Rplp1-ps1 (ribosomal protein lateral stalk subunit P1, pseudogene 1) - Rat Genome Database

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Gene: Rplp1-ps1 (ribosomal protein lateral stalk subunit P1, pseudogene 1) Rattus norvegicus
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Symbol: Rplp1-ps1
Name: ribosomal protein lateral stalk subunit P1, pseudogene 1
RGD ID: 1562461
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC503251; RGD1562461; similar to 60S acidic ribosomal protein P1
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8944,345,833 - 44,351,404 (+)NCBIGRCr8
mRatBN7.2936,849,932 - 36,855,302 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0941,148,633 - 41,154,006 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0940,786,388 - 40,823,408 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4933,352,448 - 33,389,430 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera934,634,894 - 34,640,266 (+)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
D9Mgh8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2936,840,385 - 36,840,608 (+)MAPPERmRatBN7.2
Rnor_6.0941,139,089 - 41,139,311NCBIRnor6.0
Rnor_5.0940,808,491 - 40,808,713UniSTSRnor5.0
RGSC_v3.4933,374,546 - 33,374,769RGDRGSC3.4
RGSC_v3.4933,374,547 - 33,374,769UniSTSRGSC3.4
RGSC_v3.1933,375,961 - 33,376,183RGD
Celera934,625,350 - 34,625,572UniSTS
RH 3.4 Map9352.1UniSTS
RH 3.4 Map9352.1RGD
RH 2.0 Map9355.0RGD
Cytogenetic Map9q21UniSTS
AU047248  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2936,824,894 - 36,825,154 (+)MAPPERmRatBN7.2
Rnor_6.0941,123,600 - 41,123,859NCBIRnor6.0
Rnor_5.0940,793,002 - 40,793,261UniSTSRnor5.0
RGSC_v3.4933,359,062 - 33,359,321UniSTSRGSC3.4
Celera934,609,866 - 34,610,125UniSTS
Cytogenetic Map9q21UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-27852 BioCyc
NCBI Gene 503251 ENTREZGENE
PhenoGen Rplp1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rplp1-ps1  ribosomal protein lateral stalk subunit P1, pseudogene 1  RGD1562461  similar to 60S acidic ribosomal protein P1  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1562461  similar to 60S acidic ribosomal protein P1   RGD1562461_predicted  similar to 60S acidic ribosomal protein P1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562461_predicted  similar to 60S acidic ribosomal protein P1 (predicted)  LOC503251  similar to 60S acidic ribosomal protein P1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC503251  similar to 60S acidic ribosomal protein P1      Symbol and Name status set to provisional 70820 PROVISIONAL