CTNNA1 (catenin alpha 1) - Rat Genome Database

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Gene: CTNNA1 (catenin alpha 1) Chlorocebus sabaeus
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Symbol: CTNNA1
Name: catenin alpha 1
RGD ID: 18429375
Description: ENCODES a protein that exhibits beta-catenin binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN apical junction assembly (ortholog); apoptotic process (ortholog); axon regeneration (ortholog); PARTICIPATES IN E-cadherin signaling pathway; N-cadherin signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); autosomal dominant intellectual developmental disorder 31 (ortholog); Breast Neoplasms (ortholog); FOUND IN acrosomal vesicle (ortholog); adherens junction (ortholog); cell-cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: catenin alpha-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12341,423,504 - 41,599,458 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2341,447,675 - 41,600,190 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603436,284,586 - 36,461,261 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CTNNA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12341,423,504 - 41,599,458 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2341,447,675 - 41,600,190 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603436,284,586 - 36,461,261 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CTNNA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385138,753,425 - 138,935,034 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5138,610,967 - 138,935,034 (+)EnsemblGRCh38hg38GRCh38
GRCh375138,089,114 - 138,270,723 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365138,117,006 - 138,298,622 (+)NCBINCBI36Build 36hg18NCBI36
Build 345138,117,005 - 138,298,621NCBI
Celera5134,210,957 - 134,392,494 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5133,278,985 - 133,460,517 (+)NCBIHuRef
CHM1_15137,521,762 - 137,703,280 (+)NCBICHM1_1
T2T-CHM13v2.05139,279,620 - 139,461,169 (+)NCBIT2T-CHM13v2.0
Ctnna1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391835,251,955 - 35,387,829 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1835,251,912 - 35,387,832 (+)EnsemblGRCm39 Ensembl
GRCm381835,118,902 - 35,254,776 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1835,118,859 - 35,254,779 (+)EnsemblGRCm38mm10GRCm38
MGSCv371835,278,566 - 35,414,429 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361835,244,886 - 35,380,749 (+)NCBIMGSCv36mm8
Celera1835,608,364 - 35,710,407 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.89NCBI
Ctnna1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81827,002,330 - 27,135,009 (+)NCBIGRCr8
mRatBN7.21826,728,246 - 26,860,911 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,728,485 - 26,860,910 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,855,902 - 26,988,304 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01827,618,824 - 27,751,220 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01826,953,728 - 27,086,125 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01827,923,229 - 28,055,972 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,923,572 - 28,055,960 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01827,633,009 - 27,766,069 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41827,629,915 - 27,769,360 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11827,656,560 - 27,796,004 (+)NCBI
Celera1826,463,736 - 26,596,152 (+)NCBICelera
Cytogenetic Map18p11NCBI
Ctnna1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554181,592,229 - 1,754,689 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554181,592,555 - 1,754,423 (-)NCBIChiLan1.0ChiLan1.0
CTNNA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24134,030,560 - 134,208,877 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15132,170,119 - 132,348,741 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05134,134,944 - 134,313,239 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15140,261,883 - 140,438,854 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5140,261,883 - 140,438,547 (+)Ensemblpanpan1.1panPan2
CTNNA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11126,273,322 - 26,459,497 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1126,143,013 - 26,459,091 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1125,040,958 - 25,226,366 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01127,129,159 - 27,315,090 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1126,999,426 - 27,328,806 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,836,828 - 26,022,382 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01125,658,855 - 25,844,720 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01126,323,192 - 26,509,271 (+)NCBIUU_Cfam_GSD_1.0
Ctnna1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213153,575,485 - 153,790,091 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,865,820 - 8,037,935 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,865,907 - 8,036,020 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTNNA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,682,371 - 140,871,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,682,776 - 140,869,828 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22146,440,632 - 146,624,719 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ctnna1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474331,512,481 - 31,700,340 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CTNNA1
2866 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000011191   ⟹   ENSCSAP00000009270
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2341,447,675 - 41,600,190 (+)Ensembl
RefSeq Acc Id: XM_008014554   ⟹   XP_008012745
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12341,423,504 - 41,599,458 (+)NCBI
Vero_WHO_p1.0NW_02366603436,284,586 - 36,461,261 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008014556   ⟹   XP_008012747
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12341,540,239 - 41,599,458 (+)NCBI
Vero_WHO_p1.0NW_02366603436,284,857 - 36,344,424 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008014557   ⟹   XP_008012748
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12341,540,601 - 41,599,458 (+)NCBI
Vero_WHO_p1.0NW_02366603436,284,774 - 36,344,254 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038007355   ⟹   XP_037863283
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603436,284,774 - 36,461,226 (-)NCBI
RefSeq Acc Id: XM_038007356   ⟹   XP_037863284
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603436,284,774 - 36,443,660 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008012745 (Get FASTA)   NCBI Sequence Viewer  
  XP_008012747 (Get FASTA)   NCBI Sequence Viewer  
  XP_008012748 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863283 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863284 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009270.1
RefSeq Acc Id: XP_008012745   ⟸   XM_008014554
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RKY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008012747   ⟸   XM_008014556
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008012748   ⟸   XM_008014557
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000009270   ⟸   ENSCSAT00000011191
RefSeq Acc Id: XP_037863283   ⟸   XM_038007355
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RKY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037863284   ⟸   XM_038007356
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RKY1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013096 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011191.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.2510 UniProtKB/TrEMBL
  Alpha-catenin/vinculin-like UniProtKB/TrEMBL
InterPro Alpha-catenin/vinculin-like_sf UniProtKB/TrEMBL
  Alpha_catenin UniProtKB/TrEMBL
  Vinculin/catenin UniProtKB/TrEMBL
  Vinculin_CS UniProtKB/TrEMBL
KEGG Report csab:103244602 UniProtKB/TrEMBL
NCBI Gene CTNNA1 ENTREZGENE
PANTHER ALPHA CATENIN UniProtKB/TrEMBL
  PTHR18914:SF24 UniProtKB/TrEMBL
Pfam Vinculin UniProtKB/TrEMBL
PRINTS ALPHACATENIN UniProtKB/TrEMBL
PROSITE VINCULIN_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF47220 UniProtKB/TrEMBL
UniProt A0A0D9RKY1 ENTREZGENE, UniProtKB/TrEMBL