Cx3cr1 (chemokine (C-X3-C motif) receptor 1) - Rat Genome Database
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Gene: Cx3cr1 (chemokine (C-X3-C motif) receptor 1) Mus musculus
Analyze
Symbol: Cx3cr1
Name: chemokine (C-X3-C motif) receptor 1
RGD ID: 1552004
MGI Page MGI
Description: Exhibits C-X3-C chemokine binding activity; G protein-coupled receptor activity; and cytokine receptor activity. Involved in several processes, including leukocyte migration; microglial cell activation involved in immune response; and nervous system development. Localizes to cell surface. Is expressed in several structures, including colon; genitourinary system; and liver. Used to study age related macular degeneration 12. Human ortholog(s) of this gene implicated in several diseases, including human immunodeficiency virus infectious disease; obesity; pulmonary hypertension; retinal disease (multiple); and systemic scleroderma. Orthologous to human CX3CR1 (C-X3-C motif chemokine receptor 1); INTERACTS WITH 1,2-dichloroethane; 2,3,7,8-tetrachlorodibenzodioxine; 2-butoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C-X3-C chemokine receptor 1; C-X3-C CKR-1; chemokine (C-X3-C) receptor 1; CX3C chemokine receptor 1; fractalkine receptor
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,877,749 - 119,897,362 (-)NCBIGRCm39mm39
GRCm389120,048,683 - 120,068,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,901,616 - 120,069,879 (-)EnsemblGRCm38mm10GRCm38
MGSCv379119,957,811 - 119,977,400 (-)NCBIGRCm37mm9NCBIm37
MGSCv369119,897,391 - 119,916,980 (-)NCBImm8
Celera9120,518,248 - 120,537,939 (-)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
age related macular degeneration 12  (IEA,ISO)
anti-basement membrane glomerulonephritis  (ISO)
arteriosclerosis  (IMP)
arthus reaction  (IMP)
asthma  (IMP,ISO)
atherosclerosis  (IMP)
atopic dermatitis  (IMP,ISO)
borna disease  (ISO)
Chloracne  (ISO)
Chronic Mesangial Proliferative Glomerulonephritis  (ISO)
congestive heart failure  (ISO)
conjunctivitis  (IMP)
corneal neovascularization  (IMP)
coronary artery disease  (ISS)
Coronary Disease  (ISO)
cystitis  (ISO)
diabetes mellitus  (IMP)
Experimental Arthritis  (ISO)
Experimental Autoimmune Encephalomyelitis  (ISO)
Experimental Autoimmune Neuritis  (ISO)
Experimental Autoimmune Uveitis  (IMP,ISO)
Experimental Diabetes Mellitus  (ISO)
glaucoma  (IMP)
glomerulonephritis  (ISO)
Graft vs Host Disease  (ISO)
Hearing Loss  (IEP)
hepatopulmonary syndrome  (ISO)
Herpes Simplex Encephalitis  (IMP)
human immunodeficiency virus infectious disease  (ISO)
Hyperalgesia  (IMP,ISO)
Inflammation  (IMP,ISO)
Intervertebral Disc Displacement  (ISO)
Intimal Hyperplasia  (IMP)
macular degeneration  (IGI,ISO)
Memory Disorders  (ISO)
Microscopic Polyangiitis  (ISO)
Myocardial Reperfusion Injury  (ISO)
Neoplasm Metastasis  (ISO)
nephrosis  (ISO)
obesity  (ISO)
optic nerve glioma  (IMP)
otitis media  (ISO)
Pain  (ISO)
Parkinsonian Disorders  (ISO)
portal hypertension  (ISO)
prion disease  (ISO)
psoriasis  (ISO)
pulmonary embolism  (ISO)
pulmonary hypertension  (ISO)
respiratory syncytial virus infectious disease  (IEP,IMP)
retinal degeneration  (IMP,ISO)
retinal vasculitis  (ISO)
retinitis  (IMP)
sciatic neuropathy  (IMP,ISO)
Sepsis  (ISO)
status epilepticus  (ISO)
systemic lupus erythematosus  (ISO)
systemic scleroderma  (IMP,ISO)
transient cerebral ischemia  (ISO)
uveitis  (ISO)
Viral Bronchiolitis  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
autocrine signaling  (ISO)
calcium-mediated signaling  (IBA)
cell adhesion  (IPI)
cell chemotaxis  (IBA,ISO)
cellular response to lipopolysaccharide  (IGI)
