Pam (peptidylglycine alpha-amidating monooxygenase) - Rat Genome Database

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Gene: Pam (peptidylglycine alpha-amidating monooxygenase) Mus musculus
Analyze
Symbol: Pam
Name: peptidylglycine alpha-amidating monooxygenase
RGD ID: 11056
MGI Page MGI
Description: Predicted to enable several functions, including metal ion binding activity; peptidylamidoglycolate lyase activity; and peptidylglycine monooxygenase activity. Predicted to be involved in several processes, including fatty acid primary amide biosynthetic process; peptide amidation; and response to zinc ion. Predicted to be located in several cellular components, including perikaryon; secretory granule membrane; and trans-Golgi network. Predicted to be active in extracellular region. Is expressed in several structures, including alimentary system; central nervous system; forelimb bud; limb interdigital region; and sensory organ. Orthologous to human PAM (peptidylglycine alpha-amidating monooxygenase); PARTICIPATES IN melanocortin system pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: peptidyl-glycine alpha-amidating monooxygenase; PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE PRECURSOR (PAM); PH; PHM
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,748,816 - 98,023,578 (-)NCBIGRCm39mm39
GRCm39 Ensembl197,722,839 - 98,023,371 (-)Ensembl
GRCm38197,821,091 - 98,095,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,795,114 - 98,095,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv37199,717,671 - 99,992,209 (-)NCBIGRCm37mm9NCBIm37
MGSCv36199,651,500 - 99,925,919 (-)NCBImm8
Celera1100,701,674 - 100,975,784 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
cadmium dichloride  (ISO)
chloropicrin  (ISO)
choline  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (EXP,ISO)
disulfiram  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
flutamide  (ISO)
folic acid  (EXP,ISO)
fonofos  (ISO)
formaldehyde  (ISO)
furan  (ISO)
glafenine  (ISO)
irinotecan  (ISO)
L-methionine  (EXP)
menadione  (ISO)
methyl methanesulfonate  (ISO)
mifepristone  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP)
parathion  (ISO)
pentetrazol  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
reserpine  (ISO)
S-nitroso-N-acetyl-D-penicillamine  (ISO)
selenium atom  (ISO)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
topotecan  (ISO)
triclosan  (ISO)
triptonide  (EXP)
urethane  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7873888   PMID:8672144   PMID:8910496   PMID:8938438   PMID:10219055   PMID:10349636   PMID:11028916   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12748967  
PMID:15629125   PMID:15745951   PMID:16141072   PMID:16141073   PMID:16225857   PMID:16325307   PMID:16465591   PMID:17005911   PMID:18554416   PMID:19554387   PMID:19815072   PMID:19954489  
PMID:20573687   PMID:20648645   PMID:20943906   PMID:21267068   PMID:21677750   PMID:21873192   PMID:21873635   PMID:22194882   PMID:24032518   PMID:24200680   PMID:24593825   PMID:25391964  
PMID:26170456   PMID:26238476   PMID:26296884   PMID:27899360   PMID:28513435   PMID:29540787   PMID:30317586   PMID:30550785   PMID:31455734   PMID:31984442   PMID:32325033   PMID:32581705  
PMID:32661174  


Genomics

Comparative Map Data
Pam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,748,816 - 98,023,578 (-)NCBIGRCm39mm39
GRCm39 Ensembl197,722,839 - 98,023,371 (-)Ensembl
GRCm38197,821,091 - 98,095,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,795,114 - 98,095,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv37199,717,671 - 99,992,209 (-)NCBIGRCm37mm9NCBIm37
MGSCv36199,651,500 - 99,925,919 (-)NCBImm8
Celera1100,701,674 - 100,975,784 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.76NCBI
PAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5102,753,981 - 103,029,730 (+)EnsemblGRCh38hg38GRCh38
GRCh385102,754,783 - 103,031,105 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375102,090,487 - 102,366,809 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365102,229,426 - 102,393,316 (+)NCBINCBI36hg18NCBI36
Build 345102,229,425 - 102,393,315NCBI
Celera598,149,342 - 98,314,632 (+)NCBI
Cytogenetic Map5q21.1NCBI
HuRef597,382,969 - 97,548,060 (+)NCBIHuRef
CHM1_15101,633,901 - 101,799,441 (+)NCBICHM1_1
Pam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2997,998,581 - 98,271,966 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl998,122,916 - 98,271,965 (+)Ensembl
Rnor_6.09111,028,543 - 111,177,588 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9111,028,575 - 111,177,602 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09110,584,141 - 110,737,487 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4996,893,071 - 97,047,523 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1997,102,550 - 97,257,003 (+)NCBI
