KCNH1 (potassium voltage-gated channel subfamily H member 1) - Rat Genome Database

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Gene: KCNH1 (potassium voltage-gated channel subfamily H member 1) Sus scrofa
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Symbol: KCNH1
Name: potassium voltage-gated channel subfamily H member 1
RGD ID: 13972119
Description: ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); cyclic nucleotide binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); monoatomic ion transmembrane transport (ortholog); potassium ion transmembrane transport (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); colorectal adenocarcinoma (ortholog); Developmental Disease (ortholog); FOUND IN axolemma (ortholog); axon (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: potassium voltage-gated channel, subfamily H (eag-related), member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9131,960,480 - 132,334,953 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19131,960,566 - 132,336,029 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29145,245,936 - 145,368,735 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCNH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9131,960,480 - 132,334,953 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19131,960,566 - 132,336,029 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29145,245,936 - 145,368,735 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCNH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381210,678,314 - 211,134,148 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1210,676,823 - 211,134,165 (-)EnsemblGRCh38hg38GRCh38
GRCh371210,851,656 - 211,307,490 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361208,923,178 - 209,374,080 (-)NCBINCBI36Build 36hg18NCBI36
Build 341207,244,949 - 207,695,852NCBI
Celera1184,078,007 - 184,534,030 (-)NCBICelera
Cytogenetic Map1q32.2NCBI
HuRef1181,528,354 - 181,984,466 (-)NCBIHuRef
CHM1_11212,124,419 - 212,580,029 (-)NCBICHM1_1
T2T-CHM13v2.01209,920,145 - 210,379,828 (-)NCBIT2T-CHM13v2.0
Kcnh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391191,871,759 - 192,192,467 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1191,873,082 - 192,192,467 (+)EnsemblGRCm39 Ensembl
GRCm381192,189,144 - 192,510,159 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1192,190,774 - 192,510,159 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,014,754 - 194,334,040 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,891,596 - 194,210,882 (+)NCBIMGSCv36mm8
Celera1199,081,917 - 199,396,846 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.33NCBI
Kcnh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813106,253,101 - 106,555,712 (+)NCBIGRCr8
mRatBN7.213103,722,140 - 104,024,762 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13103,722,245 - 104,024,740 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13106,242,159 - 106,544,653 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013107,626,002 - 107,928,502 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013104,840,996 - 105,143,620 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013110,920,712 - 111,232,291 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13110,920,737 - 111,232,269 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013115,478,526 - 115,789,705 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413108,129,617 - 108,407,815 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113108,318,724 - 108,596,919 (+)NCBI
Celera13103,160,967 - 103,461,850 (+)NCBICelera
Cytogenetic Map13q27NCBI
Kcnh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554891,179,053 - 1,545,355 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554891,176,615 - 1,549,880 (+)NCBIChiLan1.0ChiLan1.0
KCNH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2138,274,955 - 38,737,394 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1138,239,979 - 38,703,633 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01186,233,881 - 186,696,509 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11191,102,299 - 191,561,879 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1191,107,256 - 191,562,766 (-)Ensemblpanpan1.1panPan2
KCNH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.179,317,804 - 9,631,144 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl79,252,488 - 9,631,150 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha78,829,600 - 9,206,958 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.078,949,600 - 9,333,811 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl78,954,637 - 9,334,074 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.178,881,430 - 9,257,585 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.078,973,450 - 9,359,036 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.079,110,853 - 9,483,089 (-)NCBIUU_Cfam_GSD_1.0
Kcnh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934464,893,289 - 65,249,587 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365572,133,564 - 2,493,155 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365572,133,596 - 2,493,170 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12518,353,356 - 18,788,472 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2518,353,482 - 18,783,592 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605518,890,057 - 19,338,331 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248071,056,313 - 1,388,491 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248071,019,347 - 1,392,433 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KCNH1
19760 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
5 2 22 3 4 4 4 22 2 3 1

