CX3CR1 (C-X3-C motif chemokine receptor 1) - Rat Genome Database

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Gene: CX3CR1 (C-X3-C motif chemokine receptor 1) Homo sapiens
Analyze
Symbol: CX3CR1
Name: C-X3-C motif chemokine receptor 1
RGD ID: 1352124
HGNC Page HGNC
Description: Enables C-X3-C chemokine binding activity; C-X3-C chemokine receptor activity; and CX3C chemokine receptor binding activity. Involved in antifungal innate immune response; cell adhesion; and chemotaxis. Located in cell surface and plasma membrane. Is integral component of plasma membrane. Implicated in several diseases, including human immunodeficiency virus infectious disease; obesity; pulmonary hypertension; retinal disease (multiple); and systemic scleroderma. Biomarker of atopic dermatitis; systemic lupus erythematosus; and systemic scleroderma.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: beta chemokine receptor-like 1; C-X3-C CKR-1; CCRL1; chemokine (C-C) receptor-like 1; chemokine (C-X3-C motif) receptor 1; chemokine (C-X3-C) receptor 1; CMK-BRL-1; CMK-BRL1; CMKBRL1; CMKDR1; CX3C chemokine receptor 1; fractalkine receptor; G protein-coupled receptor 13; G-protein coupled receptor 13; GPR13; GPRV28; V28
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl339,263,495 - 39,281,735 (-)EnsemblGRCh38hg38GRCh38
GRCh38339,263,494 - 39,281,735 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37339,304,985 - 39,323,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,279,989 - 39,296,531 (-)NCBINCBI36hg18NCBI36
Build 34339,279,990 - 39,296,526NCBI
Celera339,246,596 - 39,264,836 (-)NCBI
Cytogenetic Map3p22.2NCBI
HuRef339,347,466 - 39,365,706 (-)NCBIHuRef
CHM1_1339,256,125 - 39,274,344 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
age related macular degeneration 12  (IAGP)
anti-basement membrane glomerulonephritis  (ISO)
arteriosclerosis  (ISO)
arthus reaction  (ISO)
asthma  (IAGP,ISO)
atherosclerosis  (ISO)
atopic dermatitis  (IEP,ISO)
borna disease  (ISO)
Chloracne  (EXP)
Chronic Mesangial Proliferative Glomerulonephritis  (ISO)
congestive heart failure  (ISO)
conjunctivitis  (ISO)
corneal neovascularization  (ISO)
coronary artery disease  (IEA)
Coronary Disease  (EXP,IAGP)
cystitis  (ISO)
diabetes mellitus  (ISO)
Experimental Arthritis  (ISO)
Experimental Autoimmune Encephalomyelitis  (ISO)
Experimental Autoimmune Neuritis  (ISO)
Experimental Autoimmune Uveitis  (ISO)
Experimental Diabetes Mellitus  (ISO)
glaucoma  (ISO)
glomerulonephritis  (ISO)
Graft vs Host Disease  (IEP)
Hearing Loss  (ISO)
hepatopulmonary syndrome  (ISO)
Herpes Simplex Encephalitis  (ISO)
human immunodeficiency virus infectious disease  (EXP,IAGP)
Hyperalgesia  (ISO)
Inflammation  (ISO)
Intervertebral Disc Displacement  (ISO)
Intimal Hyperplasia  (ISO)
macular degeneration  (IAGP,ISO)
Memory Disorders  (ISO)
Microscopic Polyangiitis  (IEP)
Myocardial Reperfusion Injury  (IEP)
Neoplasm Metastasis  (IEP)
nephrosis  (ISO)
obesity  (IAGP)
optic nerve glioma  (ISO)
otitis media  (IAGP)
Pain  (ISO)
Parkinsonism  (ISO)
portal hypertension  (ISO)
prion disease  (ISO)
psoriasis  (IAGP)
pulmonary embolism  (ISO)
pulmonary hypertension  (IAGP,ISO)
respiratory syncytial virus infectious disease  (ISO)
retinal degeneration  (EXP,ISO)
retinal vasculitis  (IAGP)
retinitis  (ISO)
sciatic neuropathy  (ISO)
Sepsis  (IEP)
status epilepticus  (ISO)
systemic lupus erythematosus  (IEP)
systemic scleroderma  (IAGP,IEP,ISO)
transient cerebral ischemia  (ISO)
uveitis  (ISO)
Viral Bronchiolitis  (IAGP,IEP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-acetyl-1-alkyl-sn-glycero-3-phosphocholine  (EXP)
2-butoxyethanol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
Benzo[ghi]perylene  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
cadmium atom  (EXP)
cannabidiol  (ISO)
carbon nanotube  (ISO)
ceric oxide  (ISO)
choline  (EXP,ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclophosphamide  (ISO)
dextran sulfate  (ISO)
diazinon  (EXP)
dioxygen  (EXP,ISO)
disodium selenite  (EXP)
divanadium pentaoxide  (EXP)
doxorubicin  (EXP)
entinostat  (EXP)
ethanol  (ISO)
ferric oxide  (ISO)
folic acid  (ISO)
gamma-hexachlorocyclohexane  (EXP)
GW 501516  (EXP)
L-methionine  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
mechlorethamine  (ISO)
