Pam (peptidylglycine alpha-amidating monooxygenase) - Rat Genome Database

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Gene: Pam (peptidylglycine alpha-amidating monooxygenase) Mus musculus
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Symbol: Pam
Name: peptidylglycine alpha-amidating monooxygenase
RGD ID: 11056
MGI Page MGI
Description: Predicted to enable several functions, including metal ion binding activity; peptidylamidoglycolate lyase activity; and peptidylglycine monooxygenase activity. Predicted to be involved in several processes, including fatty acid primary amide biosynthetic process; peptide amidation; and response to zinc ion. Predicted to be located in several cellular components, including perikaryon; secretory granule membrane; and trans-Golgi network. Predicted to be active in extracellular region. Is expressed in several structures, including alimentary system; central nervous system; forelimb bud; limb interdigital region; and sensory organ. Orthologous to human PAM (peptidylglycine alpha-amidating monooxygenase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: peptidyl-glycine alpha-amidating monooxygenase; PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE PRECURSOR (PAM); PH; PHM
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,748,816 - 98,023,578 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,722,839 - 98,023,371 (-)EnsemblGRCm39 Ensembl
GRCm38197,821,091 - 98,095,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,795,114 - 98,095,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv37199,717,671 - 99,992,209 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36199,651,500 - 99,925,919 (-)NCBIMGSCv36mm8
Celera1100,701,674 - 100,975,784 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
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Original Reference(s)
PamMouseBrain Hypoxia  ISOPam (Rattus norvegicus)6483514protein:increased activity:brain stem (rat)RGD 
PamMouseExperimental Arthritis  ISOPam (Rattus norvegicus)6483527 RGD 
PamMouseHyperplasia  ISOPam (Rattus norvegicus)6483575protein:increased expression:lung and alveolus (rat)RGD 
PamMousehypothyroidism  ISOPam (Rattus norvegicus)2302427mRNA:increased stability:pituitary glandRGD 
PamMouseprostate adenocarcinoma  ISOPAM (Homo sapiens)6483769mRNA:increased expression:prostate gland (human)RGD 
Object Symbol
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Original Reference(s)
PamMousefamilial adenomatous polyposis 1  ISOPAM (Homo sapiens)8554872ClinVar Annotator: match by term: Familial adenomatous polyposis 1ClinVarPMID:17963004 more ...
PamMouseHereditary Neoplastic Syndromes  ISOPAM (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary cancer-predisposing syndromeClinVarPMID:18487285 more ...
PamMouseHereditary Neoplastic Syndromes  ISOPAM (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary cancer-predisposing syndromeClinVarPMID:17963004 more ...
PamMouseNeurodevelopmental Disorders  ISOPAM (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
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Original Reference(s)
PamMouseanxiety disorder  ISOPAM (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19815072
PamMousetype 2 diabetes mellitus  ISOPAM (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24464100 and PMID:30054598

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Original Reference(s)
PamMouse(R)-noradrenaline increases expressionISOPam (Rattus norvegicus)6480464Norepinephrine results in increased expression of PAM mRNACTDPMID:14618266
PamMouse1,2-dimethylhydrazine increases expressionEXP 64804641 and 2-Dimethylhydrazine results in increased expression of PAM mRNACTDPMID:22206623
PamMouse1-naphthyl isothiocyanate increases expressionISOPam (Rattus norvegicus)64804641-Naphthylisothiocyanate results in increased expression of PAM mRNACTDPMID:12832660
PamMouse17alpha-ethynylestradiol decreases expressionISOPam (Rattus norvegicus)6480464Ethinyl Estradiol results in decreased expression of PAM mRNACTDPMID:15576828 and PMID:17557909
PamMouse17beta-estradiol multiple interactionsISOPAM (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of PAM mRNACTDPMID:19619570
PamMouse17beta-estradiol increases expressionISOPAM (Homo sapiens)6480464Estradiol results in increased expression of PAM mRNACTDPMID:19619570 and PMID:21185374
PamMouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOPAM (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of PAM mRNACTDPMID:19619570
PamMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPam (Rattus norvegicus)6480464Tetrachlorodibenzodioxin affects the expression of PAM mRNACTDPMID:34747641
PamMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOPam (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of PAM mRNACTDPMID:32109520
PamMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of PAM mRNACTDPMID:21570461
PamMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOPAM (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of PAM mRNACTDPMID:19619570
PamMouse2,3,7,8-Tetrachlorodibenzofuran increases expressionISOPam (Rattus norvegicus)64804642 more ...CTDPMID:32109520
PamMouse2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionEXP 64804642 more ...CTDPMID:38648751
PamMouse3H-1,2-dithiole-3-thione decreases expressionISOPam (Rattus norvegicus)64804641 and 2-dithiol-3-thione results in decreased expression of PAM mRNACTDPMID:19162173
PamMouse4,4'-diaminodiphenylmethane decreases expressionEXP 64804644 and 4'-diaminodiphenylmethane results in decreased expression of PAM mRNACTDPMID:18648102
PamMouse6-propyl-2-thiouracil decreases expressionISOPam (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of PAM mRNACTDPMID:30047161 and PMID:36843608
PamMouseacetamide increases expressionISOPam (Rattus norvegicus)6480464acetamide results in increased expression of PAM mRNACTDPMID:31881176
PamMouseacrolein multiple interactionsISOPAM (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of PAM mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of PAM mRNACTDPMID:32699268
PamMouseacrylamide decreases expressionISOPam (Rattus norvegicus)6480464Acrylamide results in decreased expression of PAM mRNACTDPMID:28959563
PamMouseaflatoxin B1 increases expressionISOPAM (Homo sapiens)6480464Aflatoxin B1 results in increased expression of PAM mRNACTDPMID:27153756

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Biological Process
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Original Reference(s)
PamMousefatty acid primary amide biosynthetic process involved_inISSUniProtKB:P149252290270 UniProtGO_REF:0000024
PamMousefatty acid primary amide biosynthetic process involved_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMouseheart development  ISOPam (Rattus norvegicus)9068941 RGDPMID:9441675 and REF_RGD_ID:2302426
PamMouselactation  ISOPam (Rattus norvegicus)9068941 RGDPMID:16448835 and REF_RGD_ID:2302418
PamMouselimb development  ISOPam (Rattus norvegicus)9068941 RGDPMID:9441675 and REF_RGD_ID:2302426
PamMouselong-chain fatty acid metabolic process  ISOPam (Rattus norvegicus)9068941N-myristoylglycineRGDPMID:8660675 and REF_RGD_ID:6483540
PamMouselong-chain fatty acid metabolic process involved_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMousematernal process involved in female pregnancy  ISOPam (Rattus norvegicus)9068941postimplantation uterusRGDPMID:9441675 and REF_RGD_ID:2302426
PamMousemitotic chromosome condensation acts_upstream_of_or_withinISOPAM (Homo sapiens)9068941 PMID:10601332MGIPMID:10601332
PamMouseovulation cycle process  ISOPam (Rattus norvegicus)9068941 RGDPMID:9618561 and REF_RGD_ID:2302425
PamMousepeptide amidation involved_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMousepeptide amidation involved_inISOUniProtKB:P190212290270 GO_CentralGO_REF:0000119
PamMousepeptide amidation  ISOPam (Rattus norvegicus)9068941 RGDPMID:2999151 and REF_RGD_ID:6483598
PamMousepeptide amidation involved_inISSUniProtKB:P149252290270 UniProtGO_REF:0000024
PamMousepeptide metabolic process  ISOPam (Rattus norvegicus)9068941 RGDPMID:18818385 and REF_RGD_ID:6483514
PamMousepeptide metabolic process involved_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMousepeptide metabolic process acts_upstream_of_or_withinTAS 2290270 PMID:10219055MGIPMID:10219055
PamMouseregulation of actin cytoskeleton organization  ISOPam (Rattus norvegicus)9068941 RGDPMID:11251076 and REF_RGD_ID:6483597
PamMouseregulation of actin cytoskeleton organization involved_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMouseregulation of transcription by RNA polymerase II  ISOPam (Rattus norvegicus)9068941 RGDPMID:20573687 and REF_RGD_ID:6483496
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Cellular Component
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Original Reference(s)
PamMousecell surface  ISOPam (Rattus norvegicus)9068941 RGDPMID:15905171 and REF_RGD_ID:6483550
