VEGFA (vascular endothelial growth factor A) - Rat Genome Database

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Gene: VEGFA (vascular endothelial growth factor A) Canis lupus familiaris
Analyze
Symbol: VEGFA
Name: vascular endothelial growth factor A
RGD ID: 12166888
Description: ENCODES a protein that exhibits chemoattractant activity (ortholog); cytokine activity (ortholog); fibronectin binding (ortholog); INVOLVED IN angiogenesis (ortholog); angiogenesis involved in coronary vascular morphogenesis (ortholog); basophil chemotaxis (ortholog); PARTICIPATES IN altered vascular endothelial growth factor signaling pathway involving proteins affecting its expression; altered vascular endothelial growth factor signaling pathway involving the main players; bevacizumab pharmacodynamics pathway; ASSOCIATED WITH acoustic neuroma (ortholog); acute chest syndrome (ortholog); acute kidney failure (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: vascular endothelial growth factor 188; vascular permeability factor; VEGF; VEGF-A; VPF
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,209,032 - 12,224,978 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,208,231 - 12,224,965 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,235,225 - 12,250,737 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,693,104 - 12,708,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,691,593 - 12,708,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,217,730 - 12,233,243 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,305,204 - 12,320,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,398,451 - 12,413,981 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 208 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
VEGFADogacoustic neuroma  ISORGD:7310729068941 RGDPMID:14660915|REF_RGD_ID:8547959
VEGFADogacute chest syndrome susceptibilityISORGD:7310729068941associated with Anemia, Sickle Cell;DNA:SNPs: : rs2010963, rs833068,rs3025020(human)RGDPMID:22925497|REF_RGD_ID:11075235
VEGFADogacute chest syndrome susceptibilityISORGD:7310729068941associated with Anemia, Sickle Cell;DNA:polymorphism:583C > T (human)RGDPMID:25130874|REF_RGD_ID:11075233
VEGFADogAcute Lung Injury  ISORGD:6199919068941associated with Endotoxemia;mRNA, protein:altered expression:lung, plasmaRGDPMID:21528367|REF_RGD_ID:5684427
VEGFADogacute myeloid leukemia disease_progressionISORGD:7310729068941DNA:SNP,haplotype: :(rs3025039),(rs699947),(rs833061)(human)RGDPMID:17983459|REF_RGD_ID:13432134
VEGFADogadhesions of uterus  ISORGD:6199919068941mRNA, protein:increased expression:endometriumRGDPMID:31596310|REF_RGD_ID:126925216
VEGFADogadult-onset Still's disease  ISORGD:7310729068941protein:increased expression:serum:RGDPMID:24387171|REF_RGD_ID:8548659
VEGFADogAlcoholic Liver Diseases  ISORGD:7310729068941protein:increased expression:plasmaRGDPMID:24959006|REF_RGD_ID:15014784
VEGFADogallergic contact dermatitis  ISORGD:6199919068941mRNA:protein:skin:RGDPMID:7876550|REF_RGD_ID:7421586
VEGFADogallergic contact dermatitis  ISORGD:7310729068941mRNA:protein:skin:RGDPMID:7876550|REF_RGD_ID:7421586
VEGFADogAlzheimer's disease  ISORGD:7310729068941 RGDPMID:15732116|REF_RGD_ID:1580571
VEGFADogamyotrophic lateral sclerosis  ISORGD:7310729068941 RGDPMID:16410746|REF_RGD_ID:1580568
VEGFADogArteriovenous Fistula  ISORGD:6199919068941protein:increased expression:brain cortex, brain dura mater:RGDPMID:24626343|REF_RGD_ID:8551823
VEGFADogArteriovenous Fistula  ISORGD:7310729068941 RGDPMID:10541235|REF_RGD_ID:8655590
VEGFADogarteriovenous malformations of the brain  ISORGD:7310729068941 RGDPMID:16388189|REF_RGD_ID:1580567
VEGFADogasthma  ISORGD:7310729068941protein:increased expression:sputumRGDPMID:19178538|REF_RGD_ID:6892723
VEGFADogatherosclerosis amelioratesISORGD:7310739068941 RGDPMID:31757932|REF_RGD_ID:242905202
VEGFADogatrial fibrillation  ISORGD:7310729068941mRNA,protein:increased expression:heart:RGDPMID:20631454|REF_RGD_ID:8551825
VEGFADogattention deficit hyperactivity disorder  ISORGD:6199919068941 RGDPMID:15178644|REF_RGD_ID:1580558