cellular response to transforming growth factor beta stimulus  (ISO)
central nervous system maturation  (IMP)
cerebral cortex cell migration  (IMP)
chemokine-mediated signaling pathway  (ISO)
chemotaxis  (ISO)
cytokine-mediated signaling pathway  (IMP)
G protein-coupled receptor signaling pathway  (IEA)
immune response  (IBA)
innate immune response  (IC)
leukocyte tethering or rolling  (IGI)
macrophage chemotaxis  (IMP)
memory  (ISO)
microglial cell activation  (ISO)
microglial cell activation involved in immune response  (IMP)
modulation of chemical synaptic transmission  (IMP)
multiple spine synapse organization, single dendrite  (IMP)
negative regulation of angiogenesis  (IMP)
negative regulation of apoptotic signaling pathway  (ISO)
negative regulation of cell migration  (ISO)
negative regulation of chronic inflammatory response to non-antigenic stimulus  (ISO)
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand  (IMP)
negative regulation of hippocampal neuron apoptotic process  (ISO)
negative regulation of interleukin-1 beta production  (ISO)
negative regulation of long-term synaptic potentiation  (ISO)
phospholipase C-activating G protein-coupled receptor signaling pathway  (IMP)
positive regulation of angiogenesis  (ISO)
positive regulation of cytosolic calcium ion concentration  (IBA)
positive regulation of I-kappaB phosphorylation  (ISO)
positive regulation of microglial cell migration  (ISO)
positive regulation of neuroblast proliferation  (ISO)
positive regulation of neurogenesis  (IMP)
positive regulation of NF-kappaB transcription factor activity  (ISO)
positive regulation of protein kinase B signaling  (ISO)
regulation of nitric oxide biosynthetic process  (IGI)
regulation of tumor necrosis factor production  (IGI)
response to ischemia  (ISO)
signal transduction  (IEA)
social behavior  (IMP)
synapse maturation  (IMP)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal amacrine cell morphology  (IAGP)
abnormal Bruch membrane morphology  (IAGP)
abnormal dendritic cell physiology  (IAGP)
abnormal leukocyte physiology  (IAGP)
abnormal macrophage physiology  (IAGP)
abnormal microglial cell morphology  (IAGP)
abnormal microglial cell physiology  (IAGP)
abnormal Muller cell morphology  (IAGP)
abnormal NK cell physiology  (IAGP)
abnormal ocular fundus morphology  (IAGP)
abnormal photoreceptor connecting cilium morphology  (IAGP)
abnormal photoreceptor inner segment morphology  (IAGP)
abnormal response to infection  (IAGP)
abnormal response to transplant  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retinal outer nuclear layer morphology  (IAGP)
abnormal retinal photoreceptor layer morphology  (IAGP)
abnormal retinal photoreceptor morphology  (IAGP)
abnormal retinal pigment epithelium morphology  (IAGP)
abnormal retinal pigmentation  (IAGP)
abnormal small intestinal villus morphology  (IAGP)
abnormal splenocyte physiology  (IAGP)
abnormal vascular smooth muscle physiology  (IAGP)
abnormal vascular wound healing  (IAGP)
brain inflammation  (IAGP)
brainstem hemorrhage  (IAGP)
choroidal neovascularization  (IAGP)
decreased a-wave amplitude  (IAGP)
decreased b-wave amplitude  (IAGP)
decreased cerebral infarction size  (IAGP)
decreased grip strength  (IAGP)
decreased inflammatory response  (IAGP)
decreased interleukin-1 beta secretion  (IAGP)
decreased interleukin-6 secretion  (IAGP)
decreased litter size  (IAGP)
decreased monocyte cell number  (IAGP)
decreased neuron apoptosis  (IAGP)
decreased neuron number  (IAGP)
decreased NK cell number  (IAGP)
decreased retinal cone cell number  (IAGP)
decreased sensitivity to induced morbidity/mortality  (IAGP)
decreased susceptibility to atherosclerosis  (IAGP)