PamMousecell surface located_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMousechromatin located_inISOPAM (Homo sapiens)9068941 PMID:10601332MGIPMID:10601332
PamMousecondensed chromosome located_inISOPAM (Homo sapiens)9068941 PMID:10601332MGIPMID:10601332
PamMousecytosol located_inTAS 2290270 PMID:10219055MGIPMID:10219055
PamMouseextracellular region is_active_inIBAPANTHER:PTN000840899 more ...2290270 GO_CentralGO_REF:0000033
PamMouseextracellular space located_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMouseextracellular space  ISOPam (Rattus norvegicus)9068941 RGDPMID:16448835 and REF_RGD_ID:2302418
PamMouseneuronal cell body  ISOPam (Rattus norvegicus)9068941 RGDPMID:20202202 and REF_RGD_ID:6483511
PamMouseneuronal cell body located_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMouseperikaryon located_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMouseperikaryon  ISOPam (Rattus norvegicus)9068941 RGDPMID:8910496 and REF_RGD_ID:728662
PamMouseperinuclear region of cytoplasm  ISOPam (Rattus norvegicus)9068941 RGDPMID:8663411 and REF_RGD_ID:6483562
PamMouseperinuclear region of cytoplasm located_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMouseplasma membrane located_inTAS 2290270 PMID:10219055MGIPMID:10219055
PamMousesecretory granule  ISOPam (Rattus norvegicus)9068941 RGDPMID:15539631 and REF_RGD_ID:2302421
PamMousesecretory granule located_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMousesecretory granule membrane located_inISSUniProtKB:P107312290270 UniProtGO_REF:0000024
PamMousetrans-Golgi network  ISOPam (Rattus norvegicus)9068941 RGDPMID:20573687 and REF_RGD_ID:6483496
PamMousetrans-Golgi network located_inISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
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Molecular Function
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Original Reference(s)
PamMousecalcium ion binding enablesISSUniProtKB:P149252290270 UniProtGO_REF:0000024
PamMousecalcium ion binding  ISOPam (Rattus norvegicus)9068941 RGDPMID:19604476 and REF_RGD_ID:6483513
PamMousecalcium ion binding enablesISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMousechromatin binding enablesISOPAM (Homo sapiens)9068941 PMID:10601332MGIPMID:10601332
PamMousecopper ion binding  ISOPam (Rattus norvegicus)9068941 RGDPMID:16931045 and REF_RGD_ID:2302417
PamMousecopper ion binding enablesISSUniProtKB:P149252290270 UniProtGO_REF:0000024
PamMousecopper ion binding enablesISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMouseidentical protein binding  ISOPam (Rattus norvegicus)9068941homooligomerizationRGDPMID:11395514 and REF_RGD_ID:2302422
PamMouseidentical protein binding enablesISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMouseL-ascorbic acid binding enablesIEAUniProtKB-KW:KW-08472290270 UniProtGO_REF:0000043
PamMousepeptidylamidoglycolate lyase activity enablesISOUniProtKB:P190212290270 GO_CentralGO_REF:0000119
PamMousepeptidylamidoglycolate lyase activity enablesISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMousepeptidylamidoglycolate lyase activity enablesISSUniProtKB:P149252290270 UniProtGO_REF:0000024
PamMousepeptidylamidoglycolate lyase activity  ISOPam (Rattus norvegicus)9068941 RGDPMID:16405966 and REF_RGD_ID:2302419
PamMousepeptidylglycine monooxygenase activity enablesISSUniProtKB:P149252290270 UniProtGO_REF:0000024
PamMousepeptidylglycine monooxygenase activity enablesISOUniProtKB:P190212290270 GO_CentralGO_REF:0000119
PamMousepeptidylglycine monooxygenase activity enablesTAS 2290270 PMID:10219055MGIPMID:10219055
PamMousepeptidylglycine monooxygenase activity enablesISOPam (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
PamMousepeptidylglycine monooxygenase activity enablesIBAPANTHER:PTN000073733 more ...2290270 GO_CentralGO_REF:0000033
PamMousepeptidylglycine monooxygenase activity  ISOPam (Rattus norvegicus)9068941 RGDPMID:16405966 and REF_RGD_ID:2302419
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RGD Manual Annotations


  
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Original Reference(s)
PamMousemelanocortin system pathway   ISOSpata20 (Rattus norvegicus)1357926 RGD 

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Reference Title
Reference Citation
1. Anti-inflammatory effects of 4-phenyl-3-butenoic acid and 5-(acetylamino)-4-oxo-6-phenyl-2-hexenoic acid methyl ester, potential inhibitors of neuropeptide bioactivation. Bauer JD, etal., J Pharmacol Exp Ther. 2007 Mar;320(3):1171-7. Epub 2006 Nov 30.