VEGFADogautoimmune hepatitis  ISORGD:7310729068941protein:increased expression:plasma:RGDPMID:26615570|REF_RGD_ID:11538286
1 to 20 of 208 rows
Object Symbol
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Original Reference(s)
VEGFADogatherosclerosis  ISORGD:7310728554872ClinVar Annotator: match by term: Atherosclerosis, susceptibility toClinVarPMID:15732116|PMID:15937083|PMID:18413368
VEGFADogcholangiocarcinoma  ISORGD:7310728554872ClinVar Annotator: match by term: CholangiocarcinomaClinVarPMID:18550579
VEGFADogdiabetic angiopathy  ISORGD:7310728554872ClinVar Annotator: match by term: Microvascular complications of diabetes, susceptibility to, 1 | ClinVar Annotator: more ...ClinVarPMID:11978667|PMID:25741868|PMID:28492532
VEGFADoginfantile Refsum disease  ISORGD:7310728554872ClinVar Annotator: match by term: ADRENOLEUKODYSTROPHY, AUTOSOMAL NEONATALClinVarPMID:19877282|PMID:21031596|PMID:28492532|PMID:8670792
VEGFADogProstate Cancer, Hereditary, 1  ISORGD:7310728554872ClinVar Annotator: match by term: Prostate cancer, hereditary, 1ClinVar 
VEGFADogZellweger syndrome  ISORGD:7310728554872ClinVar Annotator: match by term: Peroxisome biogenesis disorders, Zellweger syndrome spectrumClinVarPMID:19877282|PMID:21031596|PMID:28492532|PMID:8670792
1 to 20 of 73 rows
Object Symbol
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Original Reference(s)
VEGFADogacute kidney failure  ISORGD:7310729068941CTD Direct Evidence: marker/mechanism|therapeuticCTDPMID:20943766|PMID:22808199
VEGFADogAcute Lung Injury  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:39233289
VEGFADogadenocarcinoma  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:26432044
VEGFADogAlzheimer's disease  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:15732116
VEGFADogangiosarcoma  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:17569031
VEGFADogasthma  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:11907124|PMID:15201500|PMID:19263519
VEGFADogBrain Hypoxia-Ischemia  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:23694759
VEGFADogBrain Injuries  ISORGD:7310729068941CTD Direct Evidence: therapeuticCTDPMID:18065154
VEGFADogBrain Neoplasms  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:20932960
VEGFADogCerebral Hemorrhage  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:17888890
VEGFADogChemical and Drug Induced Liver Injury  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:25231249
VEGFADogChoroidal Neovascularization  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:16680105
VEGFADogChronic Bronchitis  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:19263519
VEGFADogclear cell renal cell carcinoma  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:25239121
VEGFADogColonic Neoplasms  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:18987561
VEGFADogcongenital heart disease  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:26073000
VEGFADogcongestive heart failure  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:15732037|PMID:15880336
VEGFADogcontact dermatitis  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:25724174
VEGFADogcorneal neovascularization  ISORGD:7310729068941CTD Direct Evidence: marker/mechanismCTDPMID:9301478
VEGFADogcoronary artery disease  ISORGD:7310729068941CTD Direct Evidence: marker/mechanism|therapeuticCTDPMID:14668888|PMID:15937083
1 to 20 of 73 rows
Object Symbol
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Evidence
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Reference
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Source
Original Reference(s)
VEGFADogamyotrophic lateral sclerosis type 1  ISORGD:7310739068941OMIM:105400MouseDO 
VEGFADogDiGeorge syndrome  ISORGD:7310739068941OMIM:188400MouseDO 
VEGFADognewborn respiratory distress syndrome  ISORGD:7310739068941OMIM:267450MouseDO 
VEGFADogpsoriasis  ISORGD:7310739068941 MouseDO 
Object Symbol
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Term
Qualifier
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Reference
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Original Reference(s)
VEGFADogdiabetic angiopathy  ISORGD:7310727240710 OMIM 