decreased susceptibility to bacterial infection  (IAGP)
decreased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
decreased susceptibility to kidney reperfusion injury  (IAGP)
decreased tumor necrosis factor secretion  (IAGP)
demyelination  (IAGP)
disorganized photoreceptor outer segment  (IAGP)
impaired macrophage chemotaxis  (IAGP)
increased dendritic cell number  (IAGP)
increased interleukin-10 secretion  (IAGP)
increased interleukin-4 secretion  (IAGP)
increased macrophage cell number  (IAGP)
increased microglial cell activation  (IAGP)
increased neuron apoptosis  (IAGP)
increased sensitivity to induced morbidity/mortality  (IAGP)
increased susceptibility to bacterial infection induced morbidity/mortality  (IAGP)
increased susceptibility to dopaminergic neuron neurotoxicity  (IAGP)
increased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
increased susceptibility to weight loss  (IAGP)
increased transforming growth factor beta level  (IAGP)
microgliosis  (IAGP)
neuron degeneration  (IAGP)
paralysis  (IAGP)
paresis  (IAGP)
premature death  (IAGP)
retinal cone cell degeneration  (IAGP)
retinal degeneration  (IAGP)
retinal deposits  (IAGP)
retinal gliosis  (IAGP)
retinal outer nuclear layer degeneration  (IAGP)
retinal photoreceptor degeneration  (IAGP)
retinal pigment epithelium atrophy  (IAGP)
retinal pigment epithelium hyperplasia  (IAGP)
short photoreceptor outer segment  (IAGP)
thin retinal outer nuclear layer  (IAGP)
variable depigmentation  (IAGP)
References

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Additional References at PubMed
PMID:8889548   PMID:9918795   PMID:10187784   PMID:10349636   PMID:10805752   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544273   PMID:12477932   PMID:12569158   PMID:12743318  
PMID:12871640   PMID:12881312   PMID:14765120   PMID:15170355   PMID:15347678   PMID:15489334   PMID:15514019   PMID:15534368   PMID:15653504   PMID:15857890   PMID:15895084   PMID:16020514  
PMID:16141072   PMID:16141073   PMID:16456006   PMID:16602821   PMID:16675847   PMID:16713979   PMID:16732273   PMID:16751386   PMID:16760907   PMID:16809547   PMID:16877340   PMID:16951167  
PMID:16982417   PMID:17015712   PMID:17115040   PMID:17190836   PMID:17200718   PMID:17357150   PMID:17372897   PMID:17389486   PMID:17485518   PMID:17551020   PMID:17625065   PMID:17855567  
PMID:17909628   PMID:17963723   PMID:18003857   PMID:18025128   PMID:18079406   PMID:18085589   PMID:18097059   PMID:18178810   PMID:18250467   PMID:18256671   PMID:18268033   PMID:18287559  
PMID:18308304   PMID:18311142   PMID:18322240   PMID:18347198   PMID:18347211   PMID:18375791   PMID:18385080   PMID:18410508   PMID:18421225   PMID:18490516   PMID:18490761   PMID:18519846  
PMID:18540963   PMID:18575457   PMID:18577714   PMID:18682600   PMID:18696346   PMID:18713872   PMID:18768693   PMID:18768874   PMID:18768878   PMID:18772344   PMID:18799722   PMID:18843253  
PMID:18971423   PMID:19001090   PMID:19005069   PMID:19006696   PMID:19109498   PMID:19176215   PMID:19204730   PMID:19243075   PMID:19250281   PMID:19259262   PMID:19273628   PMID:19286519  
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PMID:21262836   PMID:21267068   PMID:21278339   PMID:21282381   PMID:21308776   PMID:21310816   PMID:21327020   PMID:21333554   PMID:21341263   PMID:21364193   PMID:21425158   PMID:21451526  
PMID:21498668   PMID:21514452   PMID:21527754   PMID:21570740   PMID:21630253   PMID:21706006   PMID:21734283   PMID:21771791   PMID:21778362   PMID:21786422   PMID:21825019   PMID:21839061  