2. Hyperplasia of alveolar neuroendocrine cells in rat lung carcinogenesis by silica with selective expression of proadrenomedullin-derived peptides and amidating enzymes. Elizegi E, etal., Lab Invest. 2001 Dec;81(12):1627-38.
3. Effect of thyroid hormones on peptidylglycine alpha-amidating monooxygenase gene expression in anterior pituitary gland: transcriptional studies and messenger ribonucleic acid stability. Fraboulet S, etal., Endocrinology. 1996 Dec;137(12):5493-501.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. The multifunctional peptidylglycine alpha-amidating monooxygenase gene: exon/intron organization of catalytic, processing, and routing domains. Ouafik LH, etal., Mol Endocrinol 1992 Oct;6(10):1571-84.
9. Pro-opiomelanocortin processing in the hypothalamus: impact on melanocortin signalling and obesity. Pritchard LE, etal., J Endocrinol 2002 Mar;172(3):411-21.
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Expression of adrenomedullin and peptide amidation activity in human prostate cancer and in human prostate cancer cell lines. Rocchi P, etal., Cancer Res. 2001 Feb 1;61(3):1196-206.
14. Intermittent hypoxia activates peptidylglycine alpha-amidating monooxygenase in rat brain stem via reactive oxygen species-mediated proteolytic processing. Sharma SD, etal., J Appl Physiol. 2009 Jan;106(1):12-9. Epub 2008 Sep 25.
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PMID:7873888   PMID:8672144   PMID:8910496   PMID:8938438   PMID:10219055   PMID:10349636   PMID:11028916   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12748967  
PMID:15629125   PMID:15745951   PMID:16141072   PMID:16141073   PMID:16225857   PMID:16325307   PMID:16465591   PMID:17005911   PMID:18554416   PMID:19554387   PMID:19815072   PMID:19954489  
PMID:20573687   PMID:20648645   PMID:20943906   PMID:21267068   PMID:21677750   PMID:21873192   PMID:21873635   PMID:22194882   PMID:24032518   PMID:24200680   PMID:24593825   PMID:25391964  
PMID:26170456   PMID:26238476   PMID:26296884   PMID:27899360   PMID:28513435   PMID:29540787   PMID:30317586   PMID:30550785   PMID:30917312   PMID:31455734   PMID:31984442   PMID:32325033  
PMID:32554809   PMID:32581705   PMID:32661174   PMID:32694784   PMID:32902163   PMID:34321999   PMID:37168577   PMID:38355793  



Pam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,748,816 - 98,023,578 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,722,839 - 98,023,371 (-)EnsemblGRCm39 Ensembl
GRCm38197,821,091 - 98,095,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,795,114 - 98,095,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv37199,717,671 - 99,992,209 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36199,651,500 - 99,925,919 (-)NCBIMGSCv36mm8
Celera1100,701,674 - 100,975,784 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.76NCBI
PAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385102,754,783 - 103,031,105 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5102,753,981 - 103,029,730 (+)EnsemblGRCh38hg38GRCh38
GRCh375102,090,487 - 102,366,809 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365102,229,426 - 102,393,316 (+)NCBINCBI36Build 36hg18NCBI36
Build 345102,229,425 - 102,393,315NCBI
Celera598,149,342 - 98,314,632 (+)NCBICelera
Cytogenetic Map5q21.1NCBI
HuRef597,382,969 - 97,548,060 (+)NCBIHuRef
CHM1_15101,633,901 - 101,799,441 (+)NCBICHM1_1
T2T-CHM13v2.05103,262,795 - 103,539,139 (+)NCBIT2T-CHM13v2.0
Pam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89105,445,812 - 105,719,287 (+)NCBIGRCr8
mRatBN7.2997,998,581 - 98,271,966 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl998,122,916 - 98,271,965 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9106,535,688 - 106,685,815 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09111,663,678 - 111,813,798 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09110,007,065 - 110,157,189 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09111,028,543 - 111,177,588 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9111,028,575 - 111,177,602 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09110,584,141 - 110,737,487 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4996,893,071 - 97,047,523 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1997,102,550 - 97,257,003 (+)NCBI
Celera995,564,414 - 95,713,546 (+)NCBICelera
Cytogenetic Map9q36NCBI
