Advanced Search (OLGA)

Gene: KCNH1 (potassium voltage-gated channel subfamily H member 1) Sus scrofa

Subscribe to Updates

Analyze

Symbol:

KCNH1

Name:

potassium voltage-gated channel subfamily H member 1

RGD ID:

13972119

Description:

ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); cyclic nucleotide binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); monoatomic ion transmembrane transport (ortholog); potassium ion transmembrane transport (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); colorectal adenocarcinoma (ortholog); Developmental Disease (ortholog); FOUND IN axolemma (ortholog); axon (ortholog); cell surface (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

potassium voltage-gated channel, subfamily H (eag-related), member 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	131,960,480 - 132,334,953 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	131,960,566 - 132,336,029 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	145,245,936 - 145,368,735 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
KCNH1	Pig	colorectal adenocarcinoma	severity	ISO	KCNH1 (Homo sapiens)	9068941	DNA:amplification: (human)	RGD	PMID:17289873 and REF_RGD_ID:9693694
KCNH1	Pig	hepatocellular carcinoma		ISO	KCNH1 (Homo sapiens)	9068941	protein:increased expression:liver (human)	RGD	PMID:17022810 and REF_RGD_ID:9693723
KCNH1	Pig	renal cell carcinoma		ISO	KCNH1 (Homo sapiens)	9068941	protein:increased expression:kidney (human)	RGD	PMID:18777199 and REF_RGD_ID:9693695

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
KCNH1	Pig	Developmental Disease		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental disorder	ClinVar	PMID:25741868
KCNH1	Pig	epilepsy		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Seizure	ClinVar	PMID:23020937 more ...
KCNH1	Pig	gastrointestinal stromal tumor		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
KCNH1	Pig	genetic disease		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:23020937 more ...
KCNH1	Pig	intellectual disability		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
KCNH1	Pig	intellectual disability		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:23020937 more ...
KCNH1	Pig	Neurodevelopmental Disorders		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
KCNH1	Pig	parathyroid carcinoma		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
KCNH1	Pig	Temple-Baraitser syndrome		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:18203178 more ...
KCNH1	Pig	Zimmerman Laband Syndrome		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Laband syndrome	ClinVar	PMID:23020937 more ...
KCNH1	Pig	Zimmermann-Laband Syndrome 1		ISO	KCNH1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:18541964 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
KCNH1	Pig	Breast Neoplasms		ISO	KCNH1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:17520698
KCNH1	Pig	osteosarcoma		ISO	KCNH1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:22248279

