Nckap1 (NCK-associated protein 1) - Rat Genome Database
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Gene: Nckap1 (NCK-associated protein 1) Mus musculus
Analyze
Symbol: Nckap1
Name: NCK-associated protein 1
RGD ID: 62232
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; genitourinary system; immune system; nervous system; and sensory organ. Orthologous to human NCKAP1 (NCK associated protein 1); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: brain protein H19; C79304; H19; Hem-2; Hem2; membrane-associated protein HEM-2; mh19; mKIAA0587; N; NAP 1; Nap1; p125Nap1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39280,330,856 - 80,411,526 (-)NCBIGRCm39mm39
GRCm39 Ensembl280,330,856 - 80,411,724 (-)Ensembl
GRCm38280,500,512 - 80,581,182 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl280,500,512 - 80,581,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37280,341,452 - 80,421,122 (-)NCBIGRCm37mm9NCBIm37
MGSCv36280,302,134 - 80,381,804 (-)NCBImm8
Celera282,167,966 - 82,247,538 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map248.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7643388   PMID:9463375   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12106288   PMID:12466851   PMID:12477932   PMID:12520002  
PMID:12693553   PMID:14610273   PMID:14765121   PMID:15489334   PMID:15747579   PMID:15755804   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16512683   PMID:16602821   PMID:16831833  
PMID:17481396   PMID:18644894   PMID:18799693   PMID:19015308   PMID:19521500   PMID:19706686   PMID:20114047   PMID:20689803   PMID:21267068   PMID:21693517   PMID:21873635   PMID:21945075  
PMID:21946561   PMID:22384391   PMID:24050404   PMID:24161570   PMID:24457600   PMID:24952961   PMID:26365490   PMID:27507650   PMID:27927633   PMID:28671696   PMID:28706196   PMID:29111324  
PMID:30068389   PMID:30562941   PMID:32325033   PMID:32581705  


Genomics

Comparative Map Data
Nckap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39280,330,856 - 80,411,526 (-)NCBIGRCm39mm39
GRCm39 Ensembl280,330,856 - 80,411,724 (-)Ensembl
GRCm38280,500,512 - 80,581,182 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl280,500,512 - 80,581,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37280,341,452 - 80,421,122 (-)NCBIGRCm37mm9NCBIm37
MGSCv36280,302,134 - 80,381,804 (-)NCBImm8
Celera282,167,966 - 82,247,538 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map248.21NCBI
NCKAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2182,909,115 - 183,038,858 (-)EnsemblGRCh38hg38GRCh38
GRCh382182,909,115 - 183,038,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372183,773,843 - 183,903,185 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362183,497,850 - 183,611,474 (-)NCBINCBI36hg18NCBI36
Build 342183,615,110 - 183,728,735NCBI
Celera2177,385,839 - 177,499,386 (-)NCBI
Cytogenetic Map2q32.1NCBI
HuRef2175,647,499 - 175,761,404 (-)NCBIHuRef
CHM1_12183,795,489 - 183,909,486 (-)NCBICHM1_1
Nckap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2365,417,450 - 65,491,769 (-)NCBI
Rnor_6.0 Ensembl367,725,947 - 67,787,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0367,725,180 - 67,804,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0374,284,277 - 74,361,208 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4363,191,700 - 63,274,021 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1363,099,188 - 63,170,297 (-)NCBI
Celera364,863,664 - 64,938,000 (-)NCBICelera
Cytogenetic Map3q24NCBI
Nckap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540314,480,162 - 14,554,702 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540314,476,689 - 14,554,380 (+)NCBIChiLan1.0ChiLan1.0
NCKAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B188,003,235 - 188,116,704 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B188,003,235 - 188,116,710 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B70,193,950 - 70,308,442 (-)NCBIMhudiblu_PPA_v0panPan3
NCKAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3625,965,938 - 26,054,760 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13625,965,243 - 26,054,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nckap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493650911,525,764 - 11,624,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCKAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1588,425,141 - 88,528,231 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11588,425,861 - 88,528,417 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21597,930,698 - 98,032,893 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCKAP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11068,434,839 - 68,546,431 (-)NCBI
ChlSab1.1 Ensembl1068,433,258 - 68,545,990 (-)Ensembl
Nckap1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248444,679,840 - 4,773,617 (-)NCBI