Pam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541810,953,696 - 11,107,667 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541810,953,044 - 11,107,668 (-)NCBIChiLan1.0ChiLan1.0
PAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2498,032,957 - 98,314,224 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1596,297,289 - 96,467,871 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0598,104,058 - 98,385,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15103,803,846 - 104,085,774 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5103,913,456 - 104,085,774 (+)Ensemblpanpan1.1panPan2
PAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138,141,508 - 8,312,081 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38,142,061 - 8,290,477 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha39,543,047 - 9,693,485 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.038,029,782 - 8,180,284 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl38,029,980 - 8,180,292 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.137,970,219 - 8,120,392 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.037,988,856 - 8,139,107 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.038,148,827 - 8,299,174 (-)NCBIUU_Cfam_GSD_1.0
Pam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213163,307,429 - 163,485,516 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365231,493,450 - 1,750,524 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365231,492,795 - 1,786,942 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2108,255,930 - 108,536,880 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12108,255,923 - 108,536,192 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22112,397,471 - 112,553,945 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1236,316,428 - 6,482,959 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl236,316,428 - 6,486,751 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660367,849,169 - 8,133,685 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474320,988,916 - 21,178,933 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474320,834,664 - 21,178,933 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Pam
13727 total Variants

Predicted Target Of
Summary Value
Count of predictions:1455
Count of miRNA genes:611
Interacting mature miRNAs:748
Transcripts:ENSMUST00000058762, ENSMUST00000097625, ENSMUST00000159041, ENSMUST00000159131, ENSMUST00000159428, ENSMUST00000159585, ENSMUST00000159841, ENSMUST00000160210, ENSMUST00000161071, ENSMUST00000161567, ENSMUST00000162426, ENSMUST00000162681, ENSMUST00000162803, ENSMUST00000163007
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189786512123786512Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
10045976Tir6_mtrypanosome infection response 6 (mouse)Not determined193536855120529678Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
4141627Bwq7_mbody weight, QTL 7 (mouse)Not determined192940909124497796Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse

1 to 10 of 44 rows
U79523  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38197,821,655 - 97,821,743UniSTSGRCm38
MGSCv37199,718,232 - 99,718,320UniSTSGRCm37
Celera1100,702,235 - 100,702,323UniSTS
Cytogenetic Map1DUniSTS
cM Map157.5UniSTS
Whitehead/MRC_RH11340.64UniSTS
BB187771  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,045,834 - 98,045,943UniSTSGRCm38
MGSCv37199,942,411 - 99,942,520UniSTSGRCm37
Celera1100,925,905 - 100,926,014UniSTS
Cytogenetic Map1DUniSTS
cM Map157.5UniSTS
Whitehead/MRC_RH11335.54UniSTS
UniSTS:234182  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,054,122 - 98,054,210UniSTSGRCm38
MGSCv37199,950,699 - 99,950,787UniSTSGRCm37
Celera1100,934,194 - 100,934,282UniSTS
Cytogenetic Map1DUniSTS
cM Map157.5UniSTS
UniSTS:225022  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38197,900,096 - 97,900,268UniSTSGRCm38
MGSCv37199,796,673 - 99,796,845UniSTSGRCm37
Celera1100,780,773 - 100,780,945UniSTS
Cytogenetic Map1DUniSTS
cM Map157.5UniSTS
Pam  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1DUniSTS
cM Map157.5UniSTS
Pam  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1DUniSTS






1 to 30 of 38 rows
RefSeq Transcripts NM_001357127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 38 rows

Ensembl Acc Id: ENSMUST00000058762   ⟹   ENSMUSP00000057112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,748,819 - 98,023,346 (-)Ensembl
GRCm38.p6 Ensembl197,821,094 - 98,095,621 (-)Ensembl
