RORC (RAR related orphan receptor C) - Rat Genome Database

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Gene: RORC (RAR related orphan receptor C) Chlorocebus sabaeus
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Symbol: RORC
Name: RAR related orphan receptor C
RGD ID: 18342812
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); ligand-activated transcription factor activity (ortholog); INVOLVED IN adipose tissue development (ortholog); alpha-beta T cell differentiation (ortholog); cell differentiation (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); Animal Toxoplasmosis (ortholog); bacterial pneumonia (ortholog); FOUND IN external side of plasma membrane (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear receptor ROR-gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12011,854,911 - 11,880,221 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2011,855,005 - 11,879,717 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603811,414,109 - 11,440,149 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RORC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12011,854,911 - 11,880,221 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2011,855,005 - 11,879,717 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603811,414,109 - 11,440,149 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RORC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,806,071 - 151,831,802 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,806,071 - 151,831,845 (-)EnsemblGRCh38hg38GRCh38
GRCh371151,778,547 - 151,804,278 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361150,045,171 - 150,070,972 (-)NCBINCBI36Build 36hg18NCBI36
Build 341148,591,621 - 148,617,421NCBI
Celera1124,893,230 - 124,919,042 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1123,155,515 - 123,181,337 (-)NCBIHuRef
CHM1_11153,173,871 - 153,199,672 (-)NCBICHM1_1
T2T-CHM13v2.01150,929,559 - 150,955,307 (-)NCBIT2T-CHM13v2.0
Rorc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,280,106 - 94,305,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,280,101 - 94,305,583 (+)EnsemblGRCm39 Ensembl
GRCm38394,372,794 - 94,398,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl394,372,794 - 94,398,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv37394,176,748 - 94,202,161 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36394,458,190 - 94,483,992 (+)NCBIMGSCv36mm8
Celera395,819,177 - 95,843,048 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.56NCBI
Rorc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82184,698,779 - 184,723,942 (+)NCBIGRCr8
mRatBN7.22182,009,707 - 182,034,910 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,009,286 - 182,034,907 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02195,612,471 - 195,636,797 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2195,617,021 - 195,637,630 (+)EnsemblRnor6.0rn6Rnor6.0
RGSC_v3.42189,345,134 - 189,369,442 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2174,560,165 - 174,584,474 (+)NCBICelera
Cytogenetic Map2q34NCBI
Rorc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955589590,743 - 616,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955589590,653 - 616,784 (+)NCBIChiLan1.0ChiLan1.0
RORC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2197,991,871 - 98,017,622 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,743,055 - 97,768,831 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01127,164,725 - 127,190,479 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11130,808,705 - 130,834,490 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,808,705 - 130,834,490 (-)Ensemblpanpan1.1panPan2
RORC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,821,498 - 60,842,485 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,821,981 - 60,842,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1760,263,366 - 60,285,188 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01761,838,557 - 61,860,379 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1761,837,962 - 61,860,343 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11760,665,332 - 60,687,158 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,751,477 - 60,773,308 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01761,480,593 - 61,502,436 (-)NCBIUU_Cfam_GSD_1.0
Rorc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,967,256 - 22,990,222 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,997,640 - 2,020,649 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365801,997,640 - 2,020,649 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RORC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,375,136 - 97,400,209 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,374,672 - 97,399,017 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24106,397,490 - 106,421,980 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rorc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477219,477,093 - 19,501,169 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477219,478,403 - 19,501,184 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 20
Low 16 18 38
Below cutoff 2 2

Sequence


RefSeq Acc Id: ENSCSAT00000016707   ⟹   ENSCSAP00000016208
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2011,855,005 - 11,879,717 (+)Ensembl
RefSeq Acc Id: XM_007977154   ⟹   XP_007975345
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12011,854,915 - 11,880,221 (+)NCBI
Vero_WHO_p1.0NW_02366603811,414,109 - 11,440,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037997935   ⟹   XP_037853863
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603811,414,109 - 11,440,149 (+)NCBI
RefSeq Acc Id: XM_037997936   ⟹   XP_037853864
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603811,414,210 - 11,440,149 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007975345 (Get FASTA)   NCBI Sequence Viewer  
  XP_037853863 (Get FASTA)   NCBI Sequence Viewer  
  XP_037853864 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016208.1
RefSeq Acc Id: XP_007975345   ⟸   XM_007977154
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S5R9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000016208   ⟸   ENSCSAT00000016707
RefSeq Acc Id: XP_037853863   ⟸   XM_037997935
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S5R9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037853864   ⟸   XM_037997936
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001825 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016707.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/TrEMBL
  NR_DBD_ROR UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  ROR_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
NCBI Gene RORC ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR HR3-RELATED UniProtKB/TrEMBL
  NUCLEAR RECEPTOR ROR-GAMMA UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PRINTS RORNUCRECPTR UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF48508 UniProtKB/TrEMBL
UniProt A0A0D9S5R9 ENTREZGENE, UniProtKB/TrEMBL