Biological Process
1 to 20 of 215 rows

  
Object Symbol
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Original Reference(s)
VEGFADogangiogenesis  ISORGD:6199919068941 RGDPMID:16230500|REF_RGD_ID:1580552
VEGFADogangiogenesis involved_inIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogangiogenesis involved_inISSUniProtKB:P15692150520179 UniProtGO_REF:0000024
VEGFADogangiogenesis involved_inIEAUniProtKB-KW:KW-0037150520179 UniProtGO_REF:0000043
VEGFADogangiogenesis acts_upstream_of_or_withinIEAUniProtKB:Q00731|ensembl:ENSMUSP00000115883150520179 EnsemblGO_REF:0000107
VEGFADogangiogenesis involved in coronary vascular morphogenesis  ISORGD:6199919068941 RGDPMID:11397779|REF_RGD_ID:8655634
VEGFADogapoptotic process acts_upstream_ofIEAUniProtKB:Q00731|ensembl:ENSMUSP00000115883150520179 EnsemblGO_REF:0000107
VEGFADogartery morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q00731|ensembl:ENSMUSP00000115883150520179 EnsemblGO_REF:0000107
VEGFADogbasophil chemotaxis involved_inISORGD:7310729068941 PMID:17082651UniProtPMID:17082651
VEGFADogblood vessel development acts_upstream_of_or_withinIEAUniProtKB:Q00731|ensembl:ENSMUSP00000115883150520179 EnsemblGO_REF:0000107
VEGFADogblood vessel morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q00731|ensembl:ENSMUSP00000115883150520179 EnsemblGO_REF:0000107
VEGFADogblood vessel remodeling  ISORGD:6199919068941 RGDPMID:16203926|REF_RGD_ID:1580556
VEGFADogbone trabecula formation acts_upstream_of_or_withinIEAUniProtKB:Q00731|ensembl:ENSMUSP00000115883150520179 EnsemblGO_REF:0000107
VEGFADogbone trabecula morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q00731|ensembl:ENSMUSP00000115883150520179 EnsemblGO_REF:0000107
VEGFADogbranching involved in blood vessel morphogenesis acts_upstream_of_or_withinISORGD:7310729068941 PMID:23688497BHF-UCLPMID:23688497
VEGFADogbranching involved in blood vessel morphogenesis involved_inIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogcamera-type eye morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q00731|ensembl:ENSMUSP00000115883150520179 EnsemblGO_REF:0000107
VEGFADogcardiac muscle cell development acts_upstream_of_or_withinIEAUniProtKB:Q00731|ensembl:ENSMUSP00000115883150520179 EnsemblGO_REF:0000107
VEGFADogcardiac vascular smooth muscle cell development involved_inISORGD:7310739068941 PMID:18093989BHF-UCLPMID:18093989
VEGFADogcell chemotaxis  ISORGD:6199919068941 RGDPMID:23226762|REF_RGD_ID:7207782
1 to 20 of 215 rows