Celera995,564,414 - 95,713,546 (+)NCBICelera
Cytogenetic Map9q37NCBI
Pam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541810,953,696 - 11,107,667 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541810,953,044 - 11,107,668 (-)NCBIChiLan1.0ChiLan1.0
PAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15103,803,846 - 104,085,774 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5103,913,456 - 104,085,774 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0598,104,058 - 98,385,157 (+)NCBIMhudiblu_PPA_v0panPan3
PAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138,141,508 - 8,312,081 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38,142,061 - 8,290,477 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha39,543,047 - 9,693,485 (-)NCBI
ROS_Cfam_1.038,029,782 - 8,180,284 (-)NCBI
UMICH_Zoey_3.137,970,219 - 8,120,392 (-)NCBI
UNSW_CanFamBas_1.037,988,856 - 8,139,107 (-)NCBI
UU_Cfam_GSD_1.038,148,827 - 8,299,174 (-)NCBI
Pam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213163,307,429 - 163,485,516 (-)NCBI
SpeTri2.0NW_0049365231,492,795 - 1,786,942 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2108,255,930 - 108,536,881 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12108,255,923 - 108,536,192 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22112,397,471 - 112,553,945 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1236,316,428 - 6,482,959 (+)NCBI
ChlSab1.1 Ensembl236,316,428 - 6,486,751 (+)Ensembl
Vero_WHO_p1.0NW_0236660367,849,169 - 8,133,685 (-)NCBI
Pam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474320,834,664 - 21,178,933 (+)NCBI

Position Markers
U79523  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38197,821,655 - 97,821,743UniSTSGRCm38
MGSCv37199,718,232 - 99,718,320UniSTSGRCm37
Celera1100,702,235 - 100,702,323UniSTS
Cytogenetic Map1DUniSTS
cM Map157.5UniSTS
Whitehead/MRC_RH11340.64UniSTS
BB187771  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,045,834 - 98,045,943UniSTSGRCm38
MGSCv37199,942,411 - 99,942,520UniSTSGRCm37
Celera1100,925,905 - 100,926,014UniSTS
Cytogenetic Map1DUniSTS
cM Map157.5UniSTS
Whitehead/MRC_RH11335.54UniSTS
UniSTS:234182  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,054,122 - 98,054,210UniSTSGRCm38
MGSCv37199,950,699 - 99,950,787UniSTSGRCm37
Celera1100,934,194 - 100,934,282UniSTS
Cytogenetic Map1DUniSTS
cM Map157.5UniSTS
UniSTS:225022  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38197,900,096 - 97,900,268UniSTSGRCm38
MGSCv37199,796,673 - 99,796,845UniSTSGRCm37
Celera1100,780,773 - 100,780,945UniSTS
Cytogenetic Map1DUniSTS
cM Map157.5UniSTS
Pam  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1DUniSTS
cM Map157.5UniSTS
Pam  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1DUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134721057150318120Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134721057150318120Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134721057150318120Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139093727126517573Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162907596120601949Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163880843153681816Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167300000129800000Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170205811104211835Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173227055108910684Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73687970107688108Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173687970107688108Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173716016147249632Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74477076148839837Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174952818133363199Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)176000000128600000Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)176000000148900000Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177146478110608345Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179930958113931066Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179930958113931066Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180267876126458780Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782314261147249632Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182665468135687641Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182904910116904910Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182904910116904910Mouse
11667074Led2_mlate embryonic death 2 (mouse)185768306117267351Mouse
12790991Aath1_maortic arch atherosclerosis 1 (mouse)186556204120556204Mouse
4141329Mleu1_mmyeloid leukemia survival 1 (mouse)Not determined89858782123858782Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189858782123858782Mouse
4141347Reb1_mrepetitive behavior 1 (mouse)Not determined91540544100485942Mouse