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
KCNH1	Pig	Temple-Baraitser syndrome		ISO	KCNH1 (Homo sapiens)	7240710		OMIM
KCNH1	Pig	Zimmermann-Laband Syndrome 1		ISO	KCNH1 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
KCNH1	Pig	cellular response to calcium ion		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:8790430 and REF_RGD_ID:9693720
KCNH1	Pig	cellular response to calcium ion	involved_in	IEA	UniProtKB:O95259 and ensembl:ENSP00000271751	150520179		Ensembl	GO_REF:0000107
KCNH1	Pig	monoatomic ion transmembrane transport		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:24495567 and REF_RGD_ID:9693685
KCNH1	Pig	monoatomic ion transmembrane transport	involved_in	IEA	UniProtKB-KW:KW-0407 and UniProtKB-KW:KW-0851	150520179		UniProt	GO_REF:0000043
KCNH1	Pig	monoatomic ion transport	involved_in	IEA	UniProtKB-KW:KW-0406	150520179		UniProt	GO_REF:0000043
KCNH1	Pig	monoatomic ion transport	involved_in	IEA	InterPro:IPR005821	150520179		InterPro	GO_REF:0000002
KCNH1	Pig	potassium ion transmembrane transport	involved_in	IEA	UniProtKB:O95259 and ensembl:ENSP00000271751	150520179		Ensembl	GO_REF:0000107
KCNH1	Pig	potassium ion transmembrane transport	involved_in	IBA	MGI:1341721 more ...	150520179		GO_Central	GO_REF:0000033
KCNH1	Pig	potassium ion transmembrane transport	involved_in	IEA	UniProtKB-KW:KW-0631	150520179		UniProt	GO_REF:0000043
KCNH1	Pig	potassium ion transmembrane transport		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:7925287 more ...
KCNH1	Pig	potassium ion transport	involved_in	IEA	UniProtKB:O95259 and ensembl:ENSP00000271751	150520179		Ensembl	GO_REF:0000107
KCNH1	Pig	potassium ion transport	involved_in	IEA	InterPro:IPR003938 and InterPro:IPR003949	150520179		InterPro	GO_REF:0000002
KCNH1	Pig	potassium ion transport	involved_in	IEA	UniProtKB-KW:KW-0633	150520179		UniProt	GO_REF:0000043
KCNH1	Pig	regulation of cell population proliferation	involved_in	IEA	UniProtKB:O95259 and ensembl:ENSP00000271751	150520179		Ensembl	GO_REF:0000107
KCNH1	Pig	regulation of membrane potential	involved_in	IBA	MGI:1341722 more ...	150520179		GO_Central	GO_REF:0000033
KCNH1	Pig	regulation of presynaptic cytosolic calcium ion concentration	involved_in	ISO	Kcnh1 (Mus musculus)	9068941	PMID:25556795	SynGO	PMID:25556795
KCNH1	Pig	regulation of synaptic vesicle exocytosis	involved_in	ISO	Kcnh1 (Mus musculus)	9068941	PMID:25556795	SynGO	PMID:25556795
KCNH1	Pig	startle response		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:24284010 and REF_RGD_ID:9693684
KCNH1	Pig	transmembrane transport	involved_in	IEA	InterPro:IPR005821	150520179		InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
KCNH1	Pig	axolemma		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:20111597 and REF_RGD_ID:9693719
KCNH1	Pig	axon		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:24495567 and REF_RGD_ID:9693685
KCNH1	Pig	cell surface		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:21646358 and REF_RGD_ID:9693690
KCNH1	Pig	dendrite		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:24495567 and REF_RGD_ID:9693685
KCNH1	Pig	early endosome membrane	located_in	IEA	UniProtKB:O95259 and ensembl:ENSP00000271751	150520179		Ensembl	GO_REF:0000107
KCNH1	Pig	intracellular membrane-bounded organelle	located_in	IEA	UniProtKB:O95259 and ensembl:ENSP00000271751	150520179		Ensembl	GO_REF:0000107
KCNH1	Pig	membrane	located_in	IEA	InterPro:IPR003938 more ...	150520179		InterPro	GO_REF:0000002
KCNH1	Pig	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
KCNH1	Pig	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	150520179		UniProt	GO_REF:0000044
KCNH1	Pig	monoatomic ion channel complex	part_of	IEA	UniProtKB-KW:KW-0851	150520179		UniProt	GO_REF:0000043
KCNH1	Pig	neuronal cell body		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:24495567 and REF_RGD_ID:9693685