Cellular Component
1 to 19 of 19 rows

  
Object Symbol
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Reference
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Source
Original Reference(s)
VEGFADogadherens junction located_inIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogbasement membrane  ISORGD:6199919068941 RGDPMID:11940521|REF_RGD_ID:628330
VEGFADogcell surface located_inISSUniProtKB:P15692150520179 UniProtGO_REF:0000024
VEGFADogcell surface located_inIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogcytoplasm located_inISSUniProtKB:P15692150520179 UniProtGO_REF:0000024
VEGFADogcytoplasm located_inIEAUniProtKB:P15692|UniProtKB:Q00731|ensembl:ENSMUSP00000115883|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
VEGFADogextracellular region located_inIEAUniProtKB-SubCell:SL-0243150520179 UniProtGO_REF:0000044
VEGFADogextracellular space  ISORGD:6199919068941 RGDPMID:15034080|REF_RGD_ID:1580562
VEGFADogextracellular space is_active_inIBAMGI:103178|MGI:105095|MGI:108037|MGI:109124|PANTHER:PTN000246442|RGD:619850|RGD:619991|UniProtKB:P15691|UniProtKB:P15692|UniProtKB:P49765150520179 GO_CentralGO_REF:0000033
VEGFADogextracellular space located_inIEAUniProtKB:P15692|UniProtKB:Q00731|ensembl:ENSMUSP00000115883|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogextracellular space located_inISSUniProtKB:P15692150520179 UniProtGO_REF:0000024
VEGFADogextracellular space  ISORGD:6199919068941matrix vesicles - cell derived, extracellular vesicles that are initiation sites of mineralizationRGDPMID:18758911|REF_RGD_ID:2301841
VEGFADogmembrane located_inIEAInterPro:IPR000072150520179 InterProGO_REF:0000002
VEGFADognucleus located_inIEAUniProtKB:Q00731|ensembl:ENSMUSP00000115883150520179 EnsemblGO_REF:0000107
VEGFADogsecretory granule located_inISSUniProtKB:P15692150520179 UniProtGO_REF:0000024
VEGFADogsecretory granule located_inIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogVEGF-A complex part_ofIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogvesicle  ISORGD:6199919068941matrix vesicles - cell derived, extracellular vesicles that are initiation sites of mineralizationRGDPMID:18758911|REF_RGD_ID:2301841
1 to 19 of 19 rows

Molecular Function
1 to 20 of 36 rows

  
Object Symbol
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Original Reference(s)
VEGFADogchemoattractant activity  ISORGD:6199919068941 RGDPMID:23226762|REF_RGD_ID:7207782
VEGFADogchemoattractant activity enablesIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogchemoattractant activity enablesIBAMGI:103178|PANTHER:PTN000246442|RGD:619991|UniProtKB:O43915|UniProtKB:P15692|UniProtKB:P49765|UniProtKB:P49767150520179 GO_CentralGO_REF:0000033
VEGFADogchemoattractant activity enablesISSUniProtKB:P15692150520179 UniProtGO_REF:0000024
VEGFADogcytokine activity enablesISSUniProtKB:P15692150520179 UniProtGO_REF:0000024
VEGFADogcytokine activity enablesIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogfibronectin binding enablesISSUniProtKB:P15692150520179 UniProtGO_REF:0000024
VEGFADogfibronectin binding enablesIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADoggrowth factor activity  ISORGD:6199919068941 RGDPMID:12181492|PMID:16160062|REF_RGD_ID:2301956|REF_RGD_ID:625593
VEGFADoggrowth factor activity enablesIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADoggrowth factor activity enablesIEAInterPro:IPR000072150520179 InterProGO_REF:0000002
VEGFADoggrowth factor activity enablesISSUniProtKB:P15692150520179 UniProtGO_REF:0000024
VEGFADoggrowth factor activity enablesIEAUniProtKB-KW:KW-0339150520179 UniProtGO_REF:0000043
VEGFADoggrowth factor activity enablesIBAMGI:108037|PANTHER:PTN000246442|RGD:619991|UniProtKB:P15691|UniProtKB:P15692|UniProtKB:P49763|ZFIN:ZDB-GENE-990415-273150520179 GO_CentralGO_REF:0000033
VEGFADoggrowth factor binding  ISORGD:34449068941 RGDPMID:17881084|REF_RGD_ID:2292001
VEGFADogheparin binding enablesIEAInterPro:IPR027928|InterPro:IPR036841150520179 InterProGO_REF:0000002
VEGFADogheparin binding enablesIEAUniProtKB:P15692|ensembl:ENSP00000500082150520179 EnsemblGO_REF:0000107
VEGFADogheparin binding enablesIEAUniProtKB-KW:KW-0358150520179 UniProtGO_REF:0000043
VEGFADogheparin binding enablesISSUniProtKB:P15692150520179 UniProtGO_REF:0000024
VEGFADogidentical protein binding  ISORGD:6199919068941homodimerizationRGDPMID:2320579|REF_RGD_ID:634362
1 to 20 of 36 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
VEGFADogaltered vascular endothelial growth factor signaling pathway involving proteins affecting its expression  ISORGD:7310729068941 RGDPMID:18221855|REF_RGD_ID:2292019
VEGFADogaltered vascular endothelial growth factor signaling pathway involving the main players  ISORGD:7310729068941 RGDPMID:18221855|REF_RGD_ID:2292019
VEGFADogphosphatidylinositol 3-kinase-Akt signaling pathway   ISORGD:6199919068941 RGDPMID:17272396|REF_RGD_ID:152177689
VEGFADogvascular endothelial growth factor signaling pathway   ISORGD:6199919068941 RGDPMID:12181492|PMID:15785231|PMID:16160062|PMID:18614764|REF_RGD_ID:1626621|REF_RGD_ID:2301848|REF_RGD_ID:2301956|REF_RGD_ID:625593
VEGFADogvascular endothelial growth factor signaling pathway   ISORGD:7310729068941 RGDPMID:15563310|PMID:16633338|PMID:18221855|REF_RGD_ID:1334463|REF_RGD_ID:2292019|REF_RGD_ID:2298727