PMID:21854772   PMID:21871566   PMID:21873635   PMID:21930959   PMID:21951685   PMID:21984701   PMID:22025514   PMID:22045567   PMID:22072675   PMID:22072684   PMID:22073221   PMID:22078798  
PMID:22079990   PMID:22084310   PMID:22144035   PMID:22219332   PMID:22231304   PMID:22241983   PMID:22252034   PMID:22279523   PMID:22297487   PMID:22327225   PMID:22330646   PMID:22362506  
PMID:22383701   PMID:22388960   PMID:22403066   PMID:22422267   PMID:22442384   PMID:22451716   PMID:22457705   PMID:22508930   PMID:22511296   PMID:22547585   PMID:22564617   PMID:22565823  
PMID:22573666   PMID:22590615   PMID:22632727   PMID:22711877   PMID:22729248   PMID:22815945   PMID:22819137   PMID:22837532   PMID:22854708   PMID:22863620   PMID:22879415   PMID:22915101  
PMID:22916279   PMID:22936024   PMID:22952674   PMID:22952717   PMID:22952827   PMID:23001583   PMID:23026294   PMID:23029475   PMID:23074204   PMID:23100431   PMID:23117657   PMID:23160193  
PMID:23187627   PMID:23219392   PMID:23232206   PMID:23242472   PMID:23246312   PMID:23264747   PMID:23273845   PMID:23283724   PMID:23297132   PMID:23334413   PMID:23334579   PMID:23395676  
PMID:23407548   PMID:23409245   PMID:23437346   PMID:23440897   PMID:23467362   PMID:23477737   PMID:23493569   PMID:23499256   PMID:23519784   PMID:23525041   PMID:23543756   PMID:23569273  
PMID:23572582   PMID:23577177   PMID:23582326   PMID:23582329   PMID:23604552   PMID:23637125   PMID:23637822   PMID:23653073   PMID:23664832   PMID:23664962   PMID:23677863   PMID:23706669  
PMID:23708291   PMID:23708969   PMID:23737750   PMID:23742075   PMID:23757732   PMID:23770640   PMID:23775714   PMID:23812096   PMID:23817416   PMID:23828736   PMID:23843525   PMID:23844223  
PMID:23880139   PMID:23893820   PMID:23913046   PMID:23931756   PMID:23946404   PMID:23956422   PMID:23977372   PMID:23999431   PMID:24012416   PMID:24019537   PMID:24077561   PMID:24078688  
PMID:24081949   PMID:24084767   PMID:24129164   PMID:24166715   PMID:24166765   PMID:24177428   PMID:24184559   PMID:24185682   PMID:24210819   PMID:24220244   PMID:24249112   PMID:24270812  
PMID:24288007   PMID:24360280   PMID:24367259   PMID:24369381   PMID:24429286   PMID:24439267   PMID:24458147   PMID:24458151   PMID:24487234   PMID:24490760   PMID:24516120   PMID:24531553  
PMID:24550298   PMID:24558351   PMID:24569378   PMID:24598589   PMID:24613975   PMID:24623768   PMID:24628787   PMID:24629341   PMID:24639355   PMID:24641683   PMID:24648397   PMID:24655482  
PMID:24695541   PMID:24695852   PMID:24700421   PMID:24706832   PMID:24709779   PMID:24711412   PMID:24743146   PMID:24764683   PMID:24780906   PMID:24788416   PMID:24792913   PMID:24912173  
PMID:24920619   PMID:24933434   PMID:24954893   PMID:24980046   PMID:24983319   PMID:25002752   PMID:25019481   PMID:25024136   PMID:25030063   PMID:25036630   PMID:25080578   PMID:25082884  
PMID:25100586   PMID:25100587   PMID:25114223   PMID:25142016   PMID:25144366   PMID:25151491   PMID:25191897   PMID:25209291   PMID:25245760   PMID:25261595   PMID:25266072   PMID:25272047  
PMID:25326491   PMID:25329075   PMID:25339759   PMID:25342612   PMID:25373902   PMID:25373903   PMID:25378632   PMID:25385836   PMID:25411428   PMID:25416814   PMID:25425146   PMID:25446897  
PMID:25456160   PMID:25461258   PMID:25461978   PMID:25469644   PMID:25516753   PMID:25535040   PMID:25547797   PMID:25595779   PMID:25604058   PMID:25645754   PMID:25653382   PMID:25655317  
PMID:25661185   PMID:25661672   PMID:25673846   PMID:25675510   PMID:25706747   PMID:25722429   PMID:25728668   PMID:25741237   PMID:25753426   PMID:25755083   PMID:25761673   PMID:25765938  
