TTC6 (tetratricopeptide repeat domain 6) - Rat Genome Database

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Gene: TTC6 (tetratricopeptide repeat domain 6) Chlorocebus sabaeus
Analyze
Symbol: TTC6
Name: tetratricopeptide repeat domain 6
RGD ID: 18357705
Description: INVOLVED IN receptor-mediated virion attachment to host cell (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Meckel syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12414,418,650 - 14,626,637 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2414,431,804 - 14,626,210 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660533,466,218 - 3,669,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TTC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12414,418,650 - 14,626,637 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2414,431,804 - 14,626,210 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660533,466,218 - 3,669,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TTC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381437,595,629 - 37,842,717 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1437,595,629 - 38,041,442 (+)EnsemblGRCh38hg38GRCh38
GRCh371438,064,834 - 38,311,922 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361437,334,265 - 37,381,247 (+)NCBINCBI36Build 36hg18NCBI36
Build 341437,334,264 - 37,381,247NCBI
Celera1417,936,772 - 18,176,147 (+)NCBICelera
Cytogenetic Map14q21.1NCBI
HuRef1418,179,166 - 18,333,587 (+)NCBIHuRef
CHM1_11438,063,561 - 38,217,140 (+)NCBICHM1_1
T2T-CHM13v2.01431,784,758 - 32,031,773 (+)NCBIT2T-CHM13v2.0
Ttc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391257,593,490 - 57,784,697 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1257,610,899 - 57,784,714 (+)EnsemblGRCm39 Ensembl
GRCm381257,546,704 - 57,737,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1257,564,113 - 57,737,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv371258,665,102 - 58,723,092 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361258,482,127 - 58,540,121 (+)NCBIMGSCv36mm8
Celera1258,745,341 - 58,802,725 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.7NCBI
Ttc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8680,872,055 - 81,103,170 (+)NCBIGRCr8
mRatBN7.2675,136,827 - 75,368,176 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl675,136,792 - 75,368,178 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0678,567,453 - 78,779,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl678,567,970 - 78,631,557 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0688,092,531 - 88,155,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4678,027,497 - 78,089,886 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera673,950,386 - 74,161,882 (+)NCBICelera
Cytogenetic Map6q23NCBI
Ttc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540923,348,460 - 23,568,749 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540923,349,294 - 23,580,993 (-)NCBIChiLan1.0ChiLan1.0
TTC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21538,931,457 - 39,164,987 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11438,147,967 - 38,381,440 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01418,363,956 - 18,601,589 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11436,714,244 - 36,962,083 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1436,740,892 - 36,962,078 (+)Ensemblpanpan1.1panPan2
TTC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1816,177,345 - 16,282,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl816,108,988 - 16,282,207 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha815,908,632 - 16,081,397 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0816,228,390 - 16,401,165 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl816,217,033 - 16,400,851 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1815,990,022 - 16,095,392 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0815,987,232 - 16,159,825 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0816,344,675 - 16,450,102 (+)NCBIUU_Cfam_GSD_1.0
Ttc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864048,045,231 - 48,239,071 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649411,555,002 - 11,744,814 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl762,228,058 - 62,454,627 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1762,228,528 - 62,444,503 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2767,093,288 - 67,326,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ttc6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624955240,060 - 486,195 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system nervous system
High
Medium
Low 10 34
Below cutoff 7 6

Sequence


RefSeq Acc Id: ENSCSAT00000013515   ⟹   ENSCSAP00000011512
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2414,431,804 - 14,626,210 (+)Ensembl
RefSeq Acc Id: XM_007986533   ⟹   XP_007984724
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12414,431,312 - 14,626,637 (+)NCBI
Vero_WHO_p1.0NW_0236660533,466,218 - 3,669,885 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007984724 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011512.1
RefSeq Acc Id: XP_007984724   ⟸   XM_007986533
- UniProtKB: A0A0D9RSC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000011512   ⟸   ENSCSAT00000013515


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015431 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013515.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
  TPR_2 UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene TTC6 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 6 UniProtKB/TrEMBL
  UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED UniProtKB/TrEMBL
Pfam TPR_1 UniProtKB/TrEMBL
  TPR_2 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0D9RSC3 ENTREZGENE, UniProtKB/TrEMBL