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
VEGFADogbevacizumab pharmacodynamics pathway  ISORGD:7310729068941 SMPDBSMP:00420

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
VEGFADogglypican signaling pathway  ISORGD:7310729068941 PIDPID:200026
VEGFADoghypoxia inducible factor pathway   ISORGD:7310729068941 PIDPID:200036|PID:200202
VEGFADogsphingosine 1-phosphate signaling pathway  ISORGD:7310729068941 PIDPID:200046|PID:200085
PMID:10661874   PMID:16496934   PMID:17099154   PMID:17467003   PMID:17888471   PMID:17993509   PMID:18039895   PMID:18429933   PMID:18461467   PMID:18717642   PMID:19057151   PMID:19175733  
PMID:20001231   PMID:20093695   PMID:20230578   PMID:20570280   PMID:20805568   PMID:21366824   PMID:22300704   PMID:22301074   PMID:22489798   PMID:22520817   PMID:23279467   PMID:24976305  
PMID:25041787   PMID:26850540   PMID:27543935   PMID:28956485   PMID:30032202   PMID:31696573   PMID:33348010  



VEGFA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,209,032 - 12,224,978 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,208,231 - 12,224,965 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,235,225 - 12,250,737 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,693,104 - 12,708,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,691,593 - 12,708,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,217,730 - 12,233,243 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,305,204 - 12,320,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,398,451 - 12,413,981 (+)NCBIUU_Cfam_GSD_1.0
VEGFA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,770,211 - 43,786,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,770,184 - 43,786,487 (+)EnsemblGRCh38hg38GRCh38
GRCh37643,737,948 - 43,754,224 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,845,931 - 43,862,202 (+)NCBINCBI36Build 36hg18NCBI36
Build 34643,845,923 - 43,860,314NCBI
Celera645,289,570 - 45,305,849 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,458,106 - 43,474,385 (+)NCBIHuRef
CHM1_1643,741,412 - 43,757,691 (+)NCBICHM1_1
T2T-CHM13v2.0643,599,724 - 43,616,002 (+)NCBIT2T-CHM13v2.0
Vegfa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,327,919 - 46,343,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,327,919 - 46,343,295 (-)EnsemblGRCm39 Ensembl
GRCm381746,016,993 - 46,032,377 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,016,993 - 46,032,369 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,153,942 - 46,169,326 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,480,574 - 45,495,331 (-)NCBIMGSCv36mm8
Celera1749,448,065 - 49,463,499 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.79NCBI
Vegfa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,452,854 - 22,468,194 (+)NCBIGRCr8
mRatBN7.2914,955,300 - 14,970,641 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,955,300 - 14,970,641 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,540,015 - 23,555,341 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,602,643 - 28,617,969 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,903,445 - 26,918,771 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,340,341 - 17,355,681 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,340,341 - 17,355,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,232,415 - 16,247,658 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,520,730 - 10,536,071 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,519,065 - 10,531,506 (+)NCBI
Celera912,701,425 - 12,716,765 (+)NCBICelera
Cytogenetic Map9q12NCBI
Vegfa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554379,527,445 - 9,541,908 (+)NCBIChiLan1.0ChiLan1.0
VEGFA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,269,186 - 58,285,503 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1654,138,950 - 54,155,259 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,361,053 - 43,377,366 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,651,855 - 44,666,353 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,650,365 - 44,666,353 (+)Ensemblpanpan1.1panPan2
Vegfa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,698,881 - 47,715,068 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,247,100 - 16,260,673 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,245,134 - 16,261,180 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VEGFA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,746,052 - 38,761,366 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,746,393 - 38,762,282 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,459,821 - 44,475,711 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VEGFA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,377,959 - 28,394,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604443,823,884 - 43,842,951 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vegfa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475415,929,414 - 15,943,637 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in VEGFA
111 total Variants



adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10


1 to 18 of 18 rows
RefSeq Transcripts NM_001003175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF133248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF133249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF133250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ133758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX009700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN349636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN427836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN441081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN877014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN877015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 18 of 18 rows

Ensembl Acc Id: ENSCAFT00000003061   ⟹   ENSCAFP00000002842
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1212,208,231 - 12,224,965 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000003063   ⟹   ENSCAFP00000002844
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1212,208,231 - 12,224,965 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000049819   ⟹   ENSCAFP00000041911
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1212,208,231 - 12,224,965 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000063883   ⟹   ENSCAFP00000045844
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1212,208,231 - 12,223,072 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000075439   ⟹   ENSCAFP00000062329
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1212,208,231 - 12,223,072 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845018561   ⟹   ENSCAFP00845014480
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1212,691,593 - 12,708,601 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845018637   ⟹   ENSCAFP00845014544
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1212,692,538 - 12,708,601 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845018694   ⟹   ENSCAFP00845014594
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1212,692,538 - 12,707,133 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845018734   ⟹   ENSCAFP00845014626
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1212,692,538 - 12,707,133 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845018769   ⟹   ENSCAFP00845014653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1212,696,046 - 12,708,601 (+)Ensembl
RefSeq Acc Id: NM_001003175   ⟹   NP_001003175
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11212,209,032 - 12,224,978 (+)NCBI
Dog10K_Boxer_Tasha1212,235,225 - 12,250,737 (+)NCBI
ROS_Cfam_1.01212,693,104 - 12,708,614 (+)NCBI
UMICH_Zoey_3.11212,217,730 - 12,233,243 (+)NCBI
UNSW_CanFamBas_1.01212,305,204 - 12,320,707 (+)NCBI
UU_Cfam_GSD_1.01212,398,451 - 12,413,981 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001110501   ⟹   NP_001103971
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11212,209,032 - 12,224,978 (+)NCBI
Dog10K_Boxer_Tasha1212,235,225 - 12,250,737 (+)NCBI
ROS_Cfam_1.01212,693,104 - 12,708,614 (+)NCBI
UMICH_Zoey_3.11212,217,730 - 12,233,243 (+)NCBI
UNSW_CanFamBas_1.01212,305,204 - 12,320,707 (+)NCBI
UU_Cfam_GSD_1.01212,398,451 - 12,413,981 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001110502   ⟹   NP_001103972
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11212,209,032 - 12,224,978 (+)NCBI
Dog10K_Boxer_Tasha1212,235,225 - 12,250,737 (+)NCBI
ROS_Cfam_1.01212,693,104 - 12,708,614 (+)NCBI
UMICH_Zoey_3.11212,217,730 - 12,233,243 (+)NCBI
UNSW_CanFamBas_1.01212,305,204 - 12,320,707 (+)NCBI
UU_Cfam_GSD_1.01212,398,451 - 12,413,981 (+)NCBI
Sequence:
Protein RefSeqs NP_001003175 (Get FASTA)   NCBI Sequence Viewer  
  NP_001103971 (Get FASTA)   NCBI Sequence Viewer  
  NP_001103972 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD29682 (Get FASTA)   NCBI Sequence Viewer  
  AAD29683 (Get FASTA)   NCBI Sequence Viewer  
  AAD29684 (Get FASTA)   NCBI Sequence Viewer  
  CAB82426 (Get FASTA)   NCBI Sequence Viewer  
  Q9MYV3 (Get FASTA)   NCBI Sequence Viewer  
1 to 5 of 13 rows
1 to 5 of 13 rows
RefSeq Acc Id: NP_001003175   ⟸   NM_001003175
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A8C0KID2 (UniProtKB/TrEMBL),   A0A8C0S3J2 (UniProtKB/TrEMBL),   A0A8I3RVW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103971   ⟸   NM_001110501
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9XSF5 (UniProtKB/Swiss-Prot),   Q9XSF4 (UniProtKB/Swiss-Prot),   Q9XSF3 (UniProtKB/Swiss-Prot),   Q9MYV3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001103972   ⟸   NM_001110502
- Peptide Label: isoform 3 precursor
- UniProtKB: Q9XSF5 (UniProtKB/Swiss-Prot),   Q9XSF4 (UniProtKB/Swiss-Prot),   Q9XSF3 (UniProtKB/Swiss-Prot),   Q9MYV3 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSCAFP00000041911   ⟸   ENSCAFT00000049819
Ensembl Acc Id: ENSCAFP00000045844   ⟸   ENSCAFT00000063883
Platelet-derived growth factor (PDGF) family