Ensembl Acc Id: ENSMUST00000097625   ⟹   ENSMUSP00000095228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,748,820 - 98,023,357 (-)Ensembl
GRCm38.p6 Ensembl197,821,095 - 98,095,632 (-)Ensembl
Ensembl Acc Id: ENSMUST00000159041   ⟹   ENSMUSP00000124284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,722,839 - 97,768,536 (-)Ensembl
GRCm38.p6 Ensembl197,795,114 - 97,840,811 (-)Ensembl
Ensembl Acc Id: ENSMUST00000159131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,765,257 - 97,768,116 (-)Ensembl
GRCm38.p6 Ensembl197,837,532 - 97,840,391 (-)Ensembl
Ensembl Acc Id: ENSMUST00000159428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,861,196 - 97,904,793 (-)Ensembl
GRCm38.p6 Ensembl197,933,471 - 97,977,068 (-)Ensembl
Ensembl Acc Id: ENSMUST00000159585
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,749,706 - 97,762,372 (-)Ensembl
GRCm38.p6 Ensembl197,821,981 - 97,834,647 (-)Ensembl
Ensembl Acc Id: ENSMUST00000159841   ⟹   ENSMUSP00000124479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,782,359 - 97,822,121 (-)Ensembl
GRCm38.p6 Ensembl197,854,634 - 97,894,396 (-)Ensembl
Ensembl Acc Id: ENSMUST00000160210
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,750,449 - 97,753,710 (-)Ensembl
GRCm38.p6 Ensembl197,822,724 - 97,825,985 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,780,650 - 97,792,189 (-)Ensembl
GRCm38.p6 Ensembl197,852,925 - 97,864,464 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161567   ⟹   ENSMUSP00000125418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,748,825 - 97,904,980 (-)Ensembl
GRCm38.p6 Ensembl197,821,100 - 97,977,255 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,885,121 - 97,904,969 (-)Ensembl
GRCm38.p6 Ensembl197,957,396 - 97,977,244 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162681   ⟹   ENSMUSP00000125133
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,749,446 - 97,768,114 (-)Ensembl
GRCm38.p6 Ensembl197,821,721 - 97,840,389 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,753,384 - 97,768,606 (-)Ensembl
GRCm38.p6 Ensembl197,825,659 - 97,840,881 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,985,698 - 98,023,371 (-)Ensembl
GRCm38.p6 Ensembl198,057,973 - 98,095,646 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186731
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl197,981,715 - 97,985,608 (-)Ensembl
GRCm38.p6 Ensembl198,053,990 - 98,057,883 (-)Ensembl
RefSeq Acc Id: NM_001357127   ⟹   NP_001344056
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 98,023,246 (-)NCBI
GRCm38197,821,094 - 98,095,646 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001420985   ⟹   NP_001407914
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 98,023,246 (-)NCBI
RefSeq Acc Id: NM_001420986   ⟹   NP_001407915
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 98,023,246 (-)NCBI
RefSeq Acc Id: NM_001420987   ⟹   NP_001407916
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 97,904,943 (-)NCBI
RefSeq Acc Id: NM_001420988   ⟹   NP_001407917
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 98,023,246 (-)NCBI
RefSeq Acc Id: NM_001420989   ⟹   NP_001407918
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 98,023,246 (-)NCBI
RefSeq Acc Id: NM_001420990   ⟹   NP_001407919
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 98,023,246 (-)NCBI
RefSeq Acc Id: NM_001420991   ⟹   NP_001407920
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 98,023,246 (-)NCBI
RefSeq Acc Id: NM_001420992   ⟹   NP_001407921
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 97,904,943 (-)NCBI
RefSeq Acc Id: NM_013626   ⟹   NP_038654
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,819 - 98,023,246 (-)NCBI
GRCm38197,821,094 - 98,095,632 (-)NCBI
MGSCv37199,717,671 - 99,992,209 (-)RGD
Celera1100,701,674 - 100,975,784 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529243   ⟹   XP_006529306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,578 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247937   ⟹   XP_011246239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247938   ⟹   XP_011246240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247939   ⟹   XP_011246241
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319282   ⟹   XP_017174771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 97,905,497 (-)NCBI
GRCm38197,821,091 - 97,977,772 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319284   ⟹   XP_017174773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319286   ⟹   XP_017174775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,371 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252162   ⟹   XP_030108022
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,377 (-)NCBI
GRCm38197,821,091 - 98,095,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252165   ⟹   XP_030108025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,377 (-)NCBI
GRCm38197,821,091 - 98,095,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252167   ⟹   XP_030108027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 97,906,103 (-)NCBI
GRCm38197,821,091 - 97,978,378 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252177   ⟹   XP_030108037
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 97,905,502 (-)NCBI
GRCm38197,821,091 - 97,977,777 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252185   ⟹   XP_030108045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,578 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252186   ⟹   XP_030108046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,578 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252187   ⟹   XP_030108047
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,578 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252190   ⟹   XP_030108050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,578 (-)NCBI
GRCm38197,821,091 - 98,095,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162772   ⟹   XP_036018665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39197,748,816 - 98,023,393 (-)NCBI
Sequence:
1 to 30 of 36 rows
Protein RefSeqs NP_001344056 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407914 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407915 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407916 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407917 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407918 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407919 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407920 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407921 (Get FASTA)   NCBI Sequence Viewer  
  NP_038654 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529306 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246239 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246240 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246241 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174771 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174773 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174775 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108022 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108025 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108027 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108037 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108045 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108046 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108047 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108050 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018665 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB38364 (Get FASTA)   NCBI Sequence Viewer  
  AAI29870 (Get FASTA)   NCBI Sequence Viewer  
  BAC34705 (Get FASTA)   NCBI Sequence Viewer  
  BAE21243 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 36 rows
1 to 5 of 32 rows
1 to 5 of 32 rows
RefSeq Acc Id: NP_038654   ⟸   NM_013626
- Peptide Label: isoform 1 precursor
- UniProtKB: F8VQA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529306   ⟸   XM_006529243
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011246241   ⟸   XM_011247939
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011246240   ⟸   XM_011247938
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011246239   ⟸   XM_011247937
- Peptide Label: isoform X2
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-P97467-F1-model_v2 AlphaFold P97467 1-979 view protein structure

RGD ID:6874614
Promoter ID:EPDNEW_M758
Type:initiation region
Name:Pam_1
Description:Mus musculus peptidylglycine alpha-amidating monooxygenase ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M760  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38197,977,218 - 97,977,278EPDNEW
RGD ID:6874618
Promoter ID:EPDNEW_M760
Type:initiation region
Name:Pam_2
Description:Mus musculus peptidylglycine alpha-amidating monooxygenase ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M758  