RORC (RAR related orphan receptor C) - Rat Genome Database

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Gene: RORC (RAR related orphan receptor C) Pan paniscus
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Symbol: RORC
Name: RAR related orphan receptor C
RGD ID: 12028797
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN adipose tissue development (ortholog); alpha-beta T cell differentiation (ortholog); cell differentiation (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); Animal Toxoplasmosis (ortholog); bacterial pneumonia (ortholog); FOUND IN external side of plasma membrane (ortholog); nuclear body (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nuclear receptor ROR-gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11130,808,705 - 130,834,490 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,808,705 - 130,834,490 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01127,164,725 - 127,190,479 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
RORC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11130,808,705 - 130,834,490 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,808,705 - 130,834,490 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01127,164,725 - 127,190,479 (-)NCBIMhudiblu_PPA_v0panPan3
RORC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1151,806,071 - 151,831,845 (-)EnsemblGRCh38hg38GRCh38
GRCh381151,806,071 - 151,832,451 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371151,778,547 - 151,804,278 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361150,045,171 - 150,070,972 (-)NCBINCBI36hg18NCBI36
Build 341148,591,621 - 148,617,421NCBI
Celera1124,893,230 - 124,919,042 (-)NCBI
Cytogenetic Map1q21.3NCBI
HuRef1123,155,515 - 123,181,337 (-)NCBIHuRef
CHM1_11153,173,871 - 153,199,672 (-)NCBICHM1_1
Rorc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,280,101 - 94,305,583 (+)NCBIGRCm39mm39
GRCm39 Ensembl394,280,101 - 94,305,583 (+)Ensembl
GRCm38394,372,794 - 94,398,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl394,372,794 - 94,398,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv37394,176,748 - 94,202,161 (+)NCBIGRCm37mm9NCBIm37
MGSCv36394,458,190 - 94,483,992 (+)NCBImm8
Celera395,819,177 - 95,843,048 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
Rorc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22182,009,707 - 182,034,910 (+)NCBI
Rnor_6.0 Ensembl2195,617,021 - 195,637,630 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02195,612,471 - 195,636,797 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
RGSC_v3.42189,345,134 - 189,369,442 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2174,560,165 - 174,584,474 (+)NCBICelera
Cytogenetic Map2q34NCBI
Rorc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955589590,743 - 616,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955589590,653 - 616,784 (+)NCBIChiLan1.0ChiLan1.0
RORC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,821,498 - 60,842,485 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,821,981 - 60,842,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1760,263,366 - 60,285,188 (-)NCBI
ROS_Cfam_1.01761,838,557 - 61,860,379 (-)NCBI
UMICH_Zoey_3.11760,665,332 - 60,687,158 (-)NCBI
UNSW_CanFamBas_1.01760,751,477 - 60,773,308 (-)NCBI
UU_Cfam_GSD_1.01761,480,593 - 61,502,436 (-)NCBI
Rorc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,967,256 - 22,990,222 (-)NCBI
SpeTri2.0NW_0049365801,997,640 - 2,020,649 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RORC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,375,136 - 97,400,231 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,374,672 - 97,399,017 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24106,397,490 - 106,421,980 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RORC
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12011,854,911 - 11,880,221 (+)NCBI
ChlSab1.1 Ensembl2011,855,005 - 11,879,717 (+)Ensembl
Vero_WHO_p1.0NW_02366603811,414,109 - 11,440,149 (+)NCBI
Rorc
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477219,478,403 - 19,501,184 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000030446   ⟹   ENSPPAP00000007832
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1130,808,705 - 130,834,490 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000030449   ⟹   ENSPPAP00000007835
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1130,808,705 - 130,828,717 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000030456   ⟹   ENSPPAP00000007842
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1130,810,105 - 130,820,989 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000030460   ⟹   ENSPPAP00000007845
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1130,810,105 - 130,820,346 (-)Ensembl
RefSeq Acc Id: XM_003817226   ⟹   XP_003817274
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11130,808,705 - 130,828,717 (-)NCBI
Mhudiblu_PPA_v01127,164,725 - 127,184,748 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003817227   ⟹   XP_003817275
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11130,808,705 - 130,834,490 (-)NCBI
Mhudiblu_PPA_v01127,164,764 - 127,190,479 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003817229   ⟹   XP_003817277
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11130,808,705 - 130,834,402 (-)NCBI
Mhudiblu_PPA_v01127,164,764 - 127,190,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034935474   ⟹   XP_034791365
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01127,164,764 - 127,188,538 (-)NCBI
RefSeq Acc Id: XM_034935500   ⟹   XP_034791391
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01127,171,910 - 127,188,538 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003817275   ⟸   XM_003817227
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003817277   ⟸   XM_003817229
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003817274   ⟸   XM_003817226
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_034791365   ⟸   XM_034935474
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034791391   ⟸   XM_034935500
- Peptide Label: isoform X5
RefSeq Acc Id: ENSPPAP00000007845   ⟸   ENSPPAT00000030460
RefSeq Acc Id: ENSPPAP00000007842   ⟸   ENSPPAT00000030456
RefSeq Acc Id: ENSPPAP00000007835   ⟸   ENSPPAT00000030449
RefSeq Acc Id: ENSPPAP00000007832   ⟸   ENSPPAT00000030446
Protein Domains
NR LBD   Nuclear receptor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027120 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000007832 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000007835 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000007842 UniProtKB/TrEMBL
  ENSPPAP00000007845 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000030446 UniProtKB/TrEMBL
  ENSPPAT00000030449 UniProtKB/TrEMBL
  ENSPPAT00000030456 UniProtKB/TrEMBL
  ENSPPAT00000030460 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro NHR_like_dom_sf UniProtKB/TrEMBL
  NR_DBD_ROR UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  ROR_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
KEGG Report pps:100982206 UniProtKB/TrEMBL
NCBI Gene RORC ENTREZGENE
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PRINTS RORNUCRECPTR UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/TrEMBL
UniProt A0A2R8ZTF3_PANPA UniProtKB/TrEMBL
  A0A2R8ZTG3_PANPA UniProtKB/TrEMBL
  A0A2R8ZY21_PANPA UniProtKB/TrEMBL
  A0A2R8ZY32_PANPA UniProtKB/TrEMBL
  A1YG06_PANPA UniProtKB/TrEMBL
  A1YG07_PANPA UniProtKB/TrEMBL