1357760Synch3_msynechia 3 (mouse)Not determined192973712126973820Mouse
4141627Bwq7_mbody weight, QTL 7 (mouse)Not determined193013187124570059Mouse
12879491Hfnq1_mhair follicle number QTL 1 (mouse)193382588123709030Mouse
10045976Tir6_mtrypanosome infection response 6 (mouse)Not determined193609133120601949Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194200000148900000Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194200000172200000Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195600000162200000Mouse
1301123Cd8mts2_mCD8 memory T cell subset 2 (mouse)Not determined196690656130690827Mouse
1301753Tir3a_mtrypansomiasis infection response 3a (mouse)Not determined197126256131126460Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1455
Count of miRNA genes:611
Interacting mature miRNAs:748
Transcripts:ENSMUST00000058762, ENSMUST00000097625, ENSMUST00000159041, ENSMUST00000159131, ENSMUST00000159428, ENSMUST00000159585, ENSMUST00000159841, ENSMUST00000160210, ENSMUST00000161071, ENSMUST00000161567, ENSMUST00000162426, ENSMUST00000162681, ENSMUST00000162803, ENSMUST00000163007
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB662851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY467506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U79523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000058762   ⟹   ENSMUSP00000057112
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,748,819 - 98,023,346 (-)Ensembl
GRCm38.p6 Ensembl197,821,094 - 98,095,621 (-)Ensembl
RefSeq Acc Id: ENSMUST00000097625   ⟹   ENSMUSP00000095228
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,748,820 - 98,023,357 (-)Ensembl
GRCm38.p6 Ensembl197,821,095 - 98,095,632 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159041   ⟹   ENSMUSP00000124284
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,722,839 - 97,768,536 (-)Ensembl
GRCm38.p6 Ensembl197,795,114 - 97,840,811 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159131
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,765,257 - 97,768,116 (-)Ensembl
GRCm38.p6 Ensembl197,837,532 - 97,840,391 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159428
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,861,196 - 97,904,793 (-)Ensembl
GRCm38.p6 Ensembl197,933,471 - 97,977,068 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159585
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,749,706 - 97,762,372 (-)Ensembl
GRCm38.p6 Ensembl197,821,981 - 97,834,647 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159841   ⟹   ENSMUSP00000124479
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,782,359 - 97,822,121 (-)Ensembl
GRCm38.p6 Ensembl197,854,634 - 97,894,396 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160210
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,750,449 - 97,753,710 (-)Ensembl
GRCm38.p6 Ensembl197,822,724 - 97,825,985 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161071
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,780,650 - 97,792,189 (-)Ensembl
GRCm38.p6 Ensembl197,852,925 - 97,864,464 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161567   ⟹   ENSMUSP00000125418
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,748,825 - 97,904,980 (-)Ensembl
GRCm38.p6 Ensembl197,821,100 - 97,977,255 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162426
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,885,121 - 97,904,969 (-)Ensembl
GRCm38.p6 Ensembl197,957,396 - 97,977,244 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162681   ⟹   ENSMUSP00000125133
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,749,446 - 97,768,114 (-)Ensembl
GRCm38.p6 Ensembl197,821,721 - 97,840,389 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162803
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,753,384 - 97,768,606 (-)Ensembl
GRCm38.p6 Ensembl197,825,659 - 97,840,881 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163007
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,985,698 - 98,023,371 (-)Ensembl
GRCm38.p6 Ensembl198,057,973 - 98,095,646 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186731
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,981,715 - 97,985,608 (-)Ensembl
GRCm38.p6 Ensembl198,053,990 - 98,057,883 (-)Ensembl
RefSeq Acc Id: NM_001357127   ⟹   NP_001344056
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 98,023,371 (-)NCBI
GRCm38197,821,094 - 98,095,646 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013626   ⟹   NP_038654
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 98,023,357 (-)NCBI
GRCm38197,821,094 - 98,095,632 (-)NCBI
MGSCv37199,717,671 - 99,992,209 (-)RGD
Celera1100,701,674 - 100,975,784 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529243   ⟹   XP_006529306
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,578 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247937   ⟹   XP_011246239