Sequence


Ensembl Acc Id: ENSSSCT00000057669   ⟹   ENSSSCP00000041669
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9131,960,480 - 132,334,953 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000102813   ⟹   ENSSSCP00000078328
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9131,960,553 - 132,334,953 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000106098   ⟹   ENSSSCP00000076674
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9131,960,553 - 132,334,953 (+)Ensembl
RefSeq Acc Id: XM_021063876   ⟹   XP_020919535
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,960,566 - 132,336,029 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020919535   ⟸   XM_021063876
- UniProtKB: A0A4X1TJX0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000078328   ⟸   ENSSSCT00000102813
Ensembl Acc Id: ENSSSCP00000041669   ⟸   ENSSSCT00000057669
Ensembl Acc Id: ENSSSCP00000076674   ⟸   ENSSSCT00000106098
Protein Domains
Cyclic nucleotide-binding   PAC   PAS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040650 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025070584 UniProtKB/TrEMBL
  ENSSSCG00035024283 UniProtKB/TrEMBL
  ENSSSCG00055005027 UniProtKB/TrEMBL
  ENSSSCG00065034296 UniProtKB/TrEMBL
  ENSSSCG00070009550 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000057669 ENTREZGENE
  ENSSSCT00000057669.3 UniProtKB/TrEMBL
  ENSSSCT00000102813.1 UniProtKB/TrEMBL
  ENSSSCT00000106098.1 UniProtKB/TrEMBL
  ENSSSCT00025097186.1 UniProtKB/TrEMBL
  ENSSSCT00025097297.1 UniProtKB/TrEMBL
  ENSSSCT00035031974.1 UniProtKB/TrEMBL
  ENSSSCT00055009962.1 UniProtKB/TrEMBL
  ENSSSCT00055009969.1 UniProtKB/TrEMBL
  ENSSSCT00065046695.1 UniProtKB/TrEMBL
  ENSSSCT00065046699.1 UniProtKB/TrEMBL
  ENSSSCT00070018557.1 UniProtKB/TrEMBL
  ENSSSCT00070018569.1 UniProtKB/TrEMBL
  ENSSSCT00070018589.1 UniProtKB/TrEMBL
  ENSSSCT00070018597.1 UniProtKB/TrEMBL
  ENSSSCT00070018599.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.260 UniProtKB/TrEMBL
  1.10.287.70 UniProtKB/TrEMBL
  2.60.120.10 UniProtKB/TrEMBL
  PAS domain UniProtKB/TrEMBL
InterPro cNMP-bd-like UniProtKB/TrEMBL
  cNMP-bd_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  K_chnl_volt-dep_EAG UniProtKB/TrEMBL
  K_chnl_volt-dep_EAG/ELK/ERG UniProtKB/TrEMBL
  KCNH_channel UniProtKB/TrEMBL
  PAC UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS-assoc_C UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
NCBI Gene KCNH1 ENTREZGENE
PANTHER PTHR10217:SF530 UniProtKB/TrEMBL
  VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL UniProtKB/TrEMBL
Pfam cNMP_binding UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  PAS_9 UniProtKB/TrEMBL
PRINTS EAGCHANLFMLY UniProtKB/TrEMBL
  EAGCHANNEL UniProtKB/TrEMBL
PROSITE CNMP_BINDING_3 UniProtKB/TrEMBL
  PAC UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
SMART cNMP UniProtKB/TrEMBL
  PAC UniProtKB/TrEMBL
Superfamily-SCOP SSF51206 UniProtKB/TrEMBL
  SSF55785 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A287ACY3_PIG UniProtKB/TrEMBL
  A0A4X1TFY4_PIG UniProtKB/TrEMBL
  A0A4X1TFY6_PIG UniProtKB/TrEMBL
  A0A4X1THS2_PIG UniProtKB/TrEMBL
  A0A4X1TJS1_PIG UniProtKB/TrEMBL
  A0A4X1TJX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FBH5_PIG UniProtKB/TrEMBL
  A0A8W4FJ44_PIG UniProtKB/TrEMBL
VGNC ID VGNC:108599 ENTREZGENE