Ttc6 (tetratricopeptide repeat domain 6) - Rat Genome Database

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Gene: Ttc6 (tetratricopeptide repeat domain 6) Rattus norvegicus
Analyze
Symbol: Ttc6
Name: tetratricopeptide repeat domain 6
RGD ID: 1560556
Description: Predicted to be involved in gibberellic acid mediated signaling pathway. Orthologous to human TTC6 (tetratricopeptide repeat domain 6); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 3',5'-cyclic AMP; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC366631; LOC366631; RGD1560556; similar to C14orf25 protein; tetratricopeptide repeat protein 6; uncharacterized protein LOC366631
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8680,872,055 - 81,103,170 (+)NCBIGRCr8
mRatBN7.2675,136,827 - 75,368,176 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl675,136,792 - 75,368,178 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0678,567,453 - 78,779,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl678,567,970 - 78,631,557 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0688,092,531 - 88,155,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4678,027,497 - 78,089,886 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera673,950,386 - 74,161,882 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ttc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8680,872,055 - 81,103,170 (+)NCBIGRCr8
mRatBN7.2675,136,827 - 75,368,176 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl675,136,792 - 75,368,178 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0678,567,453 - 78,779,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl678,567,970 - 78,631,557 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0688,092,531 - 88,155,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4678,027,497 - 78,089,886 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera673,950,386 - 74,161,882 (+)NCBICelera
Cytogenetic Map6q23NCBI
TTC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381437,595,629 - 37,842,717 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1437,595,629 - 38,041,442 (+)EnsemblGRCh38hg38GRCh38
GRCh371438,064,834 - 38,311,922 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361437,334,265 - 37,381,247 (+)NCBINCBI36Build 36hg18NCBI36
Build 341437,334,264 - 37,381,247NCBI
Celera1417,936,772 - 18,176,147 (+)NCBICelera
Cytogenetic Map14q21.1NCBI
HuRef1418,179,166 - 18,333,587 (+)NCBIHuRef
CHM1_11438,063,561 - 38,217,140 (+)NCBICHM1_1
T2T-CHM13v2.01431,784,758 - 32,031,773 (+)NCBIT2T-CHM13v2.0
Ttc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391257,593,490 - 57,784,697 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1257,610,899 - 57,784,714 (+)EnsemblGRCm39 Ensembl
GRCm381257,546,704 - 57,737,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1257,564,113 - 57,737,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv371258,665,102 - 58,723,092 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361258,482,127 - 58,540,121 (+)NCBIMGSCv36mm8
Celera1258,745,341 - 58,802,725 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.7NCBI
Ttc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540923,348,460 - 23,568,749 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540923,349,294 - 23,580,993 (-)NCBIChiLan1.0ChiLan1.0
TTC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21538,931,457 - 39,164,987 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11438,147,967 - 38,381,440 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01418,363,956 - 18,601,589 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11436,714,244 - 36,962,083 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1436,740,892 - 36,962,078 (+)Ensemblpanpan1.1panPan2
TTC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1816,177,345 - 16,282,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl816,108,988 - 16,282,207 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha815,908,632 - 16,081,397 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0816,228,390 - 16,401,165 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl816,217,033 - 16,400,851 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1815,990,022 - 16,095,392 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0815,987,232 - 16,159,825 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0816,344,675 - 16,450,102 (+)NCBIUU_Cfam_GSD_1.0
Ttc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864048,045,231 - 48,239,071 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649411,555,002 - 11,744,814 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl762,228,058 - 62,454,627 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1762,228,528 - 62,444,503 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2767,093,288 - 67,326,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12414,418,650 - 14,626,637 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2414,431,804 - 14,626,210 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660533,466,218 - 3,669,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624955240,060 - 486,195 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttc6
1010 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:11
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000032743
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67222764181132889Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat

Markers in Region
D6Rat85  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2675,195,932 - 75,196,177 (+)MAPPERmRatBN7.2
Rnor_6.0678,610,823 - 78,611,067NCBIRnor6.0
Rnor_5.0688,134,972 - 88,135,216UniSTSRnor5.0
RGSC_v3.4678,069,152 - 78,069,397RGDRGSC3.4
RGSC_v3.4678,069,153 - 78,069,397UniSTSRGSC3.4
RGSC_v3.1678,072,163 - 78,072,570RGD
Celera673,991,636 - 73,991,880UniSTS
FHH x ACI Map660.3RGD
FHH x ACI Map660.3UniSTS
Cytogenetic Map6q23UniSTS
RH143591  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2675,175,351 - 75,175,486 (+)MAPPERmRatBN7.2
Rnor_6.0678,590,184 - 78,590,318NCBIRnor6.0
Rnor_5.0688,114,755 - 88,114,889UniSTSRnor5.0
RGSC_v3.4678,048,757 - 78,048,891UniSTSRGSC3.4
Celera673,971,004 - 73,971,138UniSTS
RH 3.4 Map6542.7UniSTS
Cytogenetic Map6q23UniSTS
RH144533  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2675,174,878 - 75,175,004 (+)MAPPERmRatBN7.2
Rnor_6.0678,589,711 - 78,589,836NCBIRnor6.0
Rnor_5.0688,114,282 - 88,114,407UniSTSRnor5.0
RGSC_v3.4678,048,284 - 78,048,409UniSTSRGSC3.4
Celera673,970,531 - 73,970,656UniSTS
RH 3.4 Map6543.8UniSTS
Cytogenetic Map6q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 3 21 21 21 64 16 11 11
Below cutoff 7 20 18 2 18 3 3 6 16 20 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017594447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000032743   ⟹   ENSRNOP00000032088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl675,136,792 - 75,227,690 (+)Ensembl
Rnor_6.0 Ensembl678,567,970 - 78,631,557 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098973   ⟹   ENSRNOP00000081976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl675,154,486 - 75,368,178 (+)Ensembl
RefSeq Acc Id: XM_039113206   ⟹   XP_038969134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,071,451 (+)NCBI
mRatBN7.2675,154,447 - 75,336,455 (+)NCBI
RefSeq Acc Id: XM_039113207   ⟹   XP_038969135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,064,731 (+)NCBI
mRatBN7.2675,154,448 - 75,329,806 (+)NCBI
RefSeq Acc Id: XM_039113209   ⟹   XP_038969137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,071,451 (+)NCBI
mRatBN7.2675,154,447 - 75,336,455 (+)NCBI
RefSeq Acc Id: XM_039113210   ⟹   XP_038969138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,069,223 (+)NCBI
mRatBN7.2675,154,447 - 75,334,234 (+)NCBI
RefSeq Acc Id: XM_063262644   ⟹   XP_063118714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262645   ⟹   XP_063118715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,872,055 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262646   ⟹   XP_063118716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262647   ⟹   XP_063118717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262648   ⟹   XP_063118718
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262650   ⟹   XP_063118720
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262651   ⟹   XP_063118721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262652   ⟹   XP_063118722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262653   ⟹   XP_063118723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,928,932 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262654   ⟹   XP_063118724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,946,945 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262655   ⟹   XP_063118725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,946,551 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262656   ⟹   XP_063118726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,953,768 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262657   ⟹   XP_063118727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8681,033,740 - 81,103,170 (+)NCBI
RefSeq Acc Id: XM_063262658   ⟹   XP_063118728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8681,033,178 - 81,103,170 (+)NCBI
RefSeq Acc Id: XR_005505974
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,071,454 (+)NCBI
mRatBN7.2675,154,447 - 75,336,466 (+)NCBI
RefSeq Acc Id: XR_005505975
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,058,046 (+)NCBI
mRatBN7.2675,154,448 - 75,323,057 (+)NCBI
RefSeq Acc Id: XR_005505976
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8680,889,447 - 81,058,046 (+)NCBI
mRatBN7.2675,154,448 - 75,323,057 (+)NCBI
Ensembl Acc Id: ENSRNOP00000032088   ⟸   ENSRNOT00000032743
RefSeq Acc Id: XP_038969134   ⟸   XM_039113206
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038969137   ⟸   XM_039113209
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038969138   ⟸   XM_039113210
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038969135   ⟸   XM_039113207
- Peptide Label: isoform X12
Ensembl Acc Id: ENSRNOP00000081976   ⟸   ENSRNOT00000098973
RefSeq Acc Id: XP_063118715   ⟸   XM_063262645
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118714   ⟸   XM_063262644
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118720   ⟸   XM_063262650
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063118717   ⟸   XM_063262647
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118722   ⟸   XM_063262652
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063118716   ⟸   XM_063262646
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063118718   ⟸   XM_063262648
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZWF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118721   ⟸   XM_063262651
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063118723   ⟸   XM_063262653
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063118725   ⟸   XM_063262655
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063118724   ⟸   XM_063262654
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063118726   ⟸   XM_063262656
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063118728   ⟸   XM_063262658
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063118727   ⟸   XM_063262657
- Peptide Label: isoform X13

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZW64-F1-model_v2 AlphaFold D3ZW64 1-455 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560556 AgrOrtholog
BioCyc Gene G2FUF-37408 BioCyc
Ensembl Genes ENSRNOG00000022791 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032743.7 UniProtKB/TrEMBL
  ENSRNOT00000098973.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro Sel1-like UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene 366631 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 6 UniProtKB/TrEMBL
  UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED UniProtKB/TrEMBL
Pfam TPR_1 UniProtKB/TrEMBL
  TPR_11 UniProtKB/TrEMBL
  TPR_16 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PhenoGen Ttc6 PhenoGen
PROSITE TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022791 RatGTEx
SMART SEL1 UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8I5ZWF2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZW64_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-03 Ttc6  tetratricopeptide repeat domain 6  RGD1560556  similar to C14orf25 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560556  similar to C14orf25 protein   RGD1560556_predicted  similar to C14orf25 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560556_predicted  similar to C14orf25 protein (predicted)  LOC366631  similar to C14orf25 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC366631  similar to C14orf25 protein      Symbol and Name status set to provisional 70820 PROVISIONAL