PRMT5 (protein arginine methyltransferase 5) - Rat Genome Database

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Gene: PRMT5 (protein arginine methyltransferase 5) Homo sapiens
Analyze
Symbol: PRMT5
Name: protein arginine methyltransferase 5
RGD ID: 1319178
HGNC Page HGNC:10894
Description: Enables several functions, including methyl-CpG binding activity; p53 binding activity; and protein-arginine N-methyltransferase activity. Involved in several processes, including Golgi ribbon formation; RNA metabolic process; and positive regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway. Acts upstream of or within peptidyl-arginine N-methylation. Located in several cellular components, including Golgi apparatus; chromatin; and nucleoplasm. Part of histone methyltransferase complex and methylosome. Biomarker of Leydig cell tumor and seminoma.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 72 kDa ICln-binding protein; histone-arginine N-methyltransferase PRMT5; HMT1 hnRNP methyltransferase-like 5; HMT1 hnRNP methyltransferase-like 5 (S. cerevisiae); HRMT1L5; HSL7; IBP72; jak-binding protein 1; JBP1; protein arginine N-methyltransferase 5; shk1 kinase-binding protein 1 homolog; SKB1; SKB1 homolog; skb1 homolog (s. pombe); SKB1Hs
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: PRMT5P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,920,529 - 22,929,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,920,525 - 22,929,408 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,389,738 - 23,398,585 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,459,573 - 22,468,501 (-)NCBINCBI36Build 36hg18NCBI36
Build 341422,459,578 - 22,468,501NCBI
Celera143,252,630 - 3,261,553 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,506,765 - 3,515,687 (-)NCBIHuRef
CHM1_11423,388,351 - 23,397,277 (-)NCBICHM1_1
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
PRMT5Humanasthma  ISOPrmt5 (Rattus norvegicus)9491823mRNA:increased expression:lung and spleenRGD 
PRMT5HumanLeydig cell tumor  IEP 2299953protein:altered localizationRGD 
PRMT5Humanseminoma  IEP 2299953protein:altered localizationRGD 
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Original Reference(s)
PRMT5HumanBrain-Lung-Thyroid Syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Brain-lung-thyroid syndromeClinVarPMID:25741868
PRMT5Humanlysinuric protein intolerance  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Lysinuric protein intoleranceClinVarPMID:28492532
PRMT5HumanSpecific Granule Deficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Specific granule deficiencyClinVarPMID:28492532
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Original Reference(s)
PRMT5Humandiffuse large B-cell lymphoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:31123343
PRMT5Humanmedulloblastoma  EXP 11554173CTD Direct Evidence: therapeuticCTDPMID:31694585
PRMT5Humanmultiple myeloma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:29158558
PRMT5HumanTriple Negative Breast Neoplasms  EXP 11554173CTD Direct Evidence: therapeuticCTDPMID:30957988
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PRMT5Humanidiopathic scoliosis  ISSPrmt5 (Mus musculus)13592920 MouseDO 

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Original Reference(s)
PRMT5Human(1->4)-beta-D-glucan multiple interactionsISOPrmt5 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of PRMT5 mRNACTDPMID:36331819
PRMT5Human1,2-dimethylhydrazine multiple interactionsISOPrmt5 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of PRMT5 mRNA]CTDPMID:22206623
PRMT5Human1,2-dimethylhydrazine increases expressionISOPrmt5 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of PRMT5 mRNACTDPMID:22206623
PRMT5Human2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOPrmt5 (Mus musculus)64804642 more ...CTDPMID:30294300
PRMT5Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPrmt5 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PRMT5 mRNACTDPMID:21570461
PRMT5Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOPrmt5 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of PRMT5 mRNACTDPMID:33387578
PRMT5Human2,4,6-tribromophenol increases expressionEXP 64804642 more ...CTDPMID:31675489
PRMT5Human2,4-dinitrotoluene affects expressionISOPrmt5 (Rattus norvegicus)64804642 and 4-dinitrotoluene affects the expression of PRMT5 mRNACTDPMID:21346803
PRMT5Human2,6-dimethoxyphenol multiple interactionsEXP 6480464[Furaldehyde co-treated with pyrogallol 1 more ...CTDPMID:38598786
PRMT5Human2,6-dinitrotoluene affects expressionISOPrmt5 (Rattus norvegicus)64804642 and 6-dinitrotoluene affects the expression of PRMT5 mRNACTDPMID:21346803
PRMT5Human2-hydroxypropanoic acid decreases expressionEXP 6480464Lactic Acid results in decreased expression of PRMT5 mRNACTDPMID:30851411
PRMT5Human2-methylcholine affects expressionEXP 6480464beta-methylcholine affects the expression of PRMT5 mRNACTDPMID:21179406
PRMT5Human3,4-methylenedioxymethamphetamine increases expressionISOPrmt5 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of PRMT5 mRNACTDPMID:20188158
PRMT5Human4,4'-diaminodiphenylmethane increases expressionISOPrmt5 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of PRMT5 mRNACTDPMID:18648102
PRMT5Human4-amino-2,6-dinitrotoluene affects expressionISOPrmt5 (Rattus norvegicus)64804644-amino-2 and 6-dinitrotoluene affects the expression of PRMT5 mRNACTDPMID:21346803
PRMT5Humanacrolein multiple interactionsEXP 6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of PRMT5 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of PRMT5 mRNACTDPMID:32699268
PRMT5Humanacrylamide increases expressionISOPrmt5 (Rattus norvegicus)6480464Acrylamide results in increased expression of PRMT5 mRNACTDPMID:28959563
PRMT5Humanactinomycin D multiple interactionsEXP 6480464[Dactinomycin co-treated with nutlin 3] results in increased secretion of PRMT5 proteinCTDPMID:38460933
PRMT5Humanaflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of PRMT5 mRNA and Aflatoxin B1 results in increased expression of PRMT5 proteinCTDPMID:27242039
PRMT5Humanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of PRMT5 geneCTDPMID:27153756

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Biological Process
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Original Reference(s)
PRMT5Humanchromatin organization involved_inIEAUniProtKB-KW:KW-0156150520179 UniProtGO_REF:0000043
PRMT5Humanchromatin remodeling involved_inIDA 150520179 PMID:18404153UniProtPMID:18404153
PRMT5Humancircadian regulation of gene expression involved_inISSUniProtKB:Q8CIG8150520179 UniProtGO_REF:0000024
PRMT5HumanDNA-templated transcription termination involved_inIMP 150520179 PMID:26700805UniProtPMID:26700805
PRMT5Humanendothelial cell activation involved_inIMP 150520179 PMID:22269951UniProtPMID:22269951
PRMT5Humangene expression involved_inISOPrmt5 (Mus musculus)9068941 PMID:16699504MGIPMID:16699504
PRMT5HumanGolgi ribbon formation involved_inIMP 150520179 PMID:20421892UniProtPMID:20421892
PRMT5Humanliver regeneration  ISOPrmt5 (Rattus norvegicus)9068941 RGDPMID:15837430 and REF_RGD_ID:2299961
PRMT5Humanliver regeneration involved_inIEAUniProtKB:D4A0E8 and ensembl:ENSRNOP00000016302150520179 EnsemblGO_REF:0000107
PRMT5Humanmethylation involved_inIEAUniProtKB-KW:KW-0489150520179 UniProtGO_REF:0000043
PRMT5Humannegative regulation of cell differentiation  ISOPrmt5 (Rattus norvegicus)9068941 RGDPMID:21917714 and REF_RGD_ID:9491825
PRMT5Humannegative regulation of cell differentiation involved_inIEAUniProtKB:D4A0E8 and ensembl:ENSRNOP00000016302150520179 EnsemblGO_REF:0000107
PRMT5Humannegative regulation of DNA-templated transcription involved_inIEAGO:0003714150520179 GOCGO_REF:0000108
PRMT5Humannegative regulation of gene expression via chromosomal CpG island methylation  ISOPrmt5 (Rattus norvegicus)9068941 RGDPMID:22041901 and REF_RGD_ID:9491827
PRMT5Humannegative regulation of gene expression via chromosomal CpG island methylation involved_inIEAUniProtKB:D4A0E8 and ensembl:ENSRNOP00000016302150520179 EnsemblGO_REF:0000107
PRMT5Humannegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISOPrmt5 (Mus musculus)9068941 PMID:18347060MGIPMID:18347060
PRMT5Humanpeptidyl-arginine methylation involved_inIMP 150520179 PMID:17709427UniProtPMID:17709427
PRMT5Humanpeptidyl-arginine N-methylation acts_upstream_of_or_withinIDA 150520179 PMID:15369763MGIPMID:15369763
PRMT5Humanpositive regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway involved_inIGIUniProtKB:P14416150520179 PMID:26554819WBPMID:26554819
PRMT5Humanpositive regulation of mRNA splicing, via spliceosome involved_inNAS 150520179 PMID:11756452ComplexPortalPMID:11756452
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Cellular Component
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Original Reference(s)
PRMT5Humanchromatin located_inIDA 150520179 PMID:33376131UniProtPMID:33376131
PRMT5Humanchromosome located_inIEAUniProtKB-KW:KW-0158150520179 UniProtGO_REF:0000043
PRMT5Humanchromosome located_inIEAUniProtKB-SubCell:SL-0468150520179 UniProtGO_REF:0000044
PRMT5Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
PRMT5Humancytoplasm part_ofIDA 150520179 PMID:22952863CACAOPMID:22952863
PRMT5Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
PRMT5Humancytosol located_inTAS 150520179 ReactomeReactome:R-HSA-191790
PRMT5Humancytosol located_inIDA 150520179 PMID:18984161 and PMID:21081503HPAGO_REF:0000052 more ...
PRMT5Humancytosol located_inIEAUniRule:UR000128653150520179 UniProtGO_REF:0000104
PRMT5Humancytosol is_active_inIBAPANTHER:PTN000077429 and UniProtKB:O14744150520179 GO_CentralGO_REF:0000033
PRMT5HumanGolgi apparatus located_inIEAUniProtKB-KW:KW-0333150520179 UniProtGO_REF:0000043
PRMT5HumanGolgi apparatus located_inIEAUniProtKB-SubCell:SL-0132150520179 UniProtGO_REF:0000044
PRMT5HumanGolgi apparatus located_inIDA 150520179 PMID:20421892UniProtPMID:20421892
PRMT5Humanhistone methyltransferase complex part_ofIDA 150520179 PMID:23048031ParkinsonsUK-UCLPMID:23048031
PRMT5Humanmale germ cell nucleus located_inISOPrmt5 (Mus musculus)9068941 PMID:16787967MGIPMID:16787967
PRMT5Humanmethylosome part_ofIDA 150520179 PMID:11756452 more ...UniProtPMID:11756452 more ...
PRMT5Humannucleoplasm located_inTAS 150520179 ReactomeReactome:R-HSA-3215385 more ...
PRMT5Humannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
PRMT5Humannucleus located_inIDA 150520179 PMID:21081503UniProtPMID:21081503
PRMT5Humannucleus is_active_inIBAMGI:1351645 more ...150520179 GO_CentralGO_REF:0000033
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Molecular Function
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PRMT5Humanchromatin binding enablesISOPrmt5 (Mus musculus)9068941 PMID:18347060MGIPMID:18347060
PRMT5HumanE-box binding enablesISSUniProtKB:Q8CIG8150520179 UniProtGO_REF:0000024
PRMT5Humanhistone arginine N-methyltransferase activity enablesIBAPANTHER:PTN000077429 and WB:WBGene00016408150520179 GO_CentralGO_REF:0000033
PRMT5Humanhistone H2AR3 methyltransferase activity enablesISOPrmt5 (Mus musculus)9068941 PMID:16699504MGIPMID:16699504
PRMT5Humanhistone H3 methyltransferase activity enablesTAS 150520179 ReactomeReactome:R-HSA-5205799 and Reactome:R-HSA-5661117
PRMT5Humanhistone H4R3 methyltransferase activity enablesIDA 150520179 PMID:18404153 and PMID:22143770UniProtPMID:18404153 and PMID:22143770
PRMT5Humanhistone H4R3 methyltransferase activity enablesISSUniProtKB:Q8CIG8150520179 UniProtGO_REF:0000024
PRMT5Humanhistone H4R3 methyltransferase activity enablesIMP 150520179 PMID:25284789UniProtPMID:25284789
PRMT5Humanhistone methyltransferase activity enablesTAS 150520179 ReactomeReactome:R-HSA-5205861 and Reactome:R-HSA-5216234
PRMT5Humanidentical protein binding enablesIPIUniProtKB:O14744150520179 PMID:11756452 more ...IntActPMID:11756452 more ...
PRMT5Humanmethyl-CpG binding enablesIDA 150520179 PMID:25284789UniProtPMID:25284789
PRMT5Humanmethyltransferase activity enablesIEAUniProtKB-KW:KW-0489150520179 UniProtGO_REF:0000043
PRMT5Humanmethyltransferase activity enablesIEAInterPro:IPR007857150520179 InterProGO_REF:0000002
PRMT5Humanmethyltransferase activity enablesIEAARBA:ARBA00028302150520179 UniProtGO_REF:0000117
PRMT5Humanmethyltransferase activity enablesIDA 150520179 PMID:15369763 and PMID:19011621MGIPMID:15369763 and PMID:19011621
PRMT5Humanp53 binding enablesIPIUniProtKB:P04637150520179 PMID:19011621UniProtPMID:19011621
PRMT5Humanprotein binding enablesIPIUniProtKB:P46783150520179 PMID:20159986UniProtPMID:20159986
PRMT5Humanprotein binding enablesIPIUniProtKB:Q99LG4150520179 PMID:19011621UniProtPMID:19011621
PRMT5Humanprotein binding enablesIPIUniProtKB:Q9BRS2150520179 PMID:21081503 more ...IntActPMID:21081503 more ...
PRMT5Humanprotein binding enablesIPIUniProtKB:Q6ZV65 and UniProtKB:Q6ZV65-2150520179 PMID:33376131IntActPMID:33376131
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RGD Manual Annotations


  
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Original Reference(s)
PRMT5Humanhistone modification pathway   TAS 9479047 RGD 
PRMT5Humanhomocysteine metabolic pathway   TAS 1359044 RGD 
PRMT5Humanmethionine cycle/metabolic pathway   TAS 1359044 RGD 
PRMT5Humanmethionine cycle/metabolic pathway   TAS 7242552 RGD 

Imported Annotations - PID (archival)

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Original Reference(s)
PRMT5Humanp53 signaling pathway   EXP 6484113 PIDPID:200206

#
Reference Title
Reference Citation
1. Arginine methylation an emerging regulator of protein function. Bedford MT and Richard S, Mol Cell 2005 Apr 29;18(3):263-72.
2. Histone arginine methylation. Di Lorenzo A and Bedford MT, FEBS Lett. 2011 Jul 7;585(13):2024-31. doi: 10.1016/j.febslet.2010.11.010. Epub 2010 Nov 11.
3. Readers of histone methylarginine marks. Gayatri S and Bedford MT, Biochim Biophys Acta. 2014 Aug;1839(8):702-710. doi: 10.1016/j.bbagrm.2014.02.015. Epub 2014 Feb 28.
4. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
5. The expression and function of androgen receptor coactivator p44 and protein arginine methyltransferase 5 in the developing testis and testicular tumors. Liang JJ, etal., J Urol. 2007 May;177(5):1918-22.
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. [Expression of protein arginine N-methyltransferases in E3 rat models of acute asthma]. Sun QZ, etal., Nan Fang Yi Ke Da Xue Xue Bao. 2010 Apr;30(4):716-9.
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PMID:9556550   PMID:9843966   PMID:10531356   PMID:10734105   PMID:11152681   PMID:11713266   PMID:11720283   PMID:11747828   PMID:11756452   PMID:12101096   PMID:12358155   PMID:12477932  
PMID:12577067   PMID:12665801   PMID:12718890   PMID:12972618   PMID:14559996   PMID:14583623   PMID:14702039   PMID:15130578   PMID:15324660   PMID:15369763   PMID:15485929   PMID:15489334  
PMID:15654770   PMID:15670829   PMID:15701830   PMID:15737618   PMID:16087681   PMID:16169070   PMID:16300736   PMID:16428440   PMID:16699504   PMID:16712789   PMID:16969126   PMID:16980624  
PMID:17409432   PMID:17573539   PMID:17620599   PMID:17627275   PMID:17643375   PMID:17707232   PMID:17709427   PMID:17925232   PMID:17974993   PMID:18029348   PMID:18347060   PMID:18404153  
PMID:18495660   PMID:18562274   PMID:18694959   PMID:18984161   PMID:18992153   PMID:19011621   PMID:19032343   PMID:19086919   PMID:19167051   PMID:19188441   PMID:19234465   PMID:19380743  
PMID:19520849   PMID:19738201   PMID:19741270   PMID:20133701   PMID:20159986   PMID:20195544   PMID:20360068   PMID:20421892   PMID:20473970   PMID:20495075   PMID:20810653   PMID:20811636  
PMID:20951943   PMID:21081503   PMID:21081666   PMID:21118156   PMID:21145461   PMID:21159818   PMID:21262773   PMID:21316606   PMID:21385873   PMID:21592330   PMID:21700716   PMID:21873635  
PMID:21907836   PMID:21917714   PMID:21951318   PMID:21975038   PMID:22143770   PMID:22169276   PMID:22179613   PMID:22193545   PMID:22199349   PMID:22231400   PMID:22266372   PMID:22268729  
PMID:22269951   PMID:22327218   PMID:22354994   PMID:22365833   PMID:22586326   PMID:22689669   PMID:22708516   PMID:22726390   PMID:22733990   PMID:22863883   PMID:22939629   PMID:22952863  
PMID:23048031   PMID:23071334   PMID:23084401   PMID:23133559   PMID:23184937   PMID:23246001   PMID:23261437   PMID:23292799   PMID:23398456   PMID:23455922   PMID:23455924   PMID:23569248  
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PRMT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,920,529 - 22,929,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,920,525 - 22,929,408 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,389,738 - 23,398,585 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,459,573 - 22,468,501 (-)NCBINCBI36Build 36hg18NCBI36
Build 341422,459,578 - 22,468,501NCBI
Celera143,252,630 - 3,261,553 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,506,765 - 3,515,687 (-)NCBIHuRef
CHM1_11423,388,351 - 23,397,277 (-)NCBICHM1_1
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBIT2T-CHM13v2.0
Prmt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,744,639 - 54,754,927 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,744,644 - 54,754,982 (-)EnsemblGRCm39 Ensembl
GRCm381454,507,182 - 54,517,470 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,507,187 - 54,517,525 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,126,019 - 55,136,307 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,461,664 - 53,471,620 (-)NCBIMGSCv36mm8
Celera1452,302,644 - 52,312,943 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.82NCBI
Prmt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81531,938,927 - 31,948,318 (-)NCBIGRCr8
mRatBN7.21527,968,893 - 27,978,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1527,968,910 - 27,978,296 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,808,255 - 29,817,654 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01530,955,476 - 30,964,875 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,205,536 - 29,214,734 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,156,508 - 33,165,893 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,156,492 - 33,165,895 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,041,740 - 37,051,125 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,574,951 - 32,584,336 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,590,652 - 32,600,343 (-)NCBI
Celera1527,551,512 - 27,560,897 (-)NCBICelera
Cytogenetic Map15p13NCBI
Prmt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,369,234 - 37,378,093 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,369,507 - 37,378,034 (+)NCBIChiLan1.0ChiLan1.0
PRMT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,350,371 - 24,359,212 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,566,859 - 23,576,070 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,737,741 - 3,746,646 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,836,984 - 21,846,018 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,836,984 - 21,846,018 (-)Ensemblpanpan1.1panPan2
PRMT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,248,349 - 3,257,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,248,404 - 3,257,456 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,196,693 - 3,205,933 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,356,162 - 3,365,422 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,356,165 - 3,365,310 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,047,415 - 3,056,657 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,108,945 - 3,118,202 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,371,200 - 3,380,454 (-)NCBIUU_Cfam_GSD_1.0
Prmt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,000,952 - 35,009,330 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,379,515 - 1,388,546 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,379,515 - 1,388,538 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRMT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl776,110,951 - 76,124,989 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1776,110,956 - 76,119,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PRMT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,288,458 - 23,297,746 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,288,835 - 23,297,518 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605923,123,104 - 23,132,411 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prmt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,599,734 - 9,608,703 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,599,867 - 9,608,578 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in PRMT5
30 total Variants

1 to 10 of 60 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 14q11.2(chr14:20151149-23442195)x3 copy number gain See cases [RCV000050914] Chr14:20151149..23442195 [GRCh38]
Chr14:20619308..23911404 [GRCh37]
Chr14:19689148..22981244 [NCBI36]
Chr14:14q11.2
pathogenic
GRCh38/hg38 14q11.2-12(chr14:20151149-27723796)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051484]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051484]|See cases [RCV000051484] Chr14:20151149..27723796 [GRCh38]
Chr14:20619308..28193002 [GRCh37]
Chr14:19689148..27262842 [NCBI36]
Chr14:14q11.2-12
pathogenic
GRCh38/hg38 14q11.2-21.2(chr14:20196945-45284802)x1 copy number loss See cases [RCV000051485] Chr14:20196945..45284802 [GRCh38]
Chr14:20665104..45754005 [GRCh37]
Chr14:19734944..44823755 [NCBI36]
Chr14:14q11.2-21.2
pathogenic
GRCh38/hg38 14q11.2-21.1(chr14:20000611-38984415)x3 copy number gain See cases [RCV000053803] Chr14:20000611..38984415 [GRCh38]
Chr14:20468770..39453619 [GRCh37]
Chr14:19538610..38523370 [NCBI36]
Chr14:14q11.2-21.1
pathogenic
GRCh38/hg38 14q11.2-21.1(chr14:20150949-39746154)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053806]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053806]|See cases [RCV000053806] Chr14:20150949..39746154 [GRCh38]
Chr14:20619108..40215358 [GRCh37]
Chr14:19688948..39285109 [NCBI36]
Chr14:14q11.2-21.1
pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3 copy number gain See cases [RCV000135543] Chr14:20151149..106855263 [GRCh38]
Chr14:20619308..107263478 [GRCh37]
Chr14:19689148..106334523 [NCBI36]
Chr14:14q11.2-32.33
pathogenic
GRCh38/hg38 14q11.2-12(chr14:20412587-25018120)x3 copy number gain See cases [RCV000137725] Chr14:20412587..25018120 [GRCh38]
Chr14:20880746..25487326 [GRCh37]
Chr14:19950586..24557166 [NCBI36]
Chr14:14q11.2-12
likely pathogenic
GRCh38/hg38 14q11.2(chr14:21010790-22951814)x3 copy number gain See cases [RCV000140829] Chr14:21010790..22951814 [GRCh38]
Chr14:21478949..23421023 [GRCh37]
Chr14:20548789..22490863 [NCBI36]
Chr14:14q11.2
uncertain significance
GRCh38/hg38 14q11.2-32.33(chr14:20043514-106877229)x3 copy number gain See cases [RCV000143373] Chr14:20043514..106877229 [GRCh38]
Chr14:20511673..107285437 [GRCh37]
Chr14:19581513..106356482 [NCBI36]
Chr14:14q11.2-32.33
pathogenic
GRCh38/hg38 14q11.2-21.2(chr14:20022693-44093672)x3 copy number gain See cases [RCV000143186] Chr14:20022693..44093672 [GRCh38]
Chr14:20490852..44562875 [GRCh37]
Chr14:19560692..43632625 [NCBI36]
Chr14:14q11.2-21.2
pathogenic
1 to 10 of 60 rows

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR19Ahsa-miR-19a-3pMirtarbaseexternal_infoWestern blotFunctional MTI18694959
MIR25hsa-miR-25-3pMirtarbaseexternal_infoWestern blotFunctional MTI18694959
MIR18Ahsa-miR-18a-5pMirtarbaseexternal_infoimmunohistochemistry//Microarray//qRT-PCR//WesternFunctional MTI19167416
MIR96hsa-miR-96-5pMirtarbaseexternal_infoWestern blotFunctional MTI18694959
MIR32hsa-miR-32-5pMirtarbaseexternal_infoWestern blotFunctional MTI18694959
MIR92Bhsa-miR-92b-3pMirtarbaseexternal_infoWestern blotFunctional MTI18694959

Predicted Target Of
Summary Value
Count of predictions:6592
Count of miRNA genes:1210
Interacting mature miRNAs:1562
Transcripts:ENST00000216350, ENST00000324366, ENST00000397440, ENST00000397441, ENST00000421938, ENST00000454731, ENST00000476175, ENST00000538452, ENST00000553417, ENST00000553502, ENST00000553550, ENST00000553641, ENST00000553787, ENST00000553897, ENST00000553915, ENST00000554716, ENST00000554867, ENST00000554910, ENST00000555454, ENST00000555530, ENST00000556032, ENST00000556043, ENST00000556426, ENST00000556616, ENST00000557015, ENST00000557415, ENST00000557443, ENST00000557758
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597368273GWAS1464347_Hcup-to-disc ratio measurement QTL GWAS1464347 (human)1e-13cup-to-disc ratio measurement142292187722921878Human

G21627  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371423,389,782 - 23,389,931UniSTSGRCh37
Build 361422,459,622 - 22,459,771RGDNCBI36
Celera143,252,679 - 3,252,828RGD
Cytogenetic Map14q11.2UniSTS
HuRef143,506,814 - 3,506,963UniSTS
A002Q41  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371423,389,740 - 23,389,954UniSTSGRCh37
Build 361422,459,580 - 22,459,794RGDNCBI36
Celera143,252,637 - 3,252,851RGD
Cytogenetic Map14q11.2UniSTS
HuRef143,506,772 - 3,506,986UniSTS
GeneMap99-GB4 RH Map1417.13UniSTS
NCBI RH Map1431.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4973 1726 2351 6 624 1951 465 2269 7306 6472 53 3734 1 852 1744 1617 175 1


1 to 30 of 98 rows
RefSeq Transcripts NM_001039619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054375270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001750113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_429287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA496357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB451246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB451370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF015913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF167572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL132780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ783364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 98 rows

Ensembl Acc Id: ENST00000216350   ⟹   ENSP00000216350
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,920,530 - 22,929,391 (-)Ensembl
Ensembl Acc Id: ENST00000324366   ⟹   ENSP00000319169
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,920,529 - 22,929,376 (-)Ensembl
Ensembl Acc Id: ENST00000397440   ⟹   ENSP00000380582
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,920,529 - 22,929,356 (-)Ensembl
Ensembl Acc Id: ENST00000397441   ⟹   ENSP00000380583
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,920,525 - 22,929,401 (-)Ensembl
Ensembl Acc Id: ENST00000421938   ⟹   ENSP00000409482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,926,737 - 22,929,368 (-)Ensembl
Ensembl Acc Id: ENST00000454731   ⟹   ENSP00000387663
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,920,825 - 22,923,162 (-)Ensembl
Ensembl Acc Id: ENST00000476175
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,920,529 - 22,922,821 (-)Ensembl
Ensembl Acc Id: ENST00000553417
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,926,481 - 22,927,596 (-)Ensembl
Ensembl Acc Id: ENST00000553502   ⟹   ENSP00000450956
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,924,162 - 22,925,046 (-)Ensembl
Ensembl Acc Id: ENST00000553550   ⟹   ENSP00000450737
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,924,638 - 22,929,392 (-)Ensembl
Ensembl Acc Id: ENST00000553641
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,926,133 - 22,929,351 (-)Ensembl
Ensembl Acc Id: ENST00000553787   ⟹   ENSP00000452102
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,925,000 - 22,929,373 (-)Ensembl
Ensembl Acc Id: ENST00000553897   ⟹   ENSP00000452555
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,920,876 - 22,929,408 (-)Ensembl
Ensembl Acc Id: ENST00000553915   ⟹   ENSP00000451127
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,920,857 - 22,929,365 (-)Ensembl
Ensembl Acc Id: ENST00000554716
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,924,663 - 22,929,365 (-)Ensembl
Ensembl Acc Id: ENST00000554867   ⟹   ENSP00000452218
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,926,235 - 22,929,376 (-)Ensembl
Ensembl Acc Id: ENST00000554910   ⟹   ENSP00000452411
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,926,275 - 22,929,081 (-)Ensembl
Ensembl Acc Id: ENST00000555454   ⟹   ENSP00000451245
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,920,810 - 22,924,179 (-)Ensembl
Ensembl Acc Id: ENST00000555530   ⟹   ENSP00000452409
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,924,317 - 22,928,143 (-)Ensembl
Ensembl Acc Id: ENST00000556032
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,927,526 - 22,929,351 (-)Ensembl
Ensembl Acc Id: ENST00000556043   ⟹   ENSP00000452509
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,924,499 - 22,926,456 (-)Ensembl
Ensembl Acc Id: ENST00000556426
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,928,263 - 22,929,376 (-)Ensembl
Ensembl Acc Id: ENST00000556616   ⟹   ENSP00000450919
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,926,240 - 22,929,376 (-)Ensembl
Ensembl Acc Id: ENST00000557015
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,928,131 - 22,929,394 (-)Ensembl
Ensembl Acc Id: ENST00000557415   ⟹   ENSP00000450633
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,926,238 - 22,929,392 (-)Ensembl
Ensembl Acc Id: ENST00000557443   ⟹   ENSP00000452501
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,920,529 - 22,922,240 (-)Ensembl
Ensembl Acc Id: ENST00000557758
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,922,132 - 22,922,910 (-)Ensembl
Ensembl Acc Id: ENST00000627278   ⟹   ENSP00000485787
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1422,927,596 - 22,929,361 (-)Ensembl
RefSeq Acc Id: NM_001039619   ⟹   NP_001034708
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381422,920,529 - 22,929,376 (-)NCBI
GRCh371423,389,733 - 23,398,789 (-)NCBI
Build 361422,459,573 - 22,468,501 (-)NCBI Archive
HuRef143,506,752 - 3,515,820 (-)NCBI
CHM1_11423,388,338 - 23,397,410 (-)NCBI
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001282953   ⟹   NP_001269882
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381422,920,529 - 22,929,376 (-)NCBI
HuRef143,506,752 - 3,515,820 (-)NCBI
CHM1_11423,388,338 - 23,397,410 (-)NCBI
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001282954   ⟹   NP_001269883
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381422,920,529 - 22,929,376 (-)NCBI
HuRef143,506,752 - 3,515,820 (-)NCBI
CHM1_11423,388,338 - 23,397,410 (-)NCBI
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001282955   ⟹   NP_001269884
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381422,920,529 - 22,929,376 (-)NCBI
HuRef143,506,752 - 3,515,820 (-)NCBI
CHM1_11423,388,338 - 23,397,410 (-)NCBI
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001282956   ⟹   NP_001269885
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381422,920,529 - 22,929,376 (-)NCBI
HuRef143,506,752 - 3,515,820 (-)NCBI
CHM1_11423,388,338 - 23,397,410 (-)NCBI
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBI
Sequence:
RefSeq Acc Id: NM_006109   ⟹   NP_006100
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381422,920,529 - 22,929,376 (-)NCBI
GRCh371423,389,733 - 23,398,789 (-)NCBI
Build 361422,459,573 - 22,468,501 (-)NCBI Archive
HuRef143,506,752 - 3,515,820 (-)NCBI
CHM1_11423,388,338 - 23,397,410 (-)NCBI
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047430881   ⟹   XP_047286837
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381422,920,529 - 22,929,376 (-)NCBI
RefSeq Acc Id: XM_054375270   ⟹   XP_054231245
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBI
RefSeq Acc Id: XR_001750113
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381422,920,529 - 22,929,376 (-)NCBI
Sequence:
RefSeq Acc Id: XR_008488813
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBI
RefSeq Acc Id: XR_008488814
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01417,118,607 - 17,127,453 (-)NCBI
RefSeq Acc Id: XR_429287
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381422,920,529 - 22,929,376 (-)NCBI
Sequence:
1 to 30 of 102 rows
Protein RefSeqs NP_001034708 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269882 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269883 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269884 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269885 (Get FASTA)   NCBI Sequence Viewer  
  NP_006100 (Get FASTA)   NCBI Sequence Viewer  
  XP_047286837 (Get FASTA)   NCBI Sequence Viewer  
  XP_054231245 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB66581 (Get FASTA)   NCBI Sequence Viewer  
  AAF04502 (Get FASTA)   NCBI Sequence Viewer  
  AAH25979 (Get FASTA)   NCBI Sequence Viewer  
  BAG37884 (Get FASTA)   NCBI Sequence Viewer  
  BAG52095 (Get FASTA)   NCBI Sequence Viewer  
  BAG62512 (Get FASTA)   NCBI Sequence Viewer  
  BAG63261 (Get FASTA)   NCBI Sequence Viewer  
  BAG63592 (Get FASTA)   NCBI Sequence Viewer  
  BAG70060 (Get FASTA)   NCBI Sequence Viewer  
  BAG70184 (Get FASTA)   NCBI Sequence Viewer  
  CAF86569 (Get FASTA)   NCBI Sequence Viewer  
  CAG33022 (Get FASTA)   NCBI Sequence Viewer  
  CAW36507 (Get FASTA)   NCBI Sequence Viewer  
  CAW36522 (Get FASTA)   NCBI Sequence Viewer  
  CAW47075 (Get FASTA)   NCBI Sequence Viewer  
  CAW47090 (Get FASTA)   NCBI Sequence Viewer  
  CAW52884 (Get FASTA)   NCBI Sequence Viewer  
  CAW52899 (Get FASTA)   NCBI Sequence Viewer  
  CAW54329 (Get FASTA)   NCBI Sequence Viewer  
  CAW54344 (Get FASTA)   NCBI Sequence Viewer  
  CAW56663 (Get FASTA)   NCBI Sequence Viewer  
  CAW56678 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 102 rows
1 to 5 of 28 rows
1 to 5 of 28 rows
RefSeq Acc Id: NP_006100   ⟸   NM_006109
- Peptide Label: isoform a
- UniProtKB: Q6IBR1 (UniProtKB/Swiss-Prot),   E2QRE7 (UniProtKB/Swiss-Prot),   D3DS33 (UniProtKB/Swiss-Prot),   B5BU10 (UniProtKB/Swiss-Prot),   B4DY30 (UniProtKB/Swiss-Prot),   B4DX49 (UniProtKB/Swiss-Prot),   A8MZ91 (UniProtKB/Swiss-Prot),   A8MTP3 (UniProtKB/Swiss-Prot),   Q9UKH1 (UniProtKB/Swiss-Prot),   O14744 (UniProtKB/Swiss-Prot),   B2RDD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034708   ⟸   NM_001039619
- Peptide Label: isoform b
- UniProtKB: B2RDD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269884   ⟸   NM_001282955
- Peptide Label: isoform e
- UniProtKB: B2RDD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269883   ⟸   NM_001282954
- Peptide Label: isoform d
- UniProtKB: B4DV00 (UniProtKB/TrEMBL),   B2RDD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269882   ⟸   NM_001282953
- Peptide Label: isoform c
- UniProtKB: B2RDD7 (UniProtKB/TrEMBL)
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-O14744-F1-model_v2 AlphaFold O14744 1-637 view protein structure

RGD ID:6791903
Promoter ID:HG_KWN:18976
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000216350,   NM_001039619,   OTTHUMT00000071674,   OTTHUMT00000071677,   UC001WHN.1,   UC010AKD.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361422,468,346 - 22,469,502 (-)MPROMDB
RGD ID:6851288
Promoter ID:EP73442
Type:initiation region
Name:HS_SKB1
Description:SKB1 homolog (S. pombe).
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 361422,468,425 - 22,468,485EPD
RGD ID:7227071
Promoter ID:EPDNEW_H19281
Type:initiation region
Name:PRMT5_1
Description:protein arginine methyltransferase 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381422,929,376 - 22,929,436EPDNEW


1 to 40 of 73 rows
Database
Acc Id
Source(s)
COSMIC PRMT5 COSMIC
Ensembl Genes ENSG00000100462 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000216350 ENTREZGENE
  ENST00000216350.12 UniProtKB/Swiss-Prot
  ENST00000324366 ENTREZGENE
  ENST00000324366.13 UniProtKB/Swiss-Prot
  ENST00000397440 ENTREZGENE
  ENST00000397440.8 UniProtKB/Swiss-Prot
  ENST00000397441 ENTREZGENE
  ENST00000397441.6 UniProtKB/Swiss-Prot
  ENST00000553897 ENTREZGENE
  ENST00000553897.5 UniProtKB/Swiss-Prot
  ENST00000553915 ENTREZGENE
Gene3D-CATH 3.40.50.150 UniProtKB/Swiss-Prot
  Divalent-metal-dependent TIM barrel enzymes UniProtKB/Swiss-Prot
  Hnrnp arginine n-methyltransferase1 UniProtKB/Swiss-Prot
GTEx ENSG00000100462 GTEx
HGNC ID HGNC:10894 ENTREZGENE
Human Proteome Map PRMT5 Human Proteome Map
InterPro Arg_MeTrfase UniProtKB/Swiss-Prot
  Arg_MeTrfase_PRMT5 UniProtKB/Swiss-Prot
  PRMT5 UniProtKB/Swiss-Prot
  PRMT5_C UniProtKB/Swiss-Prot
  PRMT5_TIM UniProtKB/Swiss-Prot
  SAM-dependent_MTases UniProtKB/Swiss-Prot
KEGG Report hsa:10419 UniProtKB/Swiss-Prot
NCBI Gene 10419 ENTREZGENE
OMIM 604045 OMIM
PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 UniProtKB/Swiss-Prot
  PTHR10738 UniProtKB/Swiss-Prot
Pfam PRMT5 UniProtKB/Swiss-Prot
  PRMT5_C UniProtKB/Swiss-Prot
  PRMT5_TIM UniProtKB/Swiss-Prot
PharmGKB PA35794 PharmGKB
PIRSF Skb1_MeTrfase UniProtKB/Swiss-Prot
PROSITE SAM_MT_PRMT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot
UniProt A8MTP3 ENTREZGENE
  A8MZ91 ENTREZGENE
  ANM5_HUMAN UniProtKB/Swiss-Prot
1 to 40 of 73 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 PRMT5  protein arginine methyltransferase 5  HRMT1L5  HMT1 hnRNP methyltransferase-like 5 (S. cerevisiae)  Data merged from RGD:1349514 737654 PROVISIONAL