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247938   ⟹   XP_011246240
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247939   ⟹   XP_011246241
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319282   ⟹   XP_017174771
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 97,905,497 (-)NCBI
GRCm38197,821,091 - 97,977,772 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319284   ⟹   XP_017174773
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319286   ⟹   XP_017174775
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319289   ⟹   XP_017174778
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319290   ⟹   XP_017174779
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252162   ⟹   XP_030108022
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,377 (-)NCBI
GRCm38197,821,091 - 98,095,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252165   ⟹   XP_030108025
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,377 (-)NCBI
GRCm38197,821,091 - 98,095,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252167   ⟹   XP_030108027
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 97,906,103 (-)NCBI
GRCm38197,821,091 - 97,978,378 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252177   ⟹   XP_030108037
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 97,905,502 (-)NCBI
GRCm38197,821,091 - 97,977,777 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252184   ⟹   XP_030108044
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,749,206 - 98,023,371 (-)NCBI
GRCm38197,821,481 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252185   ⟹   XP_030108045
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,578 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252186   ⟹   XP_030108046
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,578 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252187   ⟹   XP_030108047
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,578 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252190   ⟹   XP_030108050
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,578 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162772   ⟹   XP_036018665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,393 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001344056 (Get FASTA)   NCBI Sequence Viewer  
  NP_038654 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529306 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246239 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246240 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246241 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174771 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174773 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174775 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174778 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174779 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108022 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108025 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108027 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108037 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108044 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108045 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108046 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108047 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108050 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018665 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB38364 (Get FASTA)   NCBI Sequence Viewer  
  AAI29870 (Get FASTA)   NCBI Sequence Viewer  
  BAC34705 (Get FASTA)   NCBI Sequence Viewer  
  BAE21243 (Get FASTA)   NCBI Sequence Viewer  
  EDL39893 (Get FASTA)   NCBI Sequence Viewer  
  P97467 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_038654   ⟸   NM_013626
- Peptide Label: isoform 1 precursor
- UniProtKB: P97467 (UniProtKB/Swiss-Prot),   A1L331 (UniProtKB/TrEMBL),   F8VQA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529306   ⟸   XM_006529243
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011246241   ⟸   XM_011247939
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011246240   ⟸   XM_011247938
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011246239   ⟸   XM_011247937
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017174778   ⟸   XM_017319289
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017174775   ⟸   XM_017319286
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017174773   ⟸   XM_017319284
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017174779   ⟸   XM_017319290
- Peptide Label: isoform X8
- UniProtKB: E9Q704 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174771   ⟸   XM_017319282
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030108050   ⟸   XM_030252190
- Peptide Label: isoform X13
RefSeq Acc Id: XP_030108047   ⟸   XM_030252187
- Peptide Label: isoform X12
RefSeq Acc Id: XP_030108046   ⟸   XM_030252186
- Peptide Label: isoform X11
RefSeq Acc Id: XP_030108045   ⟸   XM_030252185
- Peptide Label: isoform X10
RefSeq Acc Id: XP_030108022   ⟸   XM_030252162
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108025   ⟸   XM_030252165
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108027   ⟸   XM_030252167
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108037   ⟸   XM_030252177
- Peptide Label: isoform X7
RefSeq Acc Id: NP_001344056   ⟸   NM_001357127
- Peptide Label: isoform 2 precursor
RefSeq Acc Id: XP_030108044   ⟸   XM_030252184
- Peptide Label: isoform X9
RefSeq Acc Id: ENSMUSP00000124284   ⟸   ENSMUST00000159041
RefSeq Acc Id: ENSMUSP00000124479   ⟸   ENSMUST00000159841
RefSeq Acc Id: ENSMUSP00000125133   ⟸   ENSMUST00000162681
RefSeq Acc Id: ENSMUSP00000095228   ⟸   ENSMUST00000097625
RefSeq Acc Id: ENSMUSP00000057112   ⟸   ENSMUST00000058762
RefSeq Acc Id: ENSMUSP00000125418   ⟸   ENSMUST00000161567
RefSeq Acc Id: XP_036018665   ⟸   XM_036162772
- Peptide Label: isoform X1
Protein Domains
Cu2_monoox_C   Cu2_monooxygen

Promoters
RGD ID:6874614
Promoter ID:EPDNEW_M758
Type:initiation region
Name:Pam_1
Description:Mus musculus peptidylglycine alpha-amidating monooxygenase ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M760  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38197,977,218 - 97,977,278EPDNEW
RGD ID:6874618
Promoter ID:EPDNEW_M760
Type:initiation region
Name:Pam_2
Description:Mus musculus peptidylglycine alpha-amidating monooxygenase ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M758  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38198,095,613 - 98,095,673EPDNEW
RGD ID:6818212
Promoter ID:MM_KWN:1754
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:UC007CFQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36199,791,346 - 99,791,846 (-)MPROMDB
RGD ID:6818211
Promoter ID:MM_KWN:1756
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Lung,   MEF_B6
Transcripts:UC007CFR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36199,873,516 - 99,874,016 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97475 AgrOrtholog
Ensembl Genes ENSMUSG00000026335 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000057112 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000095228 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000124284 UniProtKB/TrEMBL
  ENSMUSP00000124479 UniProtKB/TrEMBL
  ENSMUSP00000125133 UniProtKB/TrEMBL
  ENSMUSP00000125418 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000058762 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000097625 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000159041 UniProtKB/TrEMBL
  ENSMUST00000159841 UniProtKB/TrEMBL
  ENSMUST00000161567 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000162681 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.120.230 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.120.310 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu2_ascorb_mOase-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu2_ascorb_mOase_CS-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu2_ascorb_mOase_CS-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu2_ascorb_mOase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu2_ascorb_mOase_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu2_monoox_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NHL_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NHL_repeat_subgr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHM/PAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHM/PNGase_F_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18484 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97475 ENTREZGENE
NCBI Gene 18484 ENTREZGENE
Pfam Cu2_monoox_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu2_monooxygen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NHL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pam PhenoGen
PRINTS PAMONOXGNASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CU2_MONOOXYGENASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CU2_MONOOXYGENASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NHL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49742 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A1L331 ENTREZGENE, UniProtKB/TrEMBL
  AMD_MOUSE UniProtKB/Swiss-Prot
  E9Q704 ENTREZGENE, UniProtKB/TrEMBL
  F6T0D3_MOUSE UniProtKB/TrEMBL
  F6TGI4_MOUSE UniProtKB/TrEMBL
  F7D4K4_MOUSE UniProtKB/TrEMBL
  F8VQA4 ENTREZGENE, UniProtKB/TrEMBL
  P97467 ENTREZGENE
  Q3V1A8_MOUSE UniProtKB/TrEMBL
  Q8BQ31_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9QL07 UniProtKB/Swiss-Prot