methamphetamine  (ISO)
monosodium L-glutamate  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP)
nickel atom  (EXP)
O-methyleugenol  (EXP)
ochratoxin A  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentane-2,3-dione  (ISO)
phenobarbital  (EXP)
quercetin  (ISO)
silicon dioxide  (EXP,ISO)
simvastatin  (EXP)
sodium arsenite  (EXP)
Soman  (ISO)
succimer  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
triptonide  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adaptive immune response  (ISS)
antifungal innate immune response  (IMP,ISS)
autocrine signaling  (ISS)
brain development  (ISS)
calcium-mediated signaling  (IBA)
cell adhesion  (IDA,IEA,ISS)
cell chemotaxis  (IBA)
cell-cell signaling  (TAS)
cellular defense response  (TAS)
cellular response to lipopolysaccharide  (ISO,ISS)
cellular response to transforming growth factor beta stimulus  (IEA,ISO)
central nervous system maturation  (ISS)
cerebral cortex cell migration  (ISO)
chemokine-mediated signaling pathway  (IEA)
chemotaxis  (IEA,IGI)
cytokine-mediated signaling pathway  (ISO)
G protein-coupled receptor signaling pathway  (IEA,TAS)
host-mediated regulation of intestinal microbiota composition  (ISS)
immune response  (IBA,ISS)
inflammatory response  (IEA)
innate immune response  (IC)
leukocyte chemotaxis  (ISS)
leukocyte tethering or rolling  (ISS)
macrophage chemotaxis  (ISO)
memory  (IEA,ISO)
microglial cell activation  (ISO)
microglial cell activation involved in immune response  (ISO,ISS)
modulation of chemical synaptic transmission  (ISS)
multiple spine synapse organization, single dendrite  (ISS)
negative regulation of angiogenesis  (ISO)
negative regulation of apoptotic signaling pathway  (ISS)
negative regulation of cell migration  (IEA,ISO)
negative regulation of chronic inflammatory response to non-antigenic stimulus  (ISO)
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand  (ISO)
negative regulation of hippocampal neuron apoptotic process  (ISS)
negative regulation of interleukin-1 beta production  (ISS)
negative regulation of long-term synaptic potentiation  (IEA,ISO)
negative regulation of microglial cell mediated cytotoxicity  (ISS)
phospholipase C-activating G protein-coupled receptor signaling pathway  (ISS)
positive regulation of angiogenesis  (IEA,ISO)
positive regulation of cytosolic calcium ion concentration  (IBA)
positive regulation of I-kappaB phosphorylation  (ISS)
positive regulation of microglial cell migration  (IEA)
positive regulation of monocyte chemotaxis  (IEA)
positive regulation of neuroblast proliferation  (ISO,ISS)
positive regulation of neurogenesis  (ISS)
positive regulation of NF-kappaB transcription factor activity  (ISS)
positive regulation of protein kinase B signaling  (ISS)
regulation of microglial cell migration  (TAS)
regulation of neurogenesis  (TAS)
regulation of nitric oxide biosynthetic process  (ISS)
regulation of synaptic plasticity  (TAS)
regulation of tumor necrosis factor production  (ISS)
response to ischemia  (ISS)
response to wounding  (TAS)
social behavior  (ISS)
synapse maturation  (ISS)
synapse pruning  (IC,ISS)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
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Additional References at PubMed
PMID:7590284   PMID:7646814   PMID:8125298   PMID:9390561   PMID:9726990   PMID:9782118   PMID:9931005   PMID:10415068   PMID:10702689   PMID:10731151   PMID:10754298   PMID:10869418  
PMID:10940926   PMID:11264153   PMID:11391174   PMID:11535497   PMID:11766992   PMID:11781291   PMID:11804551   PMID:11818437   PMID:11856781   PMID:11909868   PMID:12032878   PMID:12055230  
PMID:12076860   PMID:12110009   PMID:12125082   PMID:12234253   PMID:12459434   PMID:12477932   PMID:12535747   PMID:12545080   PMID:12551893   PMID:12626895   PMID:12646802   PMID:12889997  
PMID:12975017   PMID:14581400   PMID:14607932   PMID:14657873   PMID:14747189   PMID:14990582   PMID:15118174   PMID:15256432   PMID:15347678   PMID:15361546   PMID:15489334   PMID:15579768  
PMID:15644279   PMID:15681302   PMID:15726664   PMID:15809764   PMID:15871132   PMID:15886814   PMID:16019082   PMID:16026776   PMID:16144955   PMID:16224053   PMID:16284527   PMID:16314800  