PMID:25768734   PMID:25779633   PMID:25794704   PMID:25799372   PMID:25800956   PMID:25849774   PMID:25873863   PMID:25896511   PMID:25902482   PMID:25917763   PMID:25921539   PMID:25948251  
PMID:25954156   PMID:25966946   PMID:25987130   PMID:25992862   PMID:26011640   PMID:26024097   PMID:26035381   PMID:26037805   PMID:26038823   PMID:26049921   PMID:26054720   PMID:26089772  
PMID:26091486   PMID:26093274   PMID:26124111   PMID:26138432   PMID:26138922   PMID:26139610   PMID:26153425   PMID:26160897   PMID:26163371   PMID:26167653   PMID:26173779   PMID:26178698  
PMID:26193821   PMID:26223192   PMID:26231115   PMID:26253086   PMID:26254180   PMID:26254342   PMID:26257171   PMID:26279572   PMID:26286848   PMID:26287683   PMID:26292977   PMID:26303459  
PMID:26311768   PMID:26321127   PMID:26324346   PMID:26329692   PMID:26353940   PMID:26365184   PMID:26365310   PMID:26393344   PMID:26403659   PMID:26404698   PMID:26443824   PMID:26449606  
PMID:26458944   PMID:26469270   PMID:26476672   PMID:26514658   PMID:26524661   PMID:26526992   PMID:26558776   PMID:26573801   PMID:26574796   PMID:26632270   PMID:26635390   PMID:26642357  
PMID:26647393   PMID:26673138   PMID:26705686   PMID:26755608   PMID:26765996   PMID:26777404   PMID:26791526   PMID:26802470   PMID:26807334   PMID:26856416   PMID:26883520   PMID:26903243  
PMID:26923837   PMID:26935332   PMID:26937019   PMID:26976687   PMID:26997267   PMID:26999610   PMID:27009605   PMID:27033597   PMID:27036736   PMID:27062926   PMID:27067238   PMID:27135602  
PMID:27137488   PMID:27139491   PMID:27139776   PMID:27158906   PMID:27161765   PMID:27166946   PMID:27228556   PMID:27288150   PMID:27294511   PMID:27314452   PMID:27325505   PMID:27332874  
PMID:27338705   PMID:27342766   PMID:27344677   PMID:27349690   PMID:27373153   PMID:27378696   PMID:27412700   PMID:27417459   PMID:27428900   PMID:27438413   PMID:27444755   PMID:27458802  
PMID:27471450   PMID:27477524   PMID:27482114   PMID:27492475   PMID:27493188   PMID:27511730   PMID:27515581   PMID:27526712   PMID:27551152   PMID:27574188   PMID:27576369   PMID:27600773  
PMID:27605608   PMID:27639555   PMID:27658617   PMID:27687148   PMID:27697834   PMID:27707514   PMID:27717807   PMID:27776109   PMID:27814376   PMID:27829467   PMID:27834402   PMID:27858314  
PMID:27881779   PMID:27890560   PMID:27893460   PMID:27902351   PMID:27907215   PMID:27936099   PMID:27939671   PMID:27942903   PMID:27974221   PMID:28007893   PMID:28011675   PMID:28052249  
PMID:28061814   PMID:28092668   PMID:28101527   PMID:28111081   PMID:28123022   PMID:28125278   PMID:28134928   PMID:28145440   PMID:28148720   PMID:28194443   PMID:28195232   PMID:28223698  
PMID:28228282   PMID:28234900   PMID:28235764   PMID:28257233   PMID:28264694   PMID:28264978   PMID:28273457   PMID:28273458   PMID:28329706   PMID:28330904   PMID:28341672   PMID:28414329  
PMID:28417486   PMID:28420963   PMID:28431249   PMID:28438992   PMID:28439004   PMID:28450294   PMID:28459434   PMID:28459435   PMID:28472653   PMID:28483841   PMID:28489079   PMID:28504723  
PMID:28506464   PMID:28514658   PMID:28514690   PMID:28526411   PMID:28526855   PMID:28570266   PMID:28584077   PMID:28619710   PMID:28621306   PMID:28636953   PMID:28650342   PMID:28650582  
PMID:28666021   PMID:28669544   PMID:28683286   PMID:28689984   PMID:28691930   PMID:28694451   PMID:28696252   PMID:28696300   PMID:28716963   PMID:28723550   PMID:28736330   PMID:28742222  
PMID:28746740   PMID:28760957   PMID:28763796   PMID:28783664   PMID:28784628   PMID:28800592   PMID:28801233   PMID:28807414   PMID:28810892   PMID:28813661   PMID:28813662   PMID:28814744  
