hg38GRCh38
GRCh382182,909,115 - 183,038,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372183,773,843 - 183,903,185 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362183,497,850 - 183,611,474 (-)NCBINCBI36hg18NCBI36
Build 342183,615,110 - 183,728,735NCBI
Celera2177,385,839 - 177,499,386 (-)NCBI
Cytogenetic Map2q32.1NCBI
HuRef2175,647,499 - 175,761,404 (-)NCBIHuRef
CHM1_12183,795,489 - 183,909,486 (-)NCBICHM1_1
Nckap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39280,330,856 - 80,411,526 (-)NCBIGRCm39mm39
GRCm39 Ensembl280,330,856 - 80,411,724 (-)Ensembl
GRCm38280,500,512 - 80,581,182 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl280,500,512 - 80,581,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37280,341,452 - 80,421,122 (-)NCBIGRCm37mm9NCBIm37
MGSCv36280,302,134 - 80,381,804 (-)NCBImm8
Celera282,167,966 - 82,247,538 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map248.21NCBI
Nckap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2365,417,450 - 65,491,769 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl365,417,453 - 65,492,217 (-)Ensembl
Rnor_6.0367,725,180 - 67,804,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl367,725,947 - 67,787,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0374,284,277 - 74,361,208 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4363,191,700 - 63,274,021 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1363,099,188 - 63,170,297 (-)NCBI
Celera364,863,664 - 64,938,000 (-)NCBICelera
Cytogenetic Map3q24NCBI
Nckap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540314,480,162 - 14,554,702 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540314,476,689 - 14,554,380 (+)NCBIChiLan1.0ChiLan1.0
NCKAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B188,003,235 - 188,116,704 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B188,003,235 - 188,116,710 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B70,193,950 - 70,308,442 (-)NCBIMhudiblu_PPA_v0panPan3
NCKAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13625,965,243 - 26,054,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3625,965,938 - 26,054,760 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3625,862,726 - 25,966,235 (-)NCBI
ROS_Cfam_1.03626,119,068 - 26,222,536 (-)NCBI
UMICH_Zoey_3.13626,245,261 - 26,348,621 (-)NCBI
UNSW_CanFamBas_1.03626,176,339 - 26,279,633 (-)NCBI
UU_Cfam_GSD_1.03626,318,225 - 26,421,624 (-)NCBI
Nckap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303142,971,863 - 143,070,930 (-)NCBI
SpeTri2.0NW_00493650911,525,764 - 11,624,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCKAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11068,434,839 - 68,546,431 (-)NCBI
ChlSab1.1 Ensembl1068,433,258 - 68,545,990 (-)Ensembl
Vero_WHO_p1.0NW_023666040130,996,820 - 131,108,402 (+)NCBI
Nckap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248444,679,840 - 4,773,617 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 1
Low 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000017442   ⟹   ENSSSCP00000016973
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1588,425,141 - 88,491,465 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000046639   ⟹   ENSSSCP00000044211
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1588,425,141 - 88,528,088 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053703   ⟹   ENSSSCP00000058212
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1588,427,308 - 88,528,231 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000055458   ⟹   ENSSSCP00000040828
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1588,425,141 - 88,528,088 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079749   ⟹   ENSSSCP00000065088
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1588,425,141 - 88,492,326 (-)Ensembl
RefSeq Acc Id: XM_003359581   ⟹   XP_003359629
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11588,425,861 - 88,528,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003359582   ⟹   XP_003359630
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11588,425,861 - 88,528,249 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021075812   ⟹   XP_020931471
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11588,425,861 - 88,528,221 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021075813   ⟹   XP_020931472
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11588,425,861 - 88,528,231 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021075814   ⟹   XP_020931473
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11588,425,861 - 88,491,480 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_003359629   ⟸   XM_003359581
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003359630   ⟸   XM_003359582
- Peptide Label: isoform X1
- UniProtKB: A0A287AJY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931472   ⟸   XM_021075813
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020931471   ⟸   XM_021075812
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020931473   ⟸   XM_021075814
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSSSCP00000065088   ⟸   ENSSSCT00000079749
RefSeq Acc Id: ENSSSCP00000040828   ⟸   ENSSSCT00000055458
RefSeq Acc Id: ENSSSCP00000016973   ⟸   ENSSSCT00000017442
RefSeq Acc Id: ENSSSCP00000044211   ⟸   ENSSSCT00000046639
RefSeq Acc Id: ENSSSCP00000058212   ⟸   ENSSSCT00000053703


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016019 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070003131 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000016973 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000040828 UniProtKB/TrEMBL
  ENSSSCP00000044211 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000058212 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000065088 UniProtKB/TrEMBL
  ENSSSCP00070005288 UniProtKB/TrEMBL
  ENSSSCP00070005298 UniProtKB/TrEMBL
  ENSSSCP00070005329 UniProtKB/TrEMBL
  ENSSSCP00070005412 UniProtKB/TrEMBL
  ENSSSCP00070005418 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017442 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000046639 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000053703 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000055458 UniProtKB/TrEMBL
  ENSSSCT00000079749 UniProtKB/TrEMBL
  ENSSSCT00070006496 UniProtKB/TrEMBL
  ENSSSCT00070006508 UniProtKB/TrEMBL
  ENSSSCT00070006542 UniProtKB/TrEMBL
  ENSSSCT00070006637 UniProtKB/TrEMBL
  ENSSSCT00070006646 UniProtKB/TrEMBL
InterPro Nck-associated_protein-1 UniProtKB/TrEMBL
KEGG Report ssc:100158033 UniProtKB/TrEMBL
NCBI Gene NCKAP1 ENTREZGENE
PANTHER PTHR12093 UniProtKB/TrEMBL
Pfam Nckap1 UniProtKB/TrEMBL
UniProt A0A287AAK8_PIG UniProtKB/TrEMBL
  A0A287AJY4 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BQ29_PIG UniProtKB/TrEMBL
  A0A4X1SRB3_PIG UniProtKB/TrEMBL
  A0A4X1SRC5_PIG UniProtKB/TrEMBL
  A0A4X1SRE6_PIG UniProtKB/TrEMBL
  A0A4X1SRL5_PIG UniProtKB/TrEMBL
  A0A4X1SSL5_PIG UniProtKB/TrEMBL
  A0A5G2QKN1_PIG UniProtKB/TrEMBL
  F1RYL3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:96432 ENTREZGENE