PMID:16317113   PMID:16344560   PMID:16411402   PMID:16478397   PMID:16480760   PMID:16524739   PMID:16675737   PMID:16865553   PMID:16908772   PMID:16979977   PMID:17057786   PMID:17151939  
PMID:17241867   PMID:17456471   PMID:17471309   PMID:17476338   PMID:17579663   PMID:17611763   PMID:17653321   PMID:17672867   PMID:17725420   PMID:17804530   PMID:17884099   PMID:17885215  
PMID:17895402   PMID:17900259   PMID:17938902   PMID:18006432   PMID:18051367   PMID:18060687   PMID:18078680   PMID:18194290   PMID:18296082   PMID:18391751   PMID:18424766   PMID:18519809  
PMID:18609106   PMID:18615095   PMID:18617779   PMID:18633131   PMID:18636124   PMID:18676680   PMID:18772344   PMID:18845960   PMID:18938112   PMID:18974152   PMID:18996288   PMID:19001328  
PMID:19015224   PMID:19032065   PMID:19056482   PMID:19064579   PMID:19155311   PMID:19170196   PMID:19264973   PMID:19369458   PMID:19372452   PMID:19420105   PMID:19433914   PMID:19439304  
PMID:19563789   PMID:19571253   PMID:19578796   PMID:19587779   PMID:19625176   PMID:19628406   PMID:19692168   PMID:19755791   PMID:19913121   PMID:19915801   PMID:19923448   PMID:20019415  
PMID:20038229   PMID:20041188   PMID:20047517   PMID:20102414   PMID:20142115   PMID:20146987   PMID:20184883   PMID:20237496   PMID:20305648   PMID:20439195   PMID:20442634   PMID:20453000  
PMID:20506646   PMID:20511186   PMID:20531015   PMID:20538655   PMID:20628086   PMID:20667981   PMID:20974991   PMID:21038415   PMID:21091093   PMID:21132346   PMID:21157378   PMID:21278339  
PMID:21320123   PMID:21492740   PMID:21525510   PMID:21527754   PMID:21546901   PMID:21621535   PMID:21636249   PMID:21744265   PMID:21771791   PMID:21820915   PMID:21873635   PMID:21930959  
PMID:21933397   PMID:22064656   PMID:22086059   PMID:22093090   PMID:22123179   PMID:22183310   PMID:22233287   PMID:22261545   PMID:22313962   PMID:22383701   PMID:22550960   PMID:22572859  
PMID:22614623   PMID:22639377   PMID:22731642   PMID:22747084   PMID:22748631   PMID:22842622   PMID:22897138   PMID:22916279   PMID:22916723   PMID:22941344   PMID:22952674   PMID:23086480  
PMID:23125415   PMID:23206327   PMID:23229614   PMID:23303826   PMID:23388733   PMID:23414540   PMID:23499256   PMID:23570708   PMID:23584220   PMID:23716478   PMID:23857671   PMID:23956503  
PMID:23974513   PMID:24033604   PMID:24060055   PMID:24084767   PMID:24177428   PMID:24245985   PMID:24270813   PMID:24287500   PMID:24307998   PMID:24324211   PMID:24342397   PMID:24352739  
PMID:24401612   PMID:24496565   PMID:24750723   PMID:24788416   PMID:24789099   PMID:24806473   PMID:24862326   PMID:24930044   PMID:24998320   PMID:25024136   PMID:25221380   PMID:25255875  
PMID:25313609   PMID:25320221   PMID:25420917   PMID:25482732   PMID:25502213   PMID:25503251   PMID:25547797   PMID:25596452   PMID:25830914   PMID:25845619   PMID:25898802   PMID:25948251  
PMID:25962684   PMID:25987130   PMID:26042517   PMID:26107373   PMID:26123579   PMID:26141368   PMID:26189830   PMID:26276874   PMID:26297201   PMID:26464724   PMID:26567742   PMID:26633537  
PMID:26651305   PMID:26813566   PMID:27011244   PMID:27013693   PMID:27031442   PMID:27118566   PMID:27176135   PMID:27941884   PMID:28128806   PMID:28196748   PMID:28315475   PMID:28342179  
PMID:28343297   PMID:28398520   PMID:28691930   PMID:28763059   PMID:28791023   PMID:28845524   PMID:28986258   PMID:29217163   PMID:29274778   PMID:29326275   PMID:29415879   PMID:29433150  
PMID:29446734   PMID:29485193   PMID:29565837   PMID:30066854   PMID:30305672   PMID:30352020   PMID:30381070   PMID:30554983   PMID:30575118   PMID:30776726   PMID:30886214   PMID:30948201  
PMID:31077234   PMID:31209379   PMID:31652730   PMID:31726465   PMID:31744836   PMID:31964743   PMID:32179066   PMID:32236410   PMID:32295454   PMID:32296183   PMID:32579729   PMID:32686027  
PMID:32866728   PMID:32884948   PMID:32922201   PMID:33641164   PMID:33665864   PMID:34046028   PMID:34321227  


Genomics

Comparative Map Data
CX3CR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl339,263,495 - 39,281,735 (-)EnsemblGRCh38hg38GRCh38
GRCh38339,263,494 - 39,281,735 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37339,304,985 - 39,323,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,279,989 - 39,296,531 (-)NCBINCBI36hg18NCBI36
Build 34339,279,990 - 39,296,526NCBI
Celera339,246,596 - 39,264,836 (-)NCBI