KCNH1	Pig	nuclear inner membrane		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:21559285 and REF_RGD_ID:9693693
KCNH1	Pig	parallel fiber to Purkinje cell synapse	is_active_in	ISO	Kcnh1 (Mus musculus)	9068941	PMID:25556795	SynGO	PMID:25556795
KCNH1	Pig	perinuclear region of cytoplasm		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:18650019 and REF_RGD_ID:9693716
KCNH1	Pig	plasma membrane	located_in	IEA	UniProtKB:O95259 and ensembl:ENSP00000271751	150520179		Ensembl	GO_REF:0000107
KCNH1	Pig	plasma membrane	is_active_in	IBA	FB:FBgn0000535 more ...	150520179		GO_Central	GO_REF:0000033
KCNH1	Pig	postsynaptic density membrane	is_active_in	ISO	Kcnh1 (Rattus norvegicus)	9068941	PMID:24495567	SynGO	PMID:24495567 and REF_RGD_ID:9693685
KCNH1	Pig	potassium channel complex	part_of	ISO	Kcnh1 (Rattus norvegicus)	9068941	PMID:27516594	UniProt	PMID:27516594 and REF_RGD_ID:11533419
KCNH1	Pig	presynaptic membrane		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:20111597 and REF_RGD_ID:9693719
KCNH1	Pig	presynaptic membrane	is_active_in	ISO	Kcnh1 (Rattus norvegicus)	9068941	PMID:25556795	SynGO	PMID:25556795 and REF_RGD_ID:13702416
KCNH1	Pig	voltage-gated potassium channel complex	part_of	IEA	UniProtKB:O95259 and ensembl:ENSP00000271751	150520179		Ensembl	GO_REF:0000107
KCNH1	Pig	voltage-gated potassium channel complex	part_of	IBA	FB:FBgn0000535 more ...	150520179		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
KCNH1	Pig	14-3-3 protein binding		ISO	Ywhaq (Rattus norvegicus)	9068941		RGD	PMID:22911758 and REF_RGD_ID:9693692
KCNH1	Pig	calmodulin binding	enables	IEA	UniProtKB-KW:KW-0112	150520179		UniProt	GO_REF:0000043
KCNH1	Pig	cyclic nucleotide binding	NOT\|enables	ISO	Kcnh1 (Mus musculus)	9068941	PMID:19671703	UniProt	PMID:19671703
KCNH1	Pig	delayed rectifier potassium channel activity	enables	IBA	MGI:1341721 more ...	150520179		GO_Central	GO_REF:0000033
KCNH1	Pig	delayed rectifier potassium channel activity	enables	IEA	UniProtKB:O95259 and ensembl:ENSP00000271751	150520179		Ensembl	GO_REF:0000107
KCNH1	Pig	identical protein binding		ISO	Kcnh1 (Rattus norvegicus)	9068941		RGD	PMID:21646358 and REF_RGD_ID:9693690
KCNH1	Pig	monoatomic ion channel activity	enables	IEA	InterPro:IPR005821	150520179		InterPro	GO_REF:0000002
KCNH1	Pig	phosphatidylinositol bisphosphate binding	enables	IEA	UniProtKB:O95259 and ensembl:ENSP00000271751	150520179		Ensembl	GO_REF:0000107
KCNH1	Pig	potassium channel activity	enables	IEA	UniProtKB-KW:KW-0631	150520179		UniProt	GO_REF:0000043
KCNH1	Pig	protein binding		ISO	Alg10 (Rattus norvegicus)	9068941		RGD	PMID:9722534 and REF_RGD_ID:1299478
KCNH1	Pig	protein binding	enables	ISO	UniProtKB:P02638	9068941	PMID:20708613	IntAct	PMID:20708613
KCNH1	Pig	protein binding	enables	ISO	UniProtKB:O00560 more ...	9068941	PMID:25416956	IntAct	PMID:25416956
KCNH1	Pig	protein binding	enables	ISO	UniProtKB:O35550	9068941	PMID:22841712	IntAct	PMID:22841712 and REF_RGD_ID:8553845
KCNH1	Pig	protein binding		ISO	Epn1 (Rattus norvegicus)	9068941		RGD	PMID:10559257 and REF_RGD_ID:9693722
KCNH1	Pig	protein kinase binding		ISO	Src (Rattus norvegicus)	9068941		RGD	PMID:11834728 and REF_RGD_ID:634207
KCNH1	Pig	protein-containing complex binding		ISO	Kcnh5 (Rattus norvegicus)	9068941	heterodimerization	RGD	PMID:25008323 and REF_RGD_ID:9693717
KCNH1	Pig	transmembrane transporter binding		ISO	Kcnh5 (Rattus norvegicus)	9068941		RGD	PMID:25008323 and REF_RGD_ID:9693717
KCNH1	Pig	voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential	enables	ISO	Kcnh1 (Mus musculus)	9068941	PMID:25556795	SynGO	PMID:25556795
KCNH1	Pig	voltage-gated potassium channel activity	enables	IEA	InterPro:IPR003938 and InterPro:IPR003949	150520179		InterPro	GO_REF:0000002
KCNH1	Pig	voltage-gated potassium channel activity	enables	IEA	ARBA:ARBA00026458	150520179		UniProt	GO_REF:0000117

