| 1000 | 1641904 | Alcrsp4 | Alcohol response QTL 4 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 6 | 67262953 | 112262953 | Rat | n/a | region | qtl |
| 1000 | 634307 | Bp141 | Blood pressure QTL 141 | 4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 6 | 35230417 | 80230417 | Rat | n/a | region | qtl |
| 1000 | 1331799 | Bp211 | Blood pressure QTL 211 | 3.66407 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 72202632 | 130919985 | Rat | n/a | region | qtl |
| 1000 | 2301964 | Bp323 | Blood pressure QTL 323 | 4.3 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 6 | 72227641 | 81132889 | Rat | n/a | region | qtl |
| 1000 | 70196 | BpQTLcluster7 | Blood pressure QTL cluster 7 | 6.82 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 6 | 72202632 | 117202632 | Rat | n/a | region | qtl |
| 1000 | 1558641 | Cm47 | Cardiac mass QTL 47 | 2.9 | 0.001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 6 | 57730540 | 104085867 | Rat | n/a | region | qtl |
| 1000 | 6893332 | Cm74 | Cardiac mass QTL 74 | 0.4 | 0.64 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 6 | 57730540 | 104085867 | Rat | n/a | region | qtl |
| 1000 | 6893340 | Cm77 | Cardiac mass QTL 77 | 0.26 | 0.57 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 6 | 33309549 | 81132889 | Rat | n/a | region | qtl |
| 1000 | 1576309 | Emca7 | Estrogen-induced mammary cancer QTL 7 | 4 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 6 | 15107216 | 107351382 | Rat | n/a | region | qtl |
| 1000 | 1300075 | Glom7 | Glomerulus QTL 7 | 5.6 | 0.0000002 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) | 6 | 71201409 | 116201409 | Rat | n/a | region | qtl |
| 1000 | 2293839 | Kiddil2 | Kidney dilation QTL 2 | 4.8 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 6 | 20866422 | 81133036 | Rat | n/a | region | qtl |
| 1000 | 2293841 | Kiddil4 | Kidney dilation QTL 4 | 4.4 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 6 | 20866422 | 81133036 | Rat | n/a | region | qtl |
| 1000 | 4145119 | Mcs25 | Mammary carcinoma susceptibility QTL 25 | | 0.0001 | mammary gland integrity trait (VT:0010552) | ratio of deaths to total study population during a period of time (CMO:0001023) | 6 | 10894415 | 110548006 | Rat | n/a | region | qtl |
| 1000 | 70176 | Mcsm1 | Mammary carcinoma susceptibility modifier QTL 1 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 6 | 58632962 | 103632962 | Rat | n/a | region | qtl |
| 1000 | 634330 | Pia16 | Pristane induced arthritis QTL 16 | 3.9 | | joint integrity trait (VT:0010548) | arthritic paw count (CMO:0001460) | 6 | 45790088 | 104200226 | Rat | n/a | region | qtl |
| 1000 | 4889848 | Pur25 | Proteinuria QTL 25 | 14 | 0.003 | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 6 | 56728562 | 90198260 | Rat | n/a | region | qtl |
| 1000 | 1581550 | Pur8 | Proteinuria QTL 8 | | | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 6 | 72227641 | 130729205 | Rat | n/a | region | qtl |
| 1000 | 1300143 | Rf14 | Renal function QTL 14 | 2.92 | | renal blood flow trait (VT:2000006) | absolute change in renal blood flow rate (CMO:0001168) | 6 | 34434137 | 77102317 | Rat | n/a | region | qtl |
| 1000 | 1331789 | Rf37 | Renal function QTL 37 | 3.224 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 6 | 72202632 | 115200186 | Rat | n/a | region | qtl |
| 1000 | 12801471 | Schws9 | Schwannoma susceptibility QTL 9 | | | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 6 | 61747639 | 106747639 | Rat | n/a | region | qtl |
| 1000 | 9590306 | Scort18 | Serum corticosterone level QTL 18 | 2.88 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 38783989 | 83783989 | Rat | n/a | region | qtl |
| 1000 | 9590140 | Scort4 | Serum corticosterone level QTL 4 | 14.49 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 38783989 | 83783989 | Rat | n/a | region | qtl |
| 1000 | 724524 | Uae2 | Urinary albumin excretion QTL 2 | 2.7 | 0.0005 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 73463459 | 109394713 | Rat | n/a | region | qtl |
| 1000 | 731173 | Uae22 | Urinary albumin excretion QTL 22 | 10.1 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 65531555 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 1581563 | Uae33 | Urinary albumin excretion QTL 33 | | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 72227641 | 130729205 | Rat | n/a | region | qtl |
| 1000 | 2290393 | Uae37 | Urinary albumin excretion QTL 37 | | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 65531555 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 724536 | Uae7 | Urinary albumin excretion QTL 7 | 3.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 6 | 72202632 | 130729475 | Rat | n/a | region | qtl |
| 1000 | 9590290 | Uminl2 | Urine mineral level QTL 2 | 3.96 | 0.001 | urine mineral amount (VT:0015086) | urine electrolyte level (CMO:0000593) | 6 | 38783989 | 83783989 | Rat | n/a | region | qtl |