Ttc6 (tetratricopeptide repeat domain 6) - Rat Genome Database

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Gene: Ttc6 (tetratricopeptide repeat domain 6) Chinchilla lanigera
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Symbol: Ttc6
Name: tetratricopeptide repeat domain 6
RGD ID: 8708675
Description: ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Meckel syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540923,348,460 - 23,568,749 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540923,349,294 - 23,580,993 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ttc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540923,348,460 - 23,568,749 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540923,349,294 - 23,580,993 (-)NCBIChiLan1.0ChiLan1.0
TTC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381437,595,629 - 37,842,717 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1437,595,629 - 38,041,442 (+)EnsemblGRCh38hg38GRCh38
GRCh371438,064,834 - 38,311,922 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361437,334,265 - 37,381,247 (+)NCBINCBI36Build 36hg18NCBI36
Build 341437,334,264 - 37,381,247NCBI
Celera1417,936,772 - 18,176,147 (+)NCBICelera
Cytogenetic Map14q21.1NCBI
HuRef1418,179,166 - 18,333,587 (+)NCBIHuRef
CHM1_11438,063,561 - 38,217,140 (+)NCBICHM1_1
T2T-CHM13v2.01431,784,758 - 32,031,773 (+)NCBIT2T-CHM13v2.0
Ttc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391257,593,490 - 57,784,697 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1257,610,899 - 57,784,714 (+)EnsemblGRCm39 Ensembl
GRCm381257,546,704 - 57,737,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1257,564,113 - 57,737,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv371258,665,102 - 58,723,092 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361258,482,127 - 58,540,121 (+)NCBIMGSCv36mm8
Celera1258,745,341 - 58,802,725 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.7NCBI
Ttc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8680,872,055 - 81,103,170 (+)NCBIGRCr8
mRatBN7.2675,136,827 - 75,368,176 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl675,136,792 - 75,368,178 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0678,567,453 - 78,779,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl678,567,970 - 78,631,557 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0688,092,531 - 88,155,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4678,027,497 - 78,089,886 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera673,950,386 - 74,161,882 (+)NCBICelera
Cytogenetic Map6q23NCBI
TTC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21538,931,457 - 39,164,987 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11438,147,967 - 38,381,440 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01418,363,956 - 18,601,589 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11436,714,244 - 36,962,083 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1436,740,892 - 36,962,078 (+)Ensemblpanpan1.1panPan2
TTC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1816,177,345 - 16,282,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl816,108,988 - 16,282,207 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha815,908,632 - 16,081,397 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0816,228,390 - 16,401,165 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl816,217,033 - 16,400,851 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1815,990,022 - 16,095,392 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0815,987,232 - 16,159,825 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0816,344,675 - 16,450,102 (+)NCBIUU_Cfam_GSD_1.0
Ttc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864048,045,231 - 48,239,071 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649411,555,002 - 11,744,814 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl762,228,058 - 62,454,627 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1762,228,528 - 62,444,503 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2767,093,288 - 67,326,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12414,418,650 - 14,626,637 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2414,431,804 - 14,626,210 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660533,466,218 - 3,669,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624955240,060 - 486,195 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000015708   ⟹   ENSCLAP00000015546
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540923,348,460 - 23,568,749 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000015709   ⟹   ENSCLAP00000015547
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540923,348,460 - 23,568,749 (-)Ensembl
RefSeq Acc Id: XM_013510165   ⟹   XP_013365619
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540923,349,294 - 23,580,993 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365619 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015546
  ENSCLAP00000015546.1
  ENSCLAP00000015547.1
RefSeq Acc Id: XP_013365619   ⟸   XM_013510165
- Sequence:
RefSeq Acc Id: ENSCLAP00000015546   ⟸   ENSCLAT00000015708
RefSeq Acc Id: ENSCLAP00000015547   ⟸   ENSCLAT00000015709


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010689 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015708 ENTREZGENE
  ENSCLAT00000015708.1 UniProtKB/TrEMBL
  ENSCLAT00000015709.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
  TPR_2 UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene LOC102020218 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 6 UniProtKB/TrEMBL
  UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED UniProtKB/TrEMBL
Pfam TPR_1 UniProtKB/TrEMBL
  TPR_11 UniProtKB/TrEMBL
  TPR_16 UniProtKB/TrEMBL
  TPR_2 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8C2VL38_CHILA UniProtKB/TrEMBL
  A0A8C2VNV7_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Ttc6  tetratricopeptide repeat domain 6  LOC102020218  uncharacterized LOC102020218  Symbol and/or name change 5135510 APPROVED