APBA1 (amyloid beta precursor protein binding family A member 1) - Rat Genome Database

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Gene: APBA1 (amyloid beta precursor protein binding family A member 1) Sus scrofa
Analyze
Symbol: APBA1
Name: amyloid beta precursor protein binding family A member 1 (Ensembl:amyloid beta protein binding family A member 1)
RGD ID: 13900750
Description: ENCODES a protein that exhibits amyloid-beta binding (ortholog); PDZ domain binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); establishment of localization in cell (ortholog); gamma-aminobutyric acid secretion (ortholog); FOUND IN dendritic spine (ortholog); glutamatergic synapse (ortholog); presynaptic active zone membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: amyloid beta A4 precursor protein-binding family A member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,758,509 - 222,990,335 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,758,508 - 222,990,000 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,028,220 - 249,062,572 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
APBA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,758,509 - 222,990,335 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,758,508 - 222,990,000 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,028,220 - 249,062,572 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APBA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38969,427,532 - 69,673,013 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl969,427,532 - 69,672,371 (-)EnsemblGRCh38hg38GRCh38
GRCh37972,042,448 - 72,287,287 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36971,235,022 - 71,477,042 (-)NCBINCBI36Build 36hg18NCBI36
Build 34969,274,755 - 69,516,776NCBI
Celera942,632,969 - 42,877,657 (-)NCBICelera
Cytogenetic Map9q21.12NCBI
HuRef941,881,637 - 42,126,250 (-)NCBIHuRef
CHM1_1972,188,922 - 72,433,742 (-)NCBICHM1_1
T2T-CHM13v2.0981,594,168 - 81,839,634 (-)NCBIT2T-CHM13v2.0
Apba1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391923,736,170 - 23,926,961 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1923,736,251 - 23,926,960 (+)EnsemblGRCm39 Ensembl
GRCm381923,758,806 - 23,949,598 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1923,758,887 - 23,949,596 (+)EnsemblGRCm38mm10GRCm38
MGSCv371923,833,366 - 24,024,087 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361923,825,973 - 24,016,694 (+)NCBIMGSCv36mm8
Celera1924,515,896 - 24,708,645 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1918.45NCBI
Apba1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81230,790,297 - 230,995,986 (+)NCBIGRCr8
mRatBN7.21221,363,769 - 221,569,496 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,363,778 - 221,566,553 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1229,804,697 - 230,010,786 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,734,753 - 236,940,843 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01229,552,787 - 229,758,875 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01241,594,565 - 241,796,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1241,594,565 - 241,796,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,875,910 - 249,079,588 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,106,828 - 227,309,416 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,270,850 - 227,473,431 (+)NCBI
Celera1218,575,430 - 218,778,639 (+)NCBICelera
Cytogenetic Map1q51NCBI
Apba1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554343,519,314 - 3,588,829 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554343,384,978 - 3,588,771 (+)NCBIChiLan1.0ChiLan1.0
APBA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21168,636,321 - 68,877,849 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1968,642,260 - 68,883,788 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0955,124,040 - 55,365,521 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1968,191,877 - 68,435,013 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl968,191,877 - 68,275,554 (-)Ensemblpanpan1.1panPan2
APBA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1187,787,039 - 87,980,204 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl187,786,836 - 87,980,194 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha188,255,280 - 88,452,053 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0188,335,484 - 88,532,249 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl188,335,277 - 88,532,244 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1187,990,598 - 88,187,087 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0187,697,128 - 87,893,940 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0188,460,793 - 88,657,815 (+)NCBIUU_Cfam_GSD_1.0