Cytogenetic Map3p22.2NCBI
HuRef339,347,466 - 39,365,706 (-)NCBIHuRef
CHM1_1339,256,125 - 39,274,344 (-)NCBICHM1_1
Cx3cr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,877,749 - 119,897,362 (-)NCBIGRCm39mm39
GRCm39 Ensembl9119,730,682 - 119,898,945 (-)Ensembl
GRCm389120,048,683 - 120,068,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,901,616 - 120,069,879 (-)EnsemblGRCm38mm10GRCm38
MGSCv379119,957,811 - 119,977,400 (-)NCBIGRCm37mm9NCBIm37
MGSCv369119,897,391 - 119,916,980 (-)NCBImm8
Celera9120,518,248 - 120,537,939 (-)NCBICelera
Cytogenetic Map9F4NCBI
Cx3cr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28119,785,726 - 119,799,431 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl8119,782,595 - 119,800,014 (-)Ensembl
Rnor_6.08128,740,756 - 128,754,514 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8128,740,756 - 128,754,514 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08127,941,653 - 127,955,411 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48125,033,630 - 125,047,335 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18125,053,366 - 125,067,072 (-)NCBI
Celera8118,932,179 - 118,945,873 (-)NCBICelera
Cytogenetic Map8q32NCBI
Cx3cr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542724,701,073 - 24,707,230 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542724,691,206 - 24,705,599 (+)NCBIChiLan1.0ChiLan1.0
CX3CR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1339,439,009 - 39,456,797 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl339,440,955 - 39,457,219 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0339,158,346 - 39,176,604 (-)NCBIMhudiblu_PPA_v0panPan3
CX3CR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1238,937,069 - 8,954,738 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl238,938,906 - 8,952,808 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha238,974,330 - 8,988,240 (-)NCBI
ROS_Cfam_1.0239,221,526 - 9,239,150 (-)NCBI
UMICH_Zoey_3.1239,036,770 - 9,050,661 (-)NCBI
UNSW_CanFamBas_1.0239,179,594 - 9,193,497 (-)NCBI
UU_Cfam_GSD_1.0239,172,979 - 9,186,888 (-)NCBI
Cx3cr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118195,370,137 - 195,397,149 (-)NCBI
SpeTri2.0NW_00493647328,508,726 - 28,535,640 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CX3CR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1323,944,369 - 23,957,486 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11323,944,386 - 23,957,567 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21326,204,842 - 26,218,014 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CX3CR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115136,757 - 153,316 (+)NCBI
ChlSab1.1 Ensembl15150,718 - 151,785 (+)Ensembl
Vero_WHO_p1.0NW_0236660638,861,161 - 8,878,212 (+)NCBI
Cx3cr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247311,705,953 - 1,719,452 (+)NCBI

Position Markers
D3S2853E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37339,305,064 - 39,305,143UniSTSGRCh37
Build 36339,280,068 - 39,280,147RGDNCBI36
Celera339,246,675 - 39,246,754RGD
Cytogenetic Map3p21.3UniSTS
HuRef339,347,545 - 39,347,624UniSTS
TNG Radiation Hybrid Map324302.0UniSTS
GeneMap99-GB4 RH Map3135.51UniSTS
RH91803  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37339,306,318 - 39,306,462UniSTSGRCh37
Build 36339,281,322 - 39,281,466RGDNCBI36
Celera339,247,929 - 39,248,073RGD
Cytogenetic Map3p21.3UniSTS
HuRef339,348,799 - 39,348,943UniSTS
GeneMap99-GB4 RH Map3124.02UniSTS
D3S2899E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37339,305,064 - 39,305,242UniSTSGRCh37
Build 36339,280,068 - 39,280,246RGDNCBI36
Celera339,246,675 - 39,246,853RGD
Cytogenetic Map3p21.3UniSTS
HuRef339,347,545 - 39,347,723UniSTS
PMC135988P14  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37339,307,312 - 39,307,783UniSTSGRCh37
Build 36339,282,316 - 39,282,787RGDNCBI36
Celera339,248,923 - 39,249,394RGD
Cytogenetic Map3p21.3UniSTS
HuRef339,349,793 - 39,350,264UniSTS
CX3CR1_554  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37339,306,484 - 39,307,233UniSTSGRCh37
Build 36339,281,488 - 39,282,237RGDNCBI36
Celera339,248,095 - 39,248,844RGD
HuRef339,348,965 - 39,349,714UniSTS
SGC44481  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37339,312,372 - 39,312,572UniSTSGRCh37
