CACNA1I (calcium voltage-gated channel subunit alpha1 I) - Rat Genome Database

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Gene: CACNA1I (calcium voltage-gated channel subunit alpha1 I) Chlorocebus sabaeus
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Symbol: CACNA1I
Name: calcium voltage-gated channel subunit alpha1 I
RGD ID: 18558100
Description: ENCODES a protein that exhibits low voltage-gated calcium channel activity (ortholog); INVOLVED IN calcium ion import (ortholog); calcium ion transport (ortholog); calcium ion transport into cytosol (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Developmental Disabilities (ortholog); hydrocephalus (ortholog); FOUND IN membrane (inferred); monoatomic ion channel complex (inferred); voltage-gated calcium channel complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent T-type calcium channel subunit alpha-1I
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11922,129,795 - 22,264,485 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1922,143,980 - 22,261,098 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,346,665 - 103,503,501 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CACNA1I
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11922,129,795 - 22,264,485 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1922,143,980 - 22,261,098 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,346,665 - 103,503,501 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CACNA1I
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,570,753 - 39,689,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,570,753 - 39,689,735 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,966,758 - 40,085,740 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,296,704 - 38,415,686 (+)NCBINCBI36Build 36hg18NCBI36
Build 342238,291,257 - 38,410,238NCBI
Celera2223,768,830 - 23,887,794 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,931,166 - 23,048,848 (+)NCBIHuRef
CHM1_12239,925,499 - 40,044,841 (+)NCBICHM1_1
T2T-CHM13v2.02240,041,540 - 40,160,675 (+)NCBIT2T-CHM13v2.0
Cacna1i
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391580,171,439 - 80,282,493 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1580,171,439 - 80,282,480 (+)EnsemblGRCm39 Ensembl
GRCm381580,287,238 - 80,398,292 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,287,238 - 80,398,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv371580,117,668 - 80,228,722 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361580,114,300 - 80,225,547 (+)NCBIMGSCv36mm8
Celera1582,404,367 - 82,516,148 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Cacna1i
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,716,266 - 113,827,670 (+)NCBIGRCr8
mRatBN7.27111,835,996 - 111,947,418 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,836,012 - 111,944,688 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,591,130 - 113,702,387 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,814,660 - 115,925,924 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,784,029 - 115,895,287 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,521,787 - 121,619,300 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,511,097 - 121,619,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,509,362 - 121,609,542 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,582,279 - 118,681,537 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,604,777 - 118,715,750 (+)NCBI
Celera7108,173,442 - 108,270,677 (+)NCBICelera
Cytogenetic Map7q34NCBI
Cacna1i
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541325,453,703 - 25,535,530 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541325,440,533 - 25,538,367 (+)NCBIChiLan1.0ChiLan1.0
CACNA1I
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22349,404,522 - 49,536,330 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12252,095,860 - 52,227,638 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02220,463,511 - 20,595,253 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12238,325,411 - 38,412,923 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2238,296,436 - 38,414,963 (+)Ensemblpanpan1.1panPan2
CACNA1I
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,381,446 - 25,493,680 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,380,943 - 25,482,852 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1025,317,909 - 25,429,936 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,133,456 - 26,245,748 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,134,925 - 26,234,803 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11025,845,366 - 25,946,629 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,167,842 - 26,279,957 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,337,549 - 26,455,352 (-)NCBIUU_Cfam_GSD_1.0
Cacna1i
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049458,980,016 - 9,035,382 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364921,998,793 - 2,075,257 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364921,990,430 - 2,030,744 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1I
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,595,909 - 8,701,367 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.158,593,014 - 8,702,734 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.255,894,595 - 6,011,363 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cacna1i
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247528,705,149 - 8,785,272 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247528,702,320 - 8,795,192 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
75 35 19 34 34 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000004127   ⟹   ENSCSAP00000002389
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1922,143,980 - 22,261,098 (+)Ensembl
RefSeq Acc Id: XM_007975846   ⟹   XP_007974037
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11922,129,795 - 22,264,485 (+)NCBI
Vero_WHO_p1.0NW_023666045103,346,665 - 103,503,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038007415   ⟹   XP_037863343
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045103,346,665 - 103,503,501 (-)NCBI
RefSeq Acc Id: XM_038007417   ⟹   XP_037863345
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045103,346,665 - 103,503,501 (-)NCBI
RefSeq Acc Id: XM_038007418   ⟹   XP_037863346
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045103,351,254 - 103,503,501 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007974037 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863343 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863345 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863346 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002389
  ENSCSAP00000002389.1
RefSeq Acc Id: XP_007974037   ⟸   XM_007975846
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R1A0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000002389   ⟸   ENSCSAT00000004127
RefSeq Acc Id: XP_037863345   ⟸   XM_038007417
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R1A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037863343   ⟸   XM_038007415
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R1A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037863346   ⟸   XM_038007418
- Peptide Label: isoform X4
- UniProtKB: A0A0D9R1A0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006219 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004127.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  VDCC_T_a1 UniProtKB/TrEMBL
  VDCCAlpha1 UniProtKB/TrEMBL
  VGCC_Ca_Na UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene CACNA1I ENTREZGENE
PANTHER PTHR10037 UniProtKB/TrEMBL
  PTHR10037:SF209 UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
PRINTS CACHANNEL UniProtKB/TrEMBL
  TVDCCALPHA1 UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A0D9R1A0 ENTREZGENE, UniProtKB/TrEMBL