PMID:28834747   PMID:28836302   PMID:28836304   PMID:28836393   PMID:28839093   PMID:28847925   PMID:28852046   PMID:28867487   PMID:28878128   PMID:28884198   PMID:28888955   PMID:28889993  
PMID:28900008   PMID:28910376   PMID:28912156   PMID:28921719   PMID:28924232   PMID:28930663   PMID:28935758   PMID:28951447   PMID:28954222   PMID:28959042   PMID:28963396   PMID:28982599  
PMID:29016864   PMID:29017970   PMID:29018138   PMID:29035364   PMID:29038527   PMID:29045904   PMID:29049732   PMID:29070819   PMID:29081378   PMID:29126427   PMID:29126797   PMID:29133437  
PMID:29155051   PMID:29166591   PMID:29174000   PMID:29175959   PMID:29180395   PMID:29184215   PMID:29193293   PMID:29203799   PMID:29218724   PMID:29225599   PMID:29229785   PMID:29251592  
PMID:29286001   PMID:29301957   PMID:29311541   PMID:29323156   PMID:29326275   PMID:29335509   PMID:29339450   PMID:29339724   PMID:29356931   PMID:29363580   PMID:29376888   PMID:29386201  
PMID:29398651   PMID:29399880   PMID:29420261   PMID:29434374   PMID:29446073   PMID:29466735   PMID:29467472   PMID:29472620   PMID:29473218   PMID:29493017   PMID:29500407   PMID:29511065  
PMID:29523656   PMID:29548672   PMID:29556031   PMID:29563178   PMID:29568873   PMID:29575117   PMID:29624735   PMID:29626115   PMID:29630857   PMID:29632086   PMID:29632145   PMID:29642017  
PMID:29662169   PMID:29662171   PMID:29666241   PMID:29669747   PMID:29676784   PMID:29694903   PMID:29705291   PMID:29720578   PMID:29739975   PMID:29743491   PMID:29750189   PMID:29760073  
PMID:29769726   PMID:29777220   PMID:29786072   PMID:29789522   PMID:29809138   PMID:29853629   PMID:29861285   PMID:29863495   PMID:29915052   PMID:29934589   PMID:29941548   PMID:29958798  
PMID:29959236   PMID:29973370   PMID:29973721   PMID:29977191   PMID:29980437   PMID:29987162   PMID:30001913   PMID:30010619   PMID:30018535   PMID:30033154   PMID:30037353   PMID:30038282  
PMID:30043461   PMID:30054204   PMID:30074479   PMID:30082275   PMID:30127427   PMID:30140377   PMID:30158858   PMID:30160348   PMID:30173915   PMID:30173917   PMID:30174297   PMID:30181265  
PMID:30184491   PMID:30184509   PMID:30201764   PMID:30201775   PMID:30207169   PMID:30224810   PMID:30232263   PMID:30232285   PMID:30252950   PMID:30265749   PMID:30275444   PMID:30282022  
PMID:30305672   PMID:30322871   PMID:30323343   PMID:30333037   PMID:30355616   PMID:30359200   PMID:30386211   PMID:30399192   PMID:30409784   PMID:30417584   PMID:30442669   PMID:30453385  
PMID:30463013   PMID:30484118   PMID:30485546   PMID:30485819   PMID:30487795   PMID:30541565   PMID:30541786   PMID:30552020   PMID:30588668   PMID:30598527   PMID:30606613   PMID:30627652  
PMID:30634998   PMID:30643263   PMID:30647151   PMID:30650375   PMID:30654821   PMID:30666961   PMID:30671738   PMID:30675063   PMID:30679343   PMID:30692259   PMID:30737131   PMID:30746765  
PMID:30760484   PMID:30760929   PMID:30769286   PMID:30783017   PMID:30811995   PMID:30833511   PMID:30842418   PMID:30846482   PMID:30850344   PMID:30866963   PMID:30872165   PMID:30890724  
PMID:30909963   PMID:30910011   PMID:30948201   PMID:30951142   PMID:30988524   PMID:30996332   PMID:30996341   PMID:31023885   PMID:31036641   PMID:31045582   PMID:31048318   PMID:31053503  
PMID:31058213   PMID:31061494   PMID:31086203   PMID:31091440   PMID:31091450   PMID:31116973   PMID:31150565   PMID:31178352   PMID:31182576   PMID:31189971   PMID:31201215   PMID:31208274  
PMID:31209379   PMID:31219699   PMID:31222056   PMID:31231364   PMID:31235930   PMID:31237618   PMID:31242418   PMID:31246581   PMID:31251389   PMID:31257024   PMID:31257151   PMID:31262353  