PMID:22301074	PMID:30032202

KCNH1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	131,960,480 - 132,334,953 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	131,960,566 - 132,336,029 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	145,245,936 - 145,368,735 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KCNH1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	210,678,314 - 211,134,148 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	210,676,823 - 211,134,165 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	210,851,656 - 211,307,490 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	208,923,178 - 209,374,080 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	207,244,949 - 207,695,852	NCBI
Celera	1	184,078,007 - 184,534,030 (-)	NCBI		Celera
Cytogenetic Map	1	q32.2	NCBI
HuRef	1	181,528,354 - 181,984,466 (-)	NCBI		HuRef
CHM1_1	1	212,124,419 - 212,580,029 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	209,920,145 - 210,379,828 (-)	NCBI		T2T-CHM13v2.0

Kcnh1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	191,871,759 - 192,192,467 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	191,873,082 - 192,192,467 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	192,189,144 - 192,510,159 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	192,190,774 - 192,510,159 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	194,014,754 - 194,334,040 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	193,891,596 - 194,210,882 (+)	NCBI		MGSCv36	mm8
Celera	1	199,081,917 - 199,396,846 (+)	NCBI		Celera
Cytogenetic Map	1	H6	NCBI
cM Map	1	97.33	NCBI

Kcnh1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	106,253,101 - 106,555,712 (+)	NCBI		GRCr8
mRatBN7.2	13	103,722,140 - 104,024,762 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	103,722,245 - 104,024,740 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	106,242,159 - 106,544,653 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	107,626,002 - 107,928,502 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	104,840,996 - 105,143,620 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	110,920,712 - 111,232,291 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	110,920,737 - 111,232,269 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	115,478,526 - 115,789,705 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	108,129,617 - 108,407,815 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	108,318,724 - 108,596,919 (+)	NCBI
Celera	13	103,160,967 - 103,461,850 (+)	NCBI		Celera
Cytogenetic Map	13	q27	NCBI

Kcnh1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955489	1,179,053 - 1,545,355 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955489	1,176,615 - 1,549,880 (+)	NCBI	ChiLan1.0	ChiLan1.0

KCNH1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	38,274,955 - 38,737,394 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	38,239,979 - 38,703,633 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	186,233,881 - 186,696,509 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	191,102,299 - 191,561,879 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	191,107,256 - 191,562,766 (-)	Ensembl	panpan1.1		panPan2

KCNH1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	9,317,804 - 9,631,144 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	9,252,488 - 9,631,150 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	8,829,600 - 9,206,958 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	8,949,600 - 9,333,811 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	8,954,637 - 9,334,074 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	8,881,430 - 9,257,585 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	8,973,450 - 9,359,036 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	9,110,853 - 9,483,089 (-)	NCBI		UU_Cfam_GSD_1.0

Kcnh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	64,893,289 - 65,249,587 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	2,133,564 - 2,493,155 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	2,133,596 - 2,493,170 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KCNH1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	18,353,356 - 18,788,472 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	18,353,482 - 18,783,592 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	18,890,057 - 19,338,331 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kcnh1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	1,056,313 - 1,388,491 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	1,019,347 - 1,392,433 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in KCNH1
20196 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
5	2	22	3	4	4	4	22	2	3	1


RefSeq Transcripts	XM_021063876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU972492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP312784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01107250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000057669 ⟹ ENSSSCP00000041669

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	131,960,480 - 132,334,953 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000102813 ⟹ ENSSSCP00000078328

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	131,960,553 - 132,334,953 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000106098 ⟹ ENSSSCP00000076674

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	131,960,553 - 132,334,953 (+)	Ensembl

RefSeq Acc Id:

XM_021063876 ⟹ XP_020919535

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	131,960,566 - 132,336,029 (+)	NCBI

Sequence:

show sequence

GCGGGGAGGGAGGCGCGAAGAGGGCTCGAGGGTGGAAGCCGGAGGGAGCCGCCGCCCCTGGCCGCCCGGGTCCCCGGGGGGCGCATGGGGCGCTCCGAGCCGGGATCGCACGCGGGCCCCGCGCCCAG
CTTCCTGTTGCCGTGAGAAGCCGCACCGGGACGCCCCAGACCCTGAGGTGCCGGGAGGATGACCATGGCCGGGGGCAGGAAGGGACTGGTGGCCCCGCAGAACACATTTCTGGAGAATATTGTCCGGC
GGTCCAATGATACTAATTTCGTACTGGGGAATGCCCAGATAGTGGACTGGCCAATTGTGTACAGCAATGATGGATTTTGCAAGCTGTCTGGCTATCACAGGGCGGAAGTGATGCAAAAAAGCAGTACC
TGCAGTTTTATGTACGGGGAGCTGACTGATAAAGATACCATTGAAAAGGTGCGGCAAACATTTGAGAACTATGAGATGAACTCCTTTGAAATTTTGATGTACAAGAAGAACAGGACACCTGTGTGGTT
CTTTGTGAAAATTGCTCCAATTCGAAACGAACAGGATAAAGTGGTTTTATTTCTTTGCACTTTCAGTGACATAACAGCTTTCAAACAGCCAATTGAGGATGATTCATGTAAAGGCTGGGGGAAGTTTG
CTCGGCTGACCAGAGCACTGACAAGCAGCAGAGGGGTCCTGCAGCAGCTGGCTCCCAGCGTGCAGAAAGGCGAGAACGTCCACAAGCACTCCCGTCTGGCAGAGGTTCTGCAGCTGGGCTCGGACATT
CTTCCCCAATACAAGCAAGAGGCACCCAAGACTCCCCCTCACATCATCTTACACTACTGTGTCTTTAAGACCACGTGGGATTGGATCATCTTGATCTTAACCTTCTACACCGCCATCTTGGTCCCTTA
CAACGTCTCCTTTAAAACCAGGCAGAACAACGTGGCCTGGCTGGTTGTGGATAGCATCGTGGACGTCATCTTTTTGGTGGACATTGTGCTGAATTTTCATACCACCTTTGTTGGACCAGCTGGGGAGG
TGATTTCCGACCCCAAACTCATCCGCATGAACTACCTGAAGACGTGGTTTGTGATTGACCTTCTGTCCTGTTTGCCATATGATGTCATCAACGCTTTTGAGAACGTGGATGAGGGCATCAGCAGCCTC
TTCAGCTCTCTGAAAGTTGTCCGGCTGCTCCGTTTGGGGCGAGTGGCCCGGAAGCTGGACCACTACATCGAATACGGAGCAGCCGTGCTGGTCTTGCTAGTGTGTGTGTTCGGGCTGGCAGCTCACTG
GATGGCCTGCATTTGGTACAGCATCGGGGACTATGAGATCTTTGACGAGGACACCAAGACCATCCGTAACAACAGCTGGCTCTACCAGCTGGCGATGGACATTGGCACCCCTTACCAGTTTAACGGCT
CTGGCTCAGGGAAGTGGGAAGGGGGTCCCAGCAAGAATTCTGTCTACATCTCCTCGTTGTACTTCACCATGACCAGCCTCACCAGCGTGGGCTTTGGGAACATCGCCCCATCCACAGACATCGAGAAG
ATCTTCGCAGTGGCCATCATGATGATTGGCTCACTTCTTTATGCCACCATCTTCGGGAACGTGACGACCATTTTCCAACAGATGTACGCCAACACCAACAGGTACCATGAGATGCTCAACAGCGTCCG
GGACTTCCTGAAGCTCTACCAGGTGCCCAAGGGACTGAGCGAGCGAGTCATGGATTATATTGTCTCCACCTGGTCCATGTCCAGAGGCATTGACACGGAGAAGGTCCTGCAGATCTGCCCCAAGGACA
TGAGAGCTGACATCTGCGTGCACCTGAACCGCAAGGTGTTCAAGGAGCACCCGGCCTTTCGGCTGGCCAGCGACGGCTGCCTGCGGGCCCTGGCCATGGAGTTCCAGACGGTGCACTGCGCCCCCGGG
GACCTCATCTACCACGCGGGAGAGAGCGTCGACAGCCTCTGCTTTGTGGTCTCCGGCTCCCTGGAGGTGATCCAGGACGACGAGGTGGTGGCCATTCTAGGGAAAGGGGACGTGTTTGGAGACGTGTT