Build 36339,287,376 - 39,287,576RGDNCBI36
Celera339,253,984 - 39,254,184RGD
Cytogenetic Map3p21.3UniSTS
HuRef339,354,854 - 39,355,054UniSTS
GeneMap99-GB4 RH Map3124.12UniSTS
Whitehead-RH Map3144.5UniSTS
RH18026  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37339,306,815 - 39,306,998UniSTSGRCh37
Build 36339,281,819 - 39,282,002RGDNCBI36
Celera339,248,426 - 39,248,609RGD
Cytogenetic Map3p21.3UniSTS
HuRef339,349,296 - 39,349,479UniSTS
GeneMap99-GB4 RH Map3135.41UniSTS
SHGC-44481  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37339,312,489 - 39,312,590UniSTSGRCh37
Build 36339,287,493 - 39,287,594RGDNCBI36
Celera339,254,101 - 39,254,202RGD
Cytogenetic Map3p21.3UniSTS
HuRef339,354,971 - 39,355,072UniSTS
TNG Radiation Hybrid Map324309.0UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map5q32-q34UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map7q32.2UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map14q31-q32.1UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map20p11.23-p11.21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map12q24.11UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map7q34-q35UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map6p25.1-p23UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map13q12.1UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map12p13.1-p12.3UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map3p21.2UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic MapXp21.2UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map9q21.12UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map12p13-p12UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map6p22UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic MapXp11.2UniSTS
Cytogenetic Map19pUniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map11p15.3-p15.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map8q22UniSTS
Cytogenetic Map4p15.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map2p16.3UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map6q24.3UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map6q22.1UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map15q22.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map3p21-p12UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p22-p21.33UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map9q22UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map2q31.3UniSTS
Cytogenetic Map1q31UniSTS
Cytogenetic Map7q32-q33UniSTS
Cytogenetic Map7q21.1UniSTS
Cytogenetic Map14q23-q24.2UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map2p24-p21UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map17q25.2UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map10p12.33UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic MapXq25-q26UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map15q25UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map3q26.31UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q26.2-q27UniSTS
Cytogenetic Map1q25.1-q25.2UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map14q12-q13UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic MapXq23UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map4q32-q34UniSTS
Cytogenetic MapXq25-q26.1UniSTS
Cytogenetic Map2p25-p24UniSTS
Cytogenetic Map2p25UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic MapXp22.2-p22.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map20q11.22-q12UniSTS
Cytogenetic Map4q34.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map12q13-q14UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map9q31.2UniSTS
Cytogenetic Map11q13.1-q13.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map21q21.2UniSTS
Cytogenetic Map10q24.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map8q21.1UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map4q21.3UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map2q36.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map18q12.2UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map1p35UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map20p12UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map4q22.1-q23UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map9p22UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2p22.3UniSTS