RGD ID:13685442
Promoter ID:EPDNEW_C3511
Type:single initiation site
Name:VEGFA_1
Description:vascular endothelial growth factor A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11212,208,216 - 12,208,276EPDNEW


1 to 40 of 44 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00000001938 Ensembl
  ENSCAFG00845010533 Ensembl
Gene3D-CATH 2.10.160.10 UniProtKB/Swiss-Prot
  2.10.90.10 UniProtKB/Swiss-Prot
InterPro Cystine-knot_cytokine UniProtKB/Swiss-Prot
  PD_growth_factor_CS UniProtKB/Swiss-Prot
  PDGF/VEGF_dom UniProtKB/Swiss-Prot
  PDGF/VEGF_growth_factor UniProtKB/Swiss-Prot
  VEGF_C UniProtKB/Swiss-Prot
  VEGF_C_sf UniProtKB/Swiss-Prot
KEGG Report cfa:403802 UniProtKB/Swiss-Prot
NCBI Gene VEGFA ENTREZGENE
PANTHER VASCULAR ENDOTHELIAL GROWTH FACTOR UniProtKB/Swiss-Prot
  VASCULAR ENDOTHELIAL GROWTH FACTOR A UniProtKB/Swiss-Prot
Pfam PDGF UniProtKB/Swiss-Prot
  VEGF_C UniProtKB/Swiss-Prot
PROSITE PDGF_1 UniProtKB/Swiss-Prot
  PDGF_2 UniProtKB/Swiss-Prot
SMART PDGF UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot
  SSF57593 UniProtKB/Swiss-Prot
UniProt A0A8C0KID2 ENTREZGENE
  A0A8C0S3J2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S4F6_CANLF UniProtKB/TrEMBL
  A0A8I3NGI3_CANLF UniProtKB/TrEMBL
  A0A8I3NRV8_CANLF UniProtKB/TrEMBL
  A0A8I3RVV6_CANLF UniProtKB/TrEMBL
  A0A8I3RVW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RVY3_CANLF UniProtKB/TrEMBL
  A0A8P0NSP1_CANLF UniProtKB/TrEMBL
  A0A8P0NW12_CANLF UniProtKB/TrEMBL
  A0A8P0PB78_CANLF UniProtKB/TrEMBL
  A0A8P0PHV8_CANLF UniProtKB/TrEMBL
  A0A8P0S7T9_CANLF UniProtKB/TrEMBL
  A0A8P0S852_CANLF UniProtKB/TrEMBL
  Q9MYV3 ENTREZGENE
  Q9XSF3 ENTREZGENE
  Q9XSF4 ENTREZGENE
  Q9XSF5 ENTREZGENE
  VEGFA_CANLF UniProtKB/Swiss-Prot
1 to 40 of 44 rows