Position Markers
G67007  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38280,506,275 - 80,506,846UniSTSGRCm38
MGSCv37280,346,432 - 80,347,003UniSTSGRCm37
Celera282,172,930 - 82,173,501UniSTS
Cytogenetic Map2C3UniSTS
cM Map248.0UniSTS
UniSTS:234438  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38280,568,938 - 80,569,193UniSTSGRCm38
MGSCv37280,409,095 - 80,409,350UniSTSGRCm37
Celera282,235,412 - 82,235,669UniSTS
Cytogenetic Map2C3UniSTS
cM Map248.0UniSTS
UniSTS:224588  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38280,508,717 - 80,508,794UniSTSGRCm38
MGSCv37280,348,874 - 80,348,951UniSTSGRCm37
Celera282,175,376 - 82,175,453UniSTS
Cytogenetic Map2C3UniSTS
cM Map248.0UniSTS
Nckap1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C3UniSTS
cM Map248.0UniSTS
RH126650  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38280,500,638 - 80,500,859UniSTSGRCm38
MGSCv37280,340,795 - 80,341,016UniSTSGRCm37
Celera282,167,309 - 82,167,530UniSTS
Cytogenetic Map2C3UniSTS
cM Map248.0UniSTS
Whitehead/MRC_RH21348.76UniSTS
AW822080  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38280,520,892 - 80,521,034UniSTSGRCm38
MGSCv37280,361,049 - 80,361,191UniSTSGRCm37
Celera282,187,516 - 82,187,658UniSTS
Cytogenetic Map2C3UniSTS
cM Map248.0UniSTS
Whitehead/MRC_RH21347.75UniSTS
AW822085  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38280,520,892 - 80,521,032UniSTSGRCm38
MGSCv37280,361,049 - 80,361,189UniSTSGRCm37
Celera282,187,516 - 82,187,656UniSTS
Cytogenetic Map2C3UniSTS
cM Map248.0UniSTS
Whitehead/MRC_RH21347.75UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388608993591306Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357829Lvrq1_mliver weight QTL 1 (mouse)Not determined220892967119064359Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220892967119064359Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220892967119064359Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220892967119064359Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220892967119064359Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22771204884183040Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31324555105313225Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240995481115079684Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245457623145470727Mouse
4141809Pbwg1.1_mpostnatal body weight growth 1.1 (mouse)Not determined4830206882302151Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24830206882302151Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24843940282439590Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24843940282439590Mouse
1302085Mobe1_mmodifier of obesity 1 (mouse)Not determined24843940282439590Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24843940282439590Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174843940282439590Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25098897084988970Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25109283185092934Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25187293285873081Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25261767586617792Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25261767586617792Mouse
4142299Pbwg1.4_mpostnatal body weight growth 1.4 (mouse)Not determined5562407289624172Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25769377391693944Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25808964792089647Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260690268119525037Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)262000000137000000Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26317561097175769Mouse
1301405Etohr_methanol response acute (mouse)Not determined26317561097175769Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26317561097175769Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26317561097175769Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26317561097175769Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26317561097175769Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26373981097739957Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267817543101817798Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267817543101817798Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268893925102894063Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268893925102894063Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74693773114293051Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274693773129371085Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276591138110591306Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276848414103265478Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:721
Count of miRNA genes:408
Interacting mature miRNAs:462
Transcripts:ENSMUST00000028386, ENSMUST00000111760, ENSMUST00000131872, ENSMUST00000134587, ENSMUST00000154793
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ534525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP764873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU055892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X61453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000028386   ⟹   ENSMUSP00000028386
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl280,500,512 - 80,581,264 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111760   ⟹   ENSMUSP00000107390
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl280,500,518 - 80,581,380 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131872
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl280,545,113 - 80,555,070 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134587
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl280,548,933 - 80,554,790 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154793
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl280,506,891 - 80,525,680 (-)Ensembl
RefSeq Acc Id: NM_001290745   ⟹   NP_001277674
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39280,330,856 - 80,411,526 (-)NCBI
GRCm38280,500,512 - 80,581,182 (-)NCBI
Celera282,167,183 - 82,247,755 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355410   ⟹   NP_001342339
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39280,330,856 - 80,411,526 (-)NCBI
GRCm38280,500,512 - 80,581,182 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355411   ⟹   NP_001342340
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39280,330,856 - 80,411,526 (-)NCBI
GRCm38280,500,512 - 80,581,182 (-)NCBI
Sequence:
RefSeq Acc Id: NM_016965   ⟹   NP_058661
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39280,330,856 - 80,411,526 (-)NCBI
GRCm38280,500,512 - 80,581,182 (-)NCBI
MGSCv37280,341,452 - 80,421,122 (-)RGD
Celera282,167,183 - 82,247,755 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058661   ⟸   NM_016965
- Peptide Label: isoform b
- UniProtKB: P28660 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277674   ⟸   NM_001290745
- Peptide Label: isoform a
- UniProtKB: A1L0U6 (UniProtKB/TrEMBL),   A2AS98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342340   ⟸   NM_001355411
- Peptide Label: isoform d
RefSeq Acc Id: NP_001342339   ⟸   NM_001355410
- Peptide Label: isoform c
RefSeq Acc Id: ENSMUSP00000107390   ⟸   ENSMUST00000111760
RefSeq Acc Id: ENSMUSP00000028386   ⟸   ENSMUST00000028386

Promoters
RGD ID:6831884
Promoter ID:MM_KWN:29910
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   ES_Cell,   Liver,   Lung,   MEF_B6
Transcripts:ENSMUST00000111759,   OTTMUST00000032324,   OTTMUST00000032325
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36280,421,171 - 80,421,787 (-)MPROMDB
RGD ID:6877760
Promoter ID:EPDNEW_M2331
Type:initiation region
Name:Nckap1_1
Description:Mus musculus NCK-associated protein 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38280,581,251 - 80,581,311EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1355333 AgrOrtholog
Ensembl Genes ENSMUSG00000027002 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000028386 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107390 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028386 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111760 ENTREZGENE, UniProtKB/TrEMBL
InterPro Nck-associated_protein-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:50884 UniProtKB/Swiss-Prot
MGD MGI:1355333 ENTREZGENE
NCBI Gene 50884 ENTREZGENE
PANTHER PTHR12093 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nckap1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nckap1 PhenoGen
UniProt A1L0U6 ENTREZGENE, UniProtKB/TrEMBL
  A2AS98 ENTREZGENE, UniProtKB/TrEMBL
  NCKP1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3UPY6 UniProtKB/Swiss-Prot
  Q80TX0 UniProtKB/Swiss-Prot
  Q8CG49 UniProtKB/Swiss-Prot
  Q99KY0 UniProtKB/Swiss-Prot