CTGGAAGGAAGCCACCCTTGCCCAGTCCTGTGCCAACGTGAGGGCCTTGACCTACTGTGACCTGCATGTGATCAAACGGGACGCCCTGCAGAAAGTGCTGGAATTCTACACGGCTTTCTCCCACTCCT
TCTCCCGGAACCTCATTCTCACCTACAACTTGAGGAAGAGGATCGTCTTCCGCAAGATCAGCGACGTGAAACGGGAGGAGGAGGAGCGCATGAAACGCAAGAACGAGGCCCCGCTCATCCTGCCCCCC
GACCACCCGGTCCGGCGGCTCTTCCAGAGGTTCCGACAGCAGAAGGAGGCCAGGCTGGCTGCGGAGCGGGGCGGCCGGGACCTGGACGACCTGGATGTGGAGAAGGGCAGTGTCCTGGCGGAGCACAG
CCACCACGGTCTGGGGAAGGCCAGCGTCGTCACGGTCCGCGAGAGCCCCGCCACGCCCGTCGCCTTCCCCGCGGCCGCCGCGGCCTCGGGGCTGGACNCACGCCCGGCTGCAGGCGCCCGGGGCCGGC
GGGGCGACGGCGCCAAGCGCAAGGGCTGGGCCCGCTTCAAGGACGCCGGCGGGAAGGCCGAGGACTGGAGCAAGGTGTCCAAGGCCGAGTCCATGGAGACCCTCCCCGAGAGGACAAAGGCCACCGGC
GAGGCCACCCTCAAGAAGACGGACTCGTGCGACAGTGGCATCACCAAGAGCGACCTGCGCCTGGACCACGTGGGCGAGGCCCGGAGCCCCCAGGACCGGAGCCCCGTCTTGGCGGAGGTCAAGCACGG
CTTCTACCCCATCCCCGAGCAGACGCTGCAGGCCACCGTCCTGGAGGTGAAACACGAGCTGAAGGAGGACATCAAGGCCTTAAACAGCAAAATGACCAACATTGAGAAGCAGCTCTCCGAGATCCTCA
GGATATTAACTGCCAGGAGGGCCTCCCAGTCGCCGCAGGAGCCCTTTGAGATATCGAGGCCCCAGTCCCCAGAGCAGGGAGAGACGTTTTTGGAGCCAGCTGAGAGGTCTGTGGACCAAAAAAAAAGA
GAGACAAAAACCTACCATCCTGCCCTAGACACCACCGCCACCACACACACCTACACGACCAGCCACATTCAAGGTGGGCTTTTCCCCGACGGAAAATCCACGTGGGACCAGTCACGCTTAGGCAAAGC
GCCCTCCTGTGCTCTCTCTGGGGAAAGATCCGGGCAGAGGTGTGCAAGACGGCAGCTGCATCTGAACTGTCTTTGCACAGTTTGGCAAGAGGGGACATGCTGTCTGAAGGGTATTGTCCTTCGTTTCT
AATTTTTTTACTGCCATGACGTTTGTAAAAGATGAAAACTACCAGGAAGCAACAGCAGCCGTTGGGGATTGTGTGTGGGGGCGGGGGGGGGGGGCGGGCACCAAGAACCCCTTATGTACATGCTTGGC
TCCTTTGCCAAGACCCTCGAAGACTGCTGTGGGCACAGGGAGCGCCCAGCATTCCCTGTCCCTGCCCAGCCTGTGTCTGATGTCACCGTGTATTTTCCTACCGTAGTCATTTGTAACAAGCCCGGGAC
AAGGGGAGCTTGAGGGACAGGGAGGGTCAAGCCGTTGGACTTTGTCTCTAATGGTTAAGGCCCCAAAGCAGCTGAGGTGCTTCCGTGCCTCCTGTAGACACTTACAGCCGGGGATCTTCAGGTCTCCT
TTCCCAGAAGAGAGGAGCTGCAGAGGGCCCGTGCACACGCAGAGATTCTCTGCACGTGGTCCCCAGCCCGCTCCTTTGGGACAGTGGAAGGGGAGGGGCCCTGGTGGCCCCGGATGCATCTCTGGCCT
GGCTCTGCGCCACTGGCCTCATGACACAGGCCCCTTTGCTTCTTTTCCTTCTCAACCTCTTCCCAAATGTTCCTGTGGCATTCCTCAGGGTACGGGGCATCGGCAGGAAGGGTGATGAGCCCAGATTT
GCTTCATTAGCAAAGCAGACACACACGTAACCTCAGAAAAATGATTGTAGCCAGTGCTATGTTTATGATTCTCATTGGGGTTGCCCTAGAGAAGTTTGTATTTTGTCCACTGCATGGGGTCATTACAG
GATACTCGGCAGCCATGCTTGGCCTTA

