Ttc6 (tetratricopeptide repeat domain 6) - Rat Genome Database
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Gene: Ttc6 (tetratricopeptide repeat domain 6) Rattus norvegicus
Analyze
Symbol: Ttc6
Name: tetratricopeptide repeat domain 6
RGD ID: 1560556
Description: Orthologous to human TTC6 (tetratricopeptide repeat domain 6); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 3',5'-cyclic AMP; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: MODEL
Also known as: hypothetical protein LOC366631; LOC366631; RGD1560556; similar to C14orf25 protein; tetratricopeptide repeat protein 6; uncharacterized protein LOC366631
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2675,136,827 - 75,368,176 (+)NCBI
Rnor_6.0 Ensembl678,567,970 - 78,631,557 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0678,567,453 - 78,779,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0688,092,531 - 88,155,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4678,027,497 - 78,089,886 (+)NCBIRGSC3.4rn4RGSC3.4
Celera673,950,386 - 74,161,882 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ttc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2675,136,827 - 75,368,176 (+)NCBI
Rnor_6.0 Ensembl678,567,970 - 78,631,557 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0678,567,453 - 78,779,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0688,092,531 - 88,155,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4678,027,497 - 78,089,886 (+)NCBIRGSC3.4rn4RGSC3.4
Celera673,950,386 - 74,161,882 (+)NCBICelera
Cytogenetic Map6q23NCBI
TTC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1437,595,847 - 38,041,442 (+)EnsemblGRCh38hg38GRCh38
GRCh381437,593,159 - 37,842,717 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371438,064,834 - 38,311,922 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371438,064,941 - 38,218,563 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361437,334,265 - 37,381,247 (+)NCBINCBI36hg18NCBI36
Build 341437,334,264 - 37,381,247NCBI
Celera1417,936,772 - 18,176,147 (+)NCBI
Cytogenetic Map14q21.1NCBI
HuRef1418,179,166 - 18,333,587 (+)NCBIHuRef
CHM1_11438,063,024 - 38,310,183 (+)NCBICHM1_1
Ttc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391257,593,490 - 57,784,697 (+)NCBIGRCm39mm39
GRCm381257,546,704 - 57,737,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1257,564,113 - 57,737,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv371258,665,102 - 58,723,092 (+)NCBIGRCm37mm9NCBIm37
MGSCv361258,482,127 - 58,540,121 (+)NCBImm8
Celera1258,745,341 - 58,802,725 (+)NCBICelera
Cytogenetic Map12C1NCBI
Ttc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540923,348,460 - 23,568,749 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540923,349,294 - 23,580,993 (-)NCBIChiLan1.0ChiLan1.0
TTC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11436,714,244 - 36,962,083 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1436,740,892 - 36,962,078 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01418,363,956 - 18,601,589 (+)NCBIMhudiblu_PPA_v0panPan3
TTC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl816,108,988 - 16,282,207 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1816,177,345 - 16,282,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ttc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649411,555,002 - 11,744,814 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl762,228,449 - 62,443,707 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1762,228,528 - 62,444,503 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2767,093,288 - 67,326,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12414,418,650 - 14,626,637 (+)NCBI
ChlSab1.1 Ensembl2414,431,804 - 14,626,210 (+)Ensembl
Ttc6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624955240,060 - 486,195 (+)NCBI

Position Markers
D6Rat85  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0678,610,823 - 78,611,067NCBIRnor6.0
Rnor_5.0688,134,972 - 88,135,216UniSTSRnor5.0
RGSC_v3.4678,069,152 - 78,069,397RGDRGSC3.4
RGSC_v3.4678,069,153 - 78,069,397UniSTSRGSC3.4
RGSC_v3.1678,072,163 - 78,072,570RGD
Celera673,991,636 - 73,991,880UniSTS
FHH x ACI Map660.3UniSTS
FHH x ACI Map660.3RGD
Cytogenetic Map6q23UniSTS
RH143591  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0678,590,184 - 78,590,318NCBIRnor6.0
Rnor_5.0688,114,755 - 88,114,889UniSTSRnor5.0
RGSC_v3.4678,048,757 - 78,048,891UniSTSRGSC3.4
Celera673,971,004 - 73,971,138UniSTS
RH 3.4 Map6542.7UniSTS
Cytogenetic Map6q23UniSTS
RH144533  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0678,589,711 - 78,589,836NCBIRnor6.0
Rnor_5.0688,114,282 - 88,114,407UniSTSRnor5.0
RGSC_v3.4678,048,284 - 78,048,409UniSTSRGSC3.4
Celera673,970,531 - 73,970,656UniSTS
RH 3.4 Map6543.8UniSTS
Cytogenetic Map6q23UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)67009971115379601Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63436743680490628Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63626028884763275Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63810630883106308Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64167904686679046Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)648432758108268790Rat
4889848Pur25Proteinuria QTL 25140.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65980306594001333Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)660606431108154445Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)660606431108154445Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)662263348107263348Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)666129520111129520Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)668781170147991367Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)668781170147991367Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)671206251116206251Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)675449871120449871Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)675623277120276465Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)675623277120623277Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)675623277136143011Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)675623277136426962Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67562339384763275Rat
1581550Pur8Proteinuria QTL 8total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)675623393136142742Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)675623393136142742Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)676902247114203334Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:11
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000032743
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 3 21 21 21 64 16 11 11
Below cutoff 7 20 18 2 18 3 3 6 16 20 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017594448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000032743   ⟹   ENSRNOP00000032088
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl678,567,970 - 78,631,557 (+)Ensembl
RefSeq Acc Id: XM_017594447   ⟹   XP_017449936
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0678,567,453 - 78,779,151 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594448   ⟹   XP_017449937
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,450 - 75,368,176 (+)NCBI
Rnor_6.0678,567,455 - 78,779,151 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603225   ⟹   XP_017458714
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera673,950,386 - 74,161,882 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603226   ⟹   XP_017458715
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera673,950,388 - 74,161,882 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039113195   ⟹   XP_038969123
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,448 - 75,368,176 (+)NCBI
RefSeq Acc Id: XM_039113196   ⟹   XP_038969124
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,136,827 - 75,368,176 (+)NCBI
RefSeq Acc Id: XM_039113197   ⟹   XP_038969125
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,448 - 75,368,176 (+)NCBI
RefSeq Acc Id: XM_039113198   ⟹   XP_038969126
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,447 - 75,368,176 (+)NCBI
RefSeq Acc Id: XM_039113200   ⟹   XP_038969128
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,448 - 75,368,176 (+)NCBI
RefSeq Acc Id: XM_039113201   ⟹   XP_038969129
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,448 - 75,368,176 (+)NCBI
RefSeq Acc Id: XM_039113202   ⟹   XP_038969130
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,194,049 - 75,368,176 (+)NCBI
RefSeq Acc Id: XM_039113203   ⟹   XP_038969131
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,211,935 - 75,368,176 (+)NCBI
RefSeq Acc Id: XM_039113204   ⟹   XP_038969132
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,211,555 - 75,368,176 (+)NCBI
RefSeq Acc Id: XM_039113205   ⟹   XP_038969133
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,218,767 - 75,368,176 (+)NCBI
RefSeq Acc Id: XM_039113206   ⟹   XP_038969134
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,447 - 75,336,455 (+)NCBI
RefSeq Acc Id: XM_039113207   ⟹   XP_038969135
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,448 - 75,329,806 (+)NCBI
RefSeq Acc Id: XM_039113209   ⟹   XP_038969137
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,447 - 75,336,455 (+)NCBI
RefSeq Acc Id: XM_039113210   ⟹   XP_038969138
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,447 - 75,334,234 (+)NCBI
RefSeq Acc Id: XM_039113211   ⟹   XP_038969139
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,298,188 - 75,368,176 (+)NCBI
RefSeq Acc Id: XR_005505974
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,447 - 75,336,466 (+)NCBI
RefSeq Acc Id: XR_005505975
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,448 - 75,323,057 (+)NCBI
RefSeq Acc Id: XR_005505976
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2675,154,448 - 75,323,057 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_017458714   ⟸   XM_017603225
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017458715   ⟸   XM_017603226
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017449936   ⟸   XM_017594447
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449937   ⟸   XM_017594448
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000032088   ⟸   ENSRNOT00000032743
RefSeq Acc Id: XP_038969124   ⟸   XM_039113196
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038969126   ⟸   XM_039113198
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038969134   ⟸   XM_039113206
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038969137   ⟸   XM_039113209
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038969138   ⟸   XM_039113210
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038969123   ⟸   XM_039113195
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038969128   ⟸   XM_039113200
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038969129   ⟸   XM_039113201
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038969125   ⟸   XM_039113197
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038969135   ⟸   XM_039113207
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038969130   ⟸   XM_039113202
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038969132   ⟸   XM_039113204
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038969131   ⟸   XM_039113203
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038969133   ⟸   XM_039113205
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038969139   ⟸   XM_039113211
- Peptide Label: isoform X12

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560556 AgrOrtholog
Ensembl Genes ENSRNOG00000022791 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000032088 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032743 UniProtKB/TrEMBL
NCBI Gene 366631 ENTREZGENE
PhenoGen Ttc6 PhenoGen
UniProt D3ZW64_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-03 Ttc6  tetratricopeptide repeat domain 6  RGD1560556  similar to C14orf25 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560556  similar to C14orf25 protein   RGD1560556_predicted  similar to C14orf25 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560556_predicted  similar to C14orf25 protein (predicted)  LOC366631  similar to C14orf25 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC366631  similar to C14orf25 protein      Symbol and Name status set to provisional 70820 PROVISIONAL