Rorc (RAR related orphan receptor C) - Rat Genome Database

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Gene: Rorc (RAR related orphan receptor C) Chinchilla lanigera
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Symbol: Rorc
Name: RAR related orphan receptor C
RGD ID: 9008811
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN adipose tissue development (ortholog); alpha-beta T cell differentiation (ortholog); cell differentiation (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); Animal Toxoplasmosis (ortholog); bacterial pneumonia (ortholog); FOUND IN external side of plasma membrane (ortholog); nuclear body (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nuclear receptor ROR-gamma; RAR-related orphan receptor C
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955589590,743 - 616,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955589590,653 - 616,784 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Rorc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955589590,743 - 616,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955589590,653 - 616,784 (+)NCBIChiLan1.0ChiLan1.0
RORC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1151,806,071 - 151,831,845 (-)EnsemblGRCh38hg38GRCh38
GRCh381151,806,071 - 151,832,451 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371151,778,547 - 151,804,278 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361150,045,171 - 150,070,972 (-)NCBINCBI36hg18NCBI36
Build 341148,591,621 - 148,617,421NCBI
Celera1124,893,230 - 124,919,042 (-)NCBI
Cytogenetic Map1q21.3NCBI
HuRef1123,155,515 - 123,181,337 (-)NCBIHuRef
CHM1_11153,173,871 - 153,199,672 (-)NCBICHM1_1
Rorc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,280,101 - 94,305,583 (+)NCBIGRCm39mm39
GRCm39 Ensembl394,280,101 - 94,305,583 (+)Ensembl
GRCm38394,372,794 - 94,398,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl394,372,794 - 94,398,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv37394,176,748 - 94,202,161 (+)NCBIGRCm37mm9NCBIm37
MGSCv36394,458,190 - 94,483,992 (+)NCBImm8
Celera395,819,177 - 95,843,048 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
Rorc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22182,009,707 - 182,034,910 (+)NCBI
Rnor_6.0 Ensembl2195,617,021 - 195,637,630 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02195,612,471 - 195,636,797 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
RGSC_v3.42189,345,134 - 189,369,442 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2174,560,165 - 174,584,474 (+)NCBICelera
Cytogenetic Map2q34NCBI
RORC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11130,808,705 - 130,834,490 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,808,705 - 130,834,490 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01127,164,725 - 127,190,479 (-)NCBIMhudiblu_PPA_v0panPan3
RORC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,821,498 - 60,842,485 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,821,981 - 60,842,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1760,263,366 - 60,285,188 (-)NCBI
ROS_Cfam_1.01761,838,557 - 61,860,379 (-)NCBI
UMICH_Zoey_3.11760,665,332 - 60,687,158 (-)NCBI
UNSW_CanFamBas_1.01760,751,477 - 60,773,308 (-)NCBI
UU_Cfam_GSD_1.01761,480,593 - 61,502,436 (-)NCBI
Rorc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,967,256 - 22,990,222 (-)NCBI
SpeTri2.0NW_0049365801,997,640 - 2,020,649 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RORC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,375,136 - 97,400,231 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,374,672 - 97,399,017 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24106,397,490 - 106,421,980 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RORC
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12011,854,911 - 11,880,221 (+)NCBI
ChlSab1.1 Ensembl2011,855,005 - 11,879,717 (+)Ensembl
Vero_WHO_p1.0NW_02366603811,414,109 - 11,440,149 (+)NCBI
Rorc
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477219,478,403 - 19,501,184 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000000835   ⟹   ENSCLAP00000000798
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955589590,743 - 616,694 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000000836   ⟹   ENSCLAP00000000799
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955589596,004 - 616,694 (+)Ensembl
RefSeq Acc Id: XM_005414548   ⟹   XP_005414605
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955589590,653 - 616,784 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414605 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005414605   ⟸   XM_005414548
- Sequence:
RefSeq Acc Id: ENSCLAP00000000798   ⟸   ENSCLAT00000000835
RefSeq Acc Id: ENSCLAP00000000799   ⟸   ENSCLAT00000000836


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000624 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000000798 ENTREZGENE
Ensembl Transcript ENSCLAT00000000835 ENTREZGENE
NCBI Gene Rorc ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Rorc  RAR related orphan receptor C    RAR-related orphan receptor C  Symbol and/or name change 5135510 APPROVED