PMID:31263146   PMID:31263278   PMID:31263398   PMID:31272490   PMID:31316515   PMID:31325968   PMID:31350310   PMID:31356156   PMID:31375314   PMID:31378907   PMID:31391580   PMID:31467036  
PMID:31471472   PMID:31489403   PMID:31491389   PMID:31501473   PMID:31540356   PMID:31541001   PMID:31586069   PMID:31618637   PMID:31626642   PMID:31636449   PMID:31636451   PMID:31652020  
PMID:31676809   PMID:31692106   PMID:31697805   PMID:31712428   PMID:31732166   PMID:31744815   PMID:31771656   PMID:31776203   PMID:31792059   PMID:31803182   PMID:31862977   PMID:31866067  
PMID:31873194   PMID:31879345   PMID:31896673   PMID:31907410   PMID:31923400   PMID:31935195   PMID:31937758   PMID:31944217   PMID:32016488   PMID:32023471   PMID:32027825   PMID:32066806  
PMID:32080187   PMID:32094172   PMID:32112058   PMID:32130903   PMID:32142677   PMID:32165624   PMID:32170061   PMID:32179066   PMID:32188932   PMID:32239625   PMID:32242005   PMID:32259484  
PMID:32269105   PMID:32276965   PMID:32284604   PMID:32286273   PMID:32290105   PMID:32341550   PMID:32348754   PMID:32389572   PMID:32439942   PMID:32451485   PMID:32453801   PMID:32457369  
PMID:32483169   PMID:32488990   PMID:32568214   PMID:32573436   PMID:32659044   PMID:32703941   PMID:32716294   PMID:32783928   PMID:32795398   PMID:32810508   PMID:32814898   PMID:32865286  
PMID:32959911   PMID:32999463   PMID:33020472   PMID:33059703   PMID:33113353  


Genomics

Comparative Map Data
Cx3cr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,877,749 - 119,897,362 (-)NCBIGRCm39mm39
GRCm389120,048,683 - 120,068,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,901,616 - 120,069,879 (-)EnsemblGRCm38mm10GRCm38
MGSCv379119,957,811 - 119,977,400 (-)NCBIGRCm37mm9NCBIm37
MGSCv369119,897,391 - 119,916,980 (-)NCBImm8
Celera9120,518,248 - 120,537,939 (-)NCBICelera
Cytogenetic Map9F4NCBI
CX3CR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl339,263,494 - 39,281,735 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl339,263,495 - 39,281,735 (-)EnsemblGRCh38hg38GRCh38
GRCh38339,263,494 - 39,281,735 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37339,304,985 - 39,323,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,279,989 - 39,296,531 (-)NCBINCBI36hg18NCBI36
Build 34339,279,990 - 39,296,526NCBI
Celera339,246,596 - 39,264,836 (-)NCBI
Cytogenetic Map3p22.2NCBI
HuRef339,347,466 - 39,365,706 (-)NCBIHuRef
CHM1_1339,256,125 - 39,274,344 (-)NCBICHM1_1
Cx3cr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08128,740,756 - 128,754,514 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8128,740,756 - 128,754,514 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08127,941,653 - 127,955,411 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48125,033,630 - 125,047,335 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18125,053,366 - 125,067,072 (-)NCBI
Celera8118,932,179 - 118,945,873 (-)NCBICelera
Cytogenetic Map8q32NCBI
Cx3cr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542724,701,073 - 24,707,230 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542724,691,206 - 24,705,599 (+)NCBIChiLan1.0ChiLan1.0
CX3CR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1339,439,009 - 39,456,797 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl339,440,955 - 39,457,219 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0339,158,346 - 39,176,604 (-)NCBIMhudiblu_PPA_v0panPan3
CX3CR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl238,938,906 - 8,952,808 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1238,937,069 - 8,954,738 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cx3cr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647328,508,726 - 28,535,640 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CX3CR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1323,944,369 - 23,957,486 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11323,944,386 - 23,957,567 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21326,204,842 - 26,218,014 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CX3CR1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115136,757 - 153,316 (+)NCBI
ChlSab1.1 Ensembl15150,718 - 151,785 (+)Ensembl
Cx3cr1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247311,705,953 - 1,719,452 (+)NCBI

Position Markers
PMC209384P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389120,051,562 - 120,052,175UniSTSGRCm38
MGSCv379119,960,680 - 119,961,293UniSTSGRCm37
Celera9120,521,122 - 120,521,735UniSTS
Cytogenetic Map9F4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1656
Count of miRNA genes:505
Interacting mature miRNAs:616
Transcripts:ENSMUST00000064165, ENSMUST00000177637
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000064165   ⟹   ENSMUSP00000063986
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,048,683 - 120,068,296 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177637   ⟹   ENSMUSP00000136413
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9119,901,616 - 120,068,283 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215016   ⟹   ENSMUSP00000150463
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,048,683 - 120,069,879 (-)Ensembl
RefSeq Acc Id: NM_009987   ⟹   NP_034117
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399119,877,749 - 119,897,362 (-)NCBI
GRCm389120,048,683 - 120,068,296 (-)NCBI
MGSCv379119,957,811 - 119,977,400 (-)RGD
Celera9120,518,238 - 120,537,953 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034117   ⟸   NM_009987
- UniProtKB: Q9Z0D9 (UniProtKB/Swiss-Prot),   Q543X3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136413   ⟸   ENSMUST00000177637
RefSeq Acc Id: ENSMUSP00000063986   ⟸   ENSMUST00000064165
RefSeq Acc Id: ENSMUSP00000150463   ⟸   ENSMUST00000215016
Protein Domains
G_PROTEIN_RECEP_F1_2

Promoters
RGD ID:6844381
Promoter ID:MM_KWN:59158
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:NM_009987
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369119,977,231 - 119,977,731 (-)MPROMDB
RGD ID:8671216
Promoter ID:EPDNEW_M13639
Type:multiple initiation site
Name:Cx3cr1_1
Description:Mus musculus chemokine (C-X3-C motif) receptor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389120,068,270 - 120,068,330EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333815 AgrOrtholog
Ensembl Genes ENSMUSG00000052336 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000063986 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000136413 UniProtKB/Swiss-Prot
  ENSMUSP00000150463 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000064165 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000177637 UniProtKB/Swiss-Prot
  ENSMUST00000215016 UniProtKB/Swiss-Prot
InterPro Chemokine_CX3CR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13051 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1333815 ENTREZGENE
NCBI Gene 13051 ENTREZGENE
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cx3cr1 PhenoGen
PRINTS FRACTALKINER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.44065 ENTREZGENE
UniProt CX3C1_MOUSE UniProtKB/Swiss-Prot
  Q543X3 ENTREZGENE, UniProtKB/TrEMBL
  Q8BR50_MOUSE UniProtKB/TrEMBL
  Q8CBJ0_MOUSE UniProtKB/TrEMBL
  Q9Z0D9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Cx3cr1  chemokine (C-X3-C motif) receptor 1    chemokine (C-X3-C) receptor 1  Symbol and/or name change 5135510 APPROVED