Cytogenetic MapXq26.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map22q13.3UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map11p14UniSTS
Cytogenetic Map1p32.1UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map4q34.3UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map11q23.2UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map3p13UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map15q22-q24UniSTS
Cytogenetic Map8q23UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map13q33.1UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map4q31.3UniSTS
Cytogenetic Map15q21-q22UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map15q22.1-q22.31UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic MapXq13UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map14q32.1UniSTS
Cytogenetic Map16q12-q13UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map1q42.1-q43UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map8q24.21UniSTS
Cytogenetic Map12q13.1UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map5q31.2-q34UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map6q24.2UniSTS
Cytogenetic Map22qUniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic MapXp22.12-p22.11UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map8p22-p21.3UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map1p36.12UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map7p14-p13UniSTS
Cytogenetic Map12q24.2UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map7q22-qterUniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map1q32.2-q41UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map5p15.1-p14.3UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map3p12.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map3q28UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic MapXq22.2UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map7p15.1UniSTS
Cytogenetic Map2q37.2UniSTS
Cytogenetic Map18q22.3UniSTS
Cytogenetic Map14q32.13UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map16p13.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map20q13.2-q13.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map13q13.3UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map18p11.2UniSTS
Cytogenetic Map7p11.1UniSTS
Cytogenetic Map1q31-q32UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map6q24.1UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map17q11-q21UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map8q12.3UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map18p11.3UniSTS
Cytogenetic Map17q11.1UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map13q12.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q32-q34UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6q23-q24UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q16.1-q16.3UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map7q31.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3q25.2UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4186
Count of miRNA genes:754
Interacting mature miRNAs:839
Transcripts:ENST00000358309, ENST00000399220, ENST00000412814, ENST00000435290, ENST00000541347, ENST00000542107
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 4 397 19 1 425 1 25 1 427 57 54 51 1 23 1
Low 722 1500 958 386 880 252 2480 774 2704 221 859 965 134 650 1787 1
Below cutoff 1623 1070 717 219 518 192 1730 1365 528 98 463 464 30 1 551 973

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_016362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001171171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001171172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001171174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC092053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI400350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK312373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY016370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG541473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA396634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA406242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB274136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF064744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU006531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ258357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U20350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U28934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000358309   ⟹   ENSP00000351059