hide sequence


Protein RefSeqs	XP_020919535	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000041669
	ENSSSCP00000041669.2
	ENSSSCP00000076674.1
	ENSSSCP00000078328.1
	ENSSSCP00025042671.1
	ENSSSCP00025042724.1
	ENSSSCP00035012574.1
	ENSSSCP00055007887.1
	ENSSSCP00055007890.1
	ENSSSCP00065020074.1
	ENSSSCP00065020076.1
	ENSSSCP00070015420.1
	ENSSSCP00070015431.1
	ENSSSCP00070015445.1
	ENSSSCP00070015451.1
	ENSSSCP00070015453.1

RefSeq Acc Id:

XP_020919535 ⟸ XM_021063876

- UniProtKB:

A0A4X1TJX0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTMAGGRKGLVAPQNTFLENIVRRSNDTNFVLGNAQIVDWPIVYSNDGFCKLSGYHRAEVMQKSSTCSFMYGELTDKDTIEKVRQTFENYEMNSFEILMYKKNRTPVWFFVKIAPIRNEQDKVVLFLC
TFSDITAFKQPIEDDSCKGWGKFARLTRALTSSRGVLQQLAPSVQKGENVHKHSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNVSFKTRQNNVAWLVVDSI
VDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVIDLLSCLPYDVINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIGDYEIFDEDTK
TIRNNSWLYQLAMDIGTPYQFNGSGSGKWEGGPSKNSVYISSLYFTMTSLTSVGFGNIAPSTDIEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDY
IVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYC
DLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRIVFRKISDVKREEEERMKRKNEAPLILPPDHPVRRLFQRFRQQKEARLAAERGGRDLDDLDVEKGSVLAEHSHHGLGKASVVTVRESPATP
VAFPAAAAASGLDXRPAAGARGRRGDGAKRKGWARFKDAGGKAEDWSKVSKAESMETLPERTKATGEATLKKTDSCDSGITKSDLRLDHVGEARSPQDRSPVLAEVKHGFYPIPEQTLQATVLEVKHE
LKEDIKALNSKMTNIEKQLSEILRILTARRASQSPQEPFEISRPQSPEQGETFLEPAERSVDQKKRETKTYHPALDTTATTHTYTTSHIQGGLFPDGKSTWDQSRLGKAPSCALSGERSGQRCARRQL
HLNCLCTVWQEGTCCLKGIVLRF

hide sequence

Ensembl Acc Id:

ENSSSCP00000078328 ⟸ ENSSSCT00000102813

Ensembl Acc Id:

ENSSSCP00000041669 ⟸ ENSSSCT00000057669

Ensembl Acc Id:

ENSSSCP00000076674 ⟸ ENSSSCT00000106098

Protein Domains

Cyclic nucleotide-binding PAC PAS

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000040650	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025070584	UniProtKB/TrEMBL
	ENSSSCG00035024283	UniProtKB/TrEMBL
	ENSSSCG00055005027	UniProtKB/TrEMBL
	ENSSSCG00065034296	UniProtKB/TrEMBL
	ENSSSCG00070009550	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000057669	ENTREZGENE
	ENSSSCT00000057669.3	UniProtKB/TrEMBL
	ENSSSCT00000102813.1	UniProtKB/TrEMBL
	ENSSSCT00000106098.1	UniProtKB/TrEMBL
	ENSSSCT00025097186.1	UniProtKB/TrEMBL
	ENSSSCT00025097297.1	UniProtKB/TrEMBL
	ENSSSCT00035031974.1	UniProtKB/TrEMBL
	ENSSSCT00055009962.1	UniProtKB/TrEMBL
	ENSSSCT00055009969.1	UniProtKB/TrEMBL
	ENSSSCT00065046695.1	UniProtKB/TrEMBL
	ENSSSCT00065046699.1	UniProtKB/TrEMBL
	ENSSSCT00070018557.1	UniProtKB/TrEMBL
	ENSSSCT00070018569.1	UniProtKB/TrEMBL
	ENSSSCT00070018589.1	UniProtKB/TrEMBL
	ENSSSCT00070018597.1	UniProtKB/TrEMBL
	ENSSSCT00070018599.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1200.260	UniProtKB/TrEMBL
	1.10.287.70	UniProtKB/TrEMBL
	2.60.120.10	UniProtKB/TrEMBL
	PAS domain	UniProtKB/TrEMBL
InterPro	cNMP-bd-like	UniProtKB/TrEMBL
	cNMP-bd_dom	UniProtKB/TrEMBL
	Ion_trans_dom	UniProtKB/TrEMBL
	K_chnl_volt-dep_EAG	UniProtKB/TrEMBL
	K_chnl_volt-dep_EAG/ELK/ERG	UniProtKB/TrEMBL
	KCNH_channel	UniProtKB/TrEMBL
	PAC	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
	PAS-assoc_C	UniProtKB/TrEMBL
	PAS-like_dom_sf	UniProtKB/TrEMBL
	RmlC-like_jellyroll	UniProtKB/TrEMBL
NCBI Gene	KCNH1	ENTREZGENE
PANTHER	PTHR10217:SF530	UniProtKB/TrEMBL
	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	UniProtKB/TrEMBL
Pfam	cNMP_binding	UniProtKB/TrEMBL
	Ion_trans	UniProtKB/TrEMBL
	PAS_9	UniProtKB/TrEMBL
PRINTS	EAGCHANLFMLY	UniProtKB/TrEMBL
	EAGCHANNEL	UniProtKB/TrEMBL
PROSITE	CNMP_BINDING_3	UniProtKB/TrEMBL
	PAC	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
SMART	cNMP	UniProtKB/TrEMBL
	PAC	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51206	UniProtKB/TrEMBL
	SSF55785	UniProtKB/TrEMBL
	Voltage-gated potassium channels	UniProtKB/TrEMBL
UniProt	A0A287ACY3_PIG	UniProtKB/TrEMBL
	A0A4X1TFY4_PIG	UniProtKB/TrEMBL
	A0A4X1TFY6_PIG	UniProtKB/TrEMBL
	A0A4X1THS2_PIG	UniProtKB/TrEMBL
	A0A4X1TJS1_PIG	UniProtKB/TrEMBL
	A0A4X1TJX0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FBH5_PIG	UniProtKB/TrEMBL
	A0A8W4FJ44_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:108599	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM