RORC (RAR related orphan receptor C) - Rat Genome Database

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Gene: RORC (RAR related orphan receptor C) Canis lupus familiaris
Analyze
Symbol: RORC
Name: RAR related orphan receptor C
RGD ID: 12421811
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); transcription coactivator binding (ortholog); INVOLVED IN adipose tissue development (ortholog); alpha-beta T cell differentiation (ortholog); cell differentiation (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); Animal Toxoplasmosis (ortholog); bacterial pneumonia (ortholog); FOUND IN external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear receptor ROR-gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,821,498 - 60,842,485 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,821,981 - 60,842,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1760,263,366 - 60,285,188 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01761,838,557 - 61,860,379 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1761,837,962 - 61,860,343 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11760,665,332 - 60,687,158 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,751,477 - 60,773,308 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01761,480,593 - 61,502,436 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RORCDoggastrointestinal stromal tumor  ISORORC (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
RORCDoggenetic disease  ISORORC (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
RORCDogimmunodeficiency 42  ISORORC (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16199547 more ...
RORCDogMHC class II deficiency  ISORORC (Homo sapiens)8554872ClinVar Annotator: match by term: MHC class II deficiencyClinVarPMID:28492532
RORCDogparathyroid carcinoma  ISORORC (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
RORCDogsevere congenital neutropenia 3  ISORORC (Homo sapiens)8554872ClinVar Annotator: match by term: Kostmann syndromeClinVarPMID:28492532
RORCDogsevere congenital neutropenia 5  ISORORC (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital neutropenia-myelofibrosis-nephromegaly syndromeClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RORCDogadvanced sleep phase syndrome  ISORORC (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25395965
RORCDogInflammation  ISORORC (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:22325453
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RORCDogSjogren's syndrome  ISORorc (Mus musculus)9068941OMIM:270150MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RORCDogimmunodeficiency 42  ISORORC (Homo sapiens)7240710 OMIM 


Biological Process
1 to 20 of 29 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RORCDogadipose tissue development involved_inISORorc (Mus musculus)9068941 PMID:21853531UniProtPMID:21853531
RORCDogalpha-beta T cell differentiation acts_upstream_of_or_withinISOMGI:30266359068941 PMID:15247480MGIPMID:15247480
RORCDogcell differentiation acts_upstream_of_or_withinISOMGI:30266359068941 PMID:14691482MGIPMID:14691482
RORCDogcellular response to sterol involved_inIEAUniProtKB:P51449 and ensembl:ENSP00000327025150520179 EnsemblGO_REF:0000107
RORCDogcircadian regulation of gene expression involved_inISORorc (Mus musculus)9068941 PMID:22753030 and PMID:23723244UniProtPMID:22753030 and PMID:23723244
RORCDogcircadian rhythm  ISORorc (Rattus norvegicus)9068941 RGDPMID:15781226 and REF_RGD_ID:2325957
RORCDogintracellular receptor signaling pathway involved_inIEAGO:0004879150520179 GOCGO_REF:0000108
RORCDoglymph node development involved_inISORorc (Mus musculus)9068941 PMID:14691482UniProtPMID:14691482
RORCDoglymph node development acts_upstream_of_or_withinISOMGI:30266359068941 PMID:14691482MGIPMID:14691482
RORCDogmucosa-associated lymphoid tissue development acts_upstream_of_or_withinISOMGI:30266359068941 PMID:15247480MGIPMID:15247480
RORCDognegative regulation of thymocyte apoptotic process involved_inISORorc (Mus musculus)9068941 PMID:16148126UniProtPMID:16148126
RORCDognegative regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:P51449 and ensembl:ENSP00000327025150520179 EnsemblGO_REF:0000107
RORCDogPeyer's patch development involved_inISORorc (Mus musculus)9068941 PMID:14691482UniProtPMID:14691482
RORCDogpositive regulation of circadian rhythm involved_inISORorc (Mus musculus)9068941 PMID:22753030UniProtPMID:22753030
RORCDogpositive regulation of DNA-templated transcription involved_inISORorc (Mus musculus)9068941 PMID:21628546 and PMID:23723244UniProtPMID:21628546 and PMID:23723244
RORCDogprotein phosphorylation acts_upstream_of_or_withinISORorc (Mus musculus)9068941 PMID:15010863MGIPMID:15010863
RORCDogregulation of DNA-templated transcription involved_inIEAInterPro:IPR001628 more ...150520179 InterProGO_REF:0000002
RORCDogregulation of fat cell differentiation involved_inISORorc (Mus musculus)9068941 PMID:21853531UniProtPMID:21853531
RORCDogregulation of gamma-delta T cell differentiation acts_upstream_of_or_withinISORorc (Mus musculus)9068941 PMID:21737317MGIPMID:21737317
RORCDogregulation of gene expression involved_inIEAARBA:ARBA00028334150520179 UniProtGO_REF:0000117
1 to 20 of 29 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RORCDogexternal side of plasma membrane located_inISORorc (Mus musculus)9068941 PMID:23034280MGIPMID:23034280
RORCDognuclear body located_inIEAUniProtKB:P51449 more ...150520179 EnsemblGO_REF:0000107
RORCDognucleus located_inIEAInterPro:IPR003079150520179 InterProGO_REF:0000002
RORCDognucleus is_active_inIBAFB:FBgn0000448 more ...150520179 GO_CentralGO_REF:0000033
RORCDognucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
RORCDognucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
RORCDognucleus located_inIEAUniProtKB:P51449 and ensembl:ENSP00000327025150520179 EnsemblGO_REF:0000107

Molecular Function
1 to 20 of 29 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RORCDogDNA binding enablesIEAInterPro:IPR003079150520179 InterProGO_REF:0000002
RORCDogDNA binding enablesIEAUniProtKB-KW:KW-0238150520179 UniProtGO_REF:0000043
RORCDogDNA-binding transcription factor activity enablesIEAInterPro:IPR001628150520179 InterProGO_REF:0000002
RORCDogDNA-binding transcription factor activity, RNA polymerase II-specific enablesISORorc (Mus musculus)9068941 PMID:18164222GO_CentralPMID:18164222
RORCDogDNA-binding transcription repressor activity, RNA polymerase II-specific enablesIEAUniProtKB:P51449 and ensembl:ENSP00000327025150520179 EnsemblGO_REF:0000107
RORCDogligand-modulated transcription factor activity enablesIEAUniProtKB:P51449 and ensembl:ENSP00000327025150520179 EnsemblGO_REF:0000107
RORCDogmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
RORCDognuclear receptor activity enablesIEAInterPro:IPR003079150520179 InterProGO_REF:0000002
RORCDognuclear receptor activity enablesIBAFB:FBgn0000448 and PANTHER:PTN000637843150520179 GO_CentralGO_REF:0000033
RORCDogoxysterol binding enablesIEAUniProtKB:P51449 and ensembl:ENSP00000327025150520179 EnsemblGO_REF:0000107
RORCDogoxysterol binding enablesIBAPANTHER:PTN008698555 more ...150520179 GO_CentralGO_REF:0000033
RORCDogprotein binding enablesISOUniProtKB:P977849068941 PMID:22170608UniProtPMID:22170608
RORCDogprotein binding enablesISOUniProtKB:Q99JB69068941 PMID:18368049UniProtPMID:18368049
RORCDogprotein binding enablesISOUniProtKB:Q16665 and UniProtKB:Q612219068941 PMID:21871655IntActPMID:21871655
RORCDogprotein binding enablesISOUniProtKB:O08785 and UniProtKB:Q9WTL89068941 PMID:23555304IntActPMID:23555304
RORCDogprotein binding enablesISOUniProtKB:P621959068941 PMID:32296183IntActPMID:32296183
RORCDogprotein binding enablesISOUniProtKB:Q157889068941 PMID:20203100IntActPMID:20203100
RORCDogprotein binding enablesISOUniProtKB:Q9BZS19068941 PMID:18368049UniProtPMID:18368049
RORCDogprotein binding enablesISOUniProtKB:P484379068941 PMID:23723244UniProtPMID:23723244
RORCDogprotein binding enablesISOUniProtKB:Q622279068941 PMID:25212631UniProtPMID:25212631
1 to 20 of 29 rows

PMID:22301074   PMID:30032202  



RORC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,821,498 - 60,842,485 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,821,981 - 60,842,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1760,263,366 - 60,285,188 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01761,838,557 - 61,860,379 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1761,837,962 - 61,860,343 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11760,665,332 - 60,687,158 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,751,477 - 60,773,308 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01761,480,593 - 61,502,436 (-)NCBIUU_Cfam_GSD_1.0
RORC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,806,071 - 151,831,802 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,806,071 - 151,831,845 (-)EnsemblGRCh38hg38GRCh38
GRCh371151,778,547 - 151,804,278 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361150,045,171 - 150,070,972 (-)NCBINCBI36Build 36hg18NCBI36
Build 341148,591,621 - 148,617,421NCBI
Celera1124,893,230 - 124,919,042 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1123,155,515 - 123,181,337 (-)NCBIHuRef
CHM1_11153,173,871 - 153,199,672 (-)NCBICHM1_1
T2T-CHM13v2.01150,929,559 - 150,955,307 (-)NCBIT2T-CHM13v2.0
Rorc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,280,106 - 94,305,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,280,101 - 94,305,583 (+)EnsemblGRCm39 Ensembl
GRCm38394,372,794 - 94,398,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl394,372,794 - 94,398,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv37394,176,748 - 94,202,161 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36394,458,190 - 94,483,992 (+)NCBIMGSCv36mm8
Celera395,819,177 - 95,843,048 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.56NCBI
Rorc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82184,698,779 - 184,723,942 (+)NCBIGRCr8
mRatBN7.22182,009,707 - 182,034,910 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,009,286 - 182,034,907 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02195,612,471 - 195,636,797 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2195,617,021 - 195,637,630 (+)EnsemblRnor6.0rn6Rnor6.0
RGSC_v3.42189,345,134 - 189,369,442 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2174,560,165 - 174,584,474 (+)NCBICelera
Cytogenetic Map2q34NCBI
Rorc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955589590,743 - 616,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955589590,653 - 616,784 (+)NCBIChiLan1.0ChiLan1.0
RORC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2197,991,871 - 98,017,622 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,743,055 - 97,768,831 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01127,164,725 - 127,190,479 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11130,808,705 - 130,834,490 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,808,705 - 130,834,490 (-)Ensemblpanpan1.1panPan2
Rorc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,967,256 - 22,990,222 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,997,640 - 2,020,649 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365801,997,640 - 2,020,649 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RORC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,375,136 - 97,400,209 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,374,672 - 97,399,017 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24106,397,490 - 106,421,980 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RORC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12011,854,911 - 11,880,221 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2011,855,005 - 11,879,717 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603811,414,109 - 11,440,149 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rorc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477219,477,093 - 19,501,169 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477219,478,403 - 19,501,184 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in RORC
295 total Variants



adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10


1 to 18 of 18 rows
RefSeq Transcripts XM_005630825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005630826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038453350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 18 of 18 rows

Ensembl Acc Id: ENSCAFT00000020479   ⟹   ENSCAFP00000019006
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1760,821,981 - 60,842,453 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000079712   ⟹   ENSCAFP00000047912
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1760,821,981 - 60,837,574 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845044385   ⟹   ENSCAFP00845034781
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1761,837,962 - 61,860,343 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845044500   ⟹   ENSCAFP00845034868
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1761,837,962 - 61,855,473 (-)Ensembl
RefSeq Acc Id: XM_005630825   ⟹   XP_005630882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11760,821,498 - 60,842,485 (-)NCBI
Dog10K_Boxer_Tasha1760,263,366 - 60,285,188 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005630826   ⟹   XP_005630883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11760,821,498 - 60,842,485 (-)NCBI
Dog10K_Boxer_Tasha1760,263,366 - 60,285,188 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038423216   ⟹   XP_038279144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01761,838,557 - 61,860,379 (-)NCBI
RefSeq Acc Id: XM_038423217   ⟹   XP_038279145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01761,838,557 - 61,860,379 (-)NCBI
RefSeq Acc Id: XM_038423218   ⟹   XP_038279146
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01761,838,557 - 61,852,021 (-)NCBI
RefSeq Acc Id: XM_038453350   ⟹   XP_038309278
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1760,263,366 - 60,276,828 (-)NCBI
RefSeq Acc Id: XM_038499702   ⟹   XP_038355630
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11760,665,332 - 60,687,158 (-)NCBI
RefSeq Acc Id: XM_038562271   ⟹   XP_038418199
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01761,480,593 - 61,502,436 (-)NCBI
RefSeq Acc Id: XM_038562272   ⟹   XP_038418200
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01761,480,593 - 61,502,436 (-)NCBI
RefSeq Acc Id: XM_038562273   ⟹   XP_038418201
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01761,480,593 - 61,494,076 (-)NCBI
RefSeq Acc Id: XM_038626366   ⟹   XP_038482294
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01760,751,477 - 60,773,308 (-)NCBI
RefSeq Acc Id: XM_038626367   ⟹   XP_038482295
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01760,751,477 - 60,773,308 (-)NCBI
RefSeq Acc Id: XM_038626368   ⟹   XP_038482296
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01760,751,477 - 60,764,949 (-)NCBI
1 to 5 of 17 rows
1 to 5 of 17 rows
RefSeq Acc Id: XP_005630883   ⟸   XM_005630826
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SSJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005630882   ⟸   XM_005630825
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MZK9 (UniProtKB/TrEMBL),   A0A8I3PTL7 (UniProtKB/TrEMBL),   A0A8C0SSJ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000019006   ⟸   ENSCAFT00000020479
Ensembl Acc Id: ENSCAFP00000047912   ⟸   ENSCAFT00000079712
RefSeq Acc Id: XP_038355630   ⟸   XM_038499702
- Peptide Label: isoform X1
NR LBD   Nuclear receptor

RGD ID:13686410
Promoter ID:EPDNEW_C4476
Type:multiple initiation site
Name:RORC_1
Description:RAR related orphan receptor C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11760,842,443 - 60,842,503EPDNEW


1 to 40 of 45 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00000012884 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030010688 UniProtKB/TrEMBL
  ENSCAFG00040015522 UniProtKB/TrEMBL
  ENSCAFG00845025144 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000020479.6 UniProtKB/TrEMBL
  ENSCAFT00000079712.2 UniProtKB/TrEMBL
  ENSCAFT00030019824.1 UniProtKB/TrEMBL
  ENSCAFT00030019910.1 UniProtKB/TrEMBL
  ENSCAFT00040028617.1 UniProtKB/TrEMBL
  ENSCAFT00845044385 ENTREZGENE
  ENSCAFT00845044385.1 UniProtKB/TrEMBL
  ENSCAFT00845044500 ENTREZGENE
  ENSCAFT00845044500.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/TrEMBL
  NR_DBD_ROR UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  ROR_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
KEGG Report cfa:483205 UniProtKB/TrEMBL
NCBI Gene RORC ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR HR3-RELATED UniProtKB/TrEMBL
  NUCLEAR RECEPTOR ROR-GAMMA UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PRINTS RORNUCRECPTR UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF48508 UniProtKB/TrEMBL
UniProt A0A8C0K974 ENTREZGENE
  A0A8C0MV51 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 45 rows