Apba1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947135,402,119 - 135,473,424 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365035,699,558 - 5,771,030 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365035,699,580 - 5,770,920 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APBA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11280,506,807 - 80,733,095 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1280,506,776 - 80,577,500 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603868,922,453 - 69,148,957 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apba1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247363,565,299 - 3,635,775 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247363,404,915 - 3,637,346 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in APBA1
5179 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000005785   ⟹   ENSSSCP00000005642
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1222,758,510 - 222,990,335 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000025216   ⟹   ENSSSCP00000019515
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1222,758,510 - 222,990,335 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000071169   ⟹   ENSSSCP00000071671
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1222,758,509 - 222,989,896 (-)Ensembl
RefSeq Acc Id: XM_021064677   ⟹   XP_020920336
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11222,758,508 - 222,989,998 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064683   ⟹   XP_020920342
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11222,758,515 - 222,840,664 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064688   ⟹   XP_020920347
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11222,758,515 - 222,990,000 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064697   ⟹   XP_020920356
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11222,758,513 - 222,990,000 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064701   ⟹   XP_020920360
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11222,758,515 - 222,989,963 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020920336   ⟸   XM_021064677
- Peptide Label: isoform X1
- UniProtKB: F1SJD2 (UniProtKB/TrEMBL),   A0A8D0LV52 (UniProtKB/TrEMBL),   A0A8D0VRN8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920356   ⟸   XM_021064697
- Peptide Label: isoform X2
- UniProtKB: A0A8D0LW36 (UniProtKB/TrEMBL),   A0A8D1PDP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920347   ⟸   XM_021064688
- Peptide Label: isoform X1
- UniProtKB: F1SJD2 (UniProtKB/TrEMBL),   A0A8D0LV52 (UniProtKB/TrEMBL),   A0A8D0VRN8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920360   ⟸   XM_021064701
- Peptide Label: isoform X2
- UniProtKB: A0A8D0LW36 (UniProtKB/TrEMBL),   A0A8D1PDP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920342   ⟸   XM_021064683
- Peptide Label: isoform X1
- UniProtKB: F1SJD2 (UniProtKB/TrEMBL),   A0A8D0LV52 (UniProtKB/TrEMBL),   A0A8D0VRN8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000005642   ⟸   ENSSSCT00000005785
Ensembl Acc Id: ENSSSCP00000019515   ⟸   ENSSSCT00000025216
Ensembl Acc Id: ENSSSCP00000071671   ⟸   ENSSSCT00000071169
Protein Domains
PDZ   PID


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005250 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015020959 UniProtKB/TrEMBL
  ENSSSCG00025027825 UniProtKB/TrEMBL
  ENSSSCG00030015925 UniProtKB/TrEMBL
  ENSSSCG00035062390 UniProtKB/TrEMBL
  ENSSSCG00040050546 UniProtKB/TrEMBL
  ENSSSCG00045037453 UniProtKB/TrEMBL
  ENSSSCG00050077520 UniProtKB/TrEMBL
  ENSSSCG00055001988 UniProtKB/TrEMBL
  ENSSSCG00060042727 UniProtKB/TrEMBL
  ENSSSCG00065024247 UniProtKB/TrEMBL
  ENSSSCG00070028694 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005785 ENTREZGENE
  ENSSSCT00000005785.4 UniProtKB/TrEMBL
  ENSSSCT00000025216.3 UniProtKB/TrEMBL
  ENSSSCT00000071169 ENTREZGENE
  ENSSSCT00000071169.2 UniProtKB/TrEMBL
  ENSSSCT00015027875.1 UniProtKB/TrEMBL
  ENSSSCT00025037721.1 UniProtKB/TrEMBL
  ENSSSCT00030022066.1 UniProtKB/TrEMBL
  ENSSSCT00035083846.1 UniProtKB/TrEMBL
  ENSSSCT00040068679.1 UniProtKB/TrEMBL
  ENSSSCT00045064630.1 UniProtKB/TrEMBL
  ENSSSCT00050106748.1 UniProtKB/TrEMBL
  ENSSSCT00055003765.1 UniProtKB/TrEMBL
  ENSSSCT00060057943.1 UniProtKB/TrEMBL
  ENSSSCT00065032328.1 UniProtKB/TrEMBL
  ENSSSCT00070057592.1 UniProtKB/TrEMBL
  ENSSSCT00070057596.1 UniProtKB/TrEMBL
  ENSSSCT00070057603.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
InterPro APP-Binding UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/TrEMBL
NCBI Gene APBA1 ENTREZGENE
PANTHER PTHR12345:SF14 UniProtKB/TrEMBL
  SYNTENIN RELATED UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
  PID UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
  PID UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
  PTB UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
UniProt A0A4X1VYP5_PIG UniProtKB/TrEMBL
  A0A4X1VYP9_PIG UniProtKB/TrEMBL
  A0A4X1W5V9_PIG UniProtKB/TrEMBL
  A0A5G2R3K9_PIG UniProtKB/TrEMBL
  A0A8D0LV52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LW36 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VRN8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PDP3 ENTREZGENE, UniProtKB/TrEMBL
  F1SJD2 ENTREZGENE
  I3L664_PIG UniProtKB/TrEMBL
UniProt Secondary F1SJD2 UniProtKB/TrEMBL
VGNC ID VGNC:85399 ENTREZGENE