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl339,263,495 - 39,281,735 (-)Ensembl
RefSeq Acc Id: ENST00000399220   ⟹   ENSP00000382166
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl339,263,496 - 39,280,036 (-)Ensembl
RefSeq Acc Id: ENST00000412814   ⟹   ENSP00000408835
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl339,266,191 - 39,281,273 (-)Ensembl
RefSeq Acc Id: ENST00000435290   ⟹   ENSP00000394960
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl339,266,011 - 39,280,439 (-)Ensembl
RefSeq Acc Id: ENST00000541347   ⟹   ENSP00000439140
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl339,263,495 - 39,281,273 (-)Ensembl
RefSeq Acc Id: ENST00000542107   ⟹   ENSP00000444928
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl339,263,495 - 39,280,439 (-)Ensembl
RefSeq Acc Id: NM_001171171   ⟹   NP_001164642
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38339,263,496 - 39,281,273 (-)NCBI
GRCh37339,304,985 - 39,323,226 (-)ENTREZGENE
HuRef339,347,466 - 39,365,706 (-)ENTREZGENE
CHM1_1339,256,125 - 39,273,882 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001171172   ⟹   NP_001164643
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38339,263,496 - 39,280,441 (-)NCBI
GRCh37339,304,985 - 39,323,226 (-)ENTREZGENE
HuRef339,347,466 - 39,365,706 (-)ENTREZGENE
CHM1_1339,256,125 - 39,273,048 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001171174   ⟹   NP_001164645
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38339,263,494 - 39,281,735 (-)NCBI
GRCh37339,304,985 - 39,323,226 (-)ENTREZGENE
HuRef339,347,466 - 39,365,706 (-)ENTREZGENE
CHM1_1339,256,125 - 39,274,344 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001337   ⟹   NP_001328
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38339,263,496 - 39,280,036 (-)NCBI
GRCh37339,304,985 - 39,323,226 (-)ENTREZGENE
Build 36339,279,989 - 39,296,531 (-)NCBI Archive
HuRef339,347,466 - 39,365,706 (-)ENTREZGENE
CHM1_1339,256,125 - 39,272,645 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001164645   ⟸   NM_001171174
- Peptide Label: isoform a
- UniProtKB: P49238 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001164642   ⟸   NM_001171171
- Peptide Label: isoform b
- UniProtKB: P49238 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001164643   ⟸   NM_001171172
- Peptide Label: isoform b
- UniProtKB: P49238 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001328   ⟸   NM_001337
- Peptide Label: isoform b
- UniProtKB: P49238 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000439140   ⟸   ENST00000541347
RefSeq Acc Id: ENSP00000382166   ⟸   ENST00000399220
RefSeq Acc Id: ENSP00000444928   ⟸   ENST00000542107
RefSeq Acc Id: ENSP00000408835   ⟸   ENST00000412814
RefSeq Acc Id: ENSP00000394960   ⟸   ENST00000435290
RefSeq Acc Id: ENSP00000351059   ⟸   ENST00000358309
Protein Domains
G_PROTEIN_RECEP_F1_2

Promoters
RGD ID:6864000
Promoter ID:EPDNEW_H5165
Type:multiple initiation site
Name:CX3CR1_1
Description:C-X3-C motif chemokine receptor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H5166  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38339,280,035 - 39,280,095EPDNEW
RGD ID:6864002
Promoter ID:EPDNEW_H5166
Type:initiation region
Name:CX3CR1_2
Description:C-X3-C motif chemokine receptor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H5165  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38339,281,675 - 39,281,735EPDNEW
RGD ID:6800813
Promoter ID:HG_KWN:44483
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:NB4
Transcripts:NM_001171172,   NM_001337
Position:
Human AssemblyChrPosition (strand)Source
Build 36339,296,261 - 39,296,761 (-)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001171174.1(CX3CR1):c.881T>C (p.Phe294Ser) single nucleotide variant not provided [RCV000106289] Chr3:39265725 [GRCh38]
Chr3:39307216 [GRCh37]
Chr3:3p22.2
not provided
GRCh38/hg38 3p22.3-22.1(chr3:33728406-40662451)x3 copy number gain See cases [RCV000134924] Chr3:33728406..40662451 [GRCh38]
Chr3:33769898..40703942 [GRCh37]
Chr3:33744902..40678946 [NCBI36]
Chr3:3p22.3-22.1
pathogenic
GRCh38/hg38 3p26.3-22.1(chr3:53308-41381521)x3 copy number gain See cases [RCV000141810] Chr3:53308..41381521 [GRCh38]
Chr3:94991..41423012 [GRCh37]
Chr3:69991..41398016 [NCBI36]
Chr3:3p26.3-22.1
pathogenic
GRCh37/hg19 3p22.2-21.31(chr3:37028313-49929220)x3 copy number gain See cases [RCV000240519] Chr3:37028313..49929220 [GRCh37]
Chr3:3p22.2-21.31
likely pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p24.3-21.31(chr3:16923595-45249923)x2,3 copy number gain not provided [RCV000682249] Chr3:16923595..45249923 [GRCh37]
Chr3:3p24.3-21.31
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
NM_001337.4(CX3CR1):c.117C>T (p.Ser39=) single nucleotide variant not provided [RCV000963288] Chr3:39266393 [GRCh38]
Chr3:39307884 [GRCh37]
Chr3:3p22.2
likely benign
NM_001337.4(CX3CR1):c.456C>T (p.Gly152=) single nucleotide variant not provided [RCV000894726] Chr3:39266054 [GRCh38]
Chr3:39307545 [GRCh37]
Chr3:3p22.2
benign
NM_001337.4(CX3CR1):c.825C>T (p.Leu275=) single nucleotide variant not provided [RCV000943297] Chr3:39265685 [GRCh38]
Chr3:39307176 [GRCh37]
Chr3:3p22.2
likely benign
NM_001337.4(CX3CR1):c.765G>A (p.Thr255=) single nucleotide variant not provided [RCV000971356] Chr3:39265745 [GRCh38]
Chr3:39307236 [GRCh37]
Chr3:3p22.2
benign
NM_001337.4(CX3CR1):c.1054T>C (p.Leu352=) single nucleotide variant not provided [RCV000964907] Chr3:39265456 [GRCh38]
Chr3:39306947 [GRCh37]
Chr3:3p22.2
benign
NM_001337.4(CX3CR1):c.335G>C (p.Gly112Ala) single nucleotide variant not provided [RCV000927527] Chr3:39266175 [GRCh38]
Chr3:39307666 [GRCh37]
Chr3:3p22.2
likely benign
NM_001337.4(CX3CR1):c.39G>T (p.Glu13Asp) single nucleotide variant not provided [RCV000952834] Chr3:39266471 [GRCh38]
Chr3:39307962 [GRCh37]
Chr3:3p22.2
benign
NM_001337.4(CX3CR1):c.576T>C (p.Asn192=) single nucleotide variant not provided [RCV000894852] Chr3:39265934 [GRCh38]
Chr3:39307425 [GRCh37]
Chr3:3p22.2
likely benign
NM_001337.4(CX3CR1):c.74A>G (p.Asp25Gly) single nucleotide variant not provided [RCV000958062] Chr3:39266436 [GRCh38]
Chr3:39307927 [GRCh37]
Chr3:3p22.2
likely benign
NM_001337.4(CX3CR1):c.169A>G (p.Thr57Ala) single nucleotide variant not provided [RCV000958294] Chr3:39266341 [GRCh38]
Chr3:39307832 [GRCh37]
Chr3:3p22.2
likely benign
NM_001337.4(CX3CR1):c.319G>A (p.Ala107Thr) single nucleotide variant not provided [RCV001354309] Chr3:39266191 [GRCh38]
Chr3:39307682 [GRCh37]
Chr3:3p22.2
uncertain significance
NM_001171174.1(CX3CR1):c.10C>G (p.Pro4Ala) single nucleotide variant Coronary heart disease 1 [RCV001280984] Chr3:39281686 [GRCh38]
Chr3:39323177 [GRCh37]
Chr3:3p22.2
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:2558 AgrOrtholog
COSMIC CX3CR1 COSMIC
Ensembl Genes ENSG00000168329 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000351059 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000382166 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000394960 UniProtKB/TrEMBL
  ENSP00000408835 UniProtKB/TrEMBL
  ENSP00000439140 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000444928 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000358309 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000399220 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000412814 UniProtKB/TrEMBL
  ENST00000435290 UniProtKB/TrEMBL
  ENST00000541347 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000542107 ENTREZGENE, UniProtKB/Swiss-Prot
GTEx ENSG00000168329 GTEx
HGNC ID HGNC:2558 ENTREZGENE
Human Proteome Map CX3CR1 Human Proteome Map
InterPro Chemokine_CX3CR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:1524 UniProtKB/Swiss-Prot
NCBI Gene 1524 ENTREZGENE
OMIM 601470 OMIM
  607339 OMIM
  609423 OMIM
  613784 OMIM
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA27054 PharmGKB
PRINTS FRACTALKINER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt C9JLM2_HUMAN UniProtKB/TrEMBL
  C9JN40_HUMAN UniProtKB/TrEMBL
  CX3C1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0N0N6 UniProtKB/Swiss-Prot
  B2R5Z4 UniProtKB/Swiss-Prot
  J3KP17 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-21 CX3CR1  C-X3-C motif chemokine receptor 1    chemokine (C-X3-C motif) receptor 1  Symbol and/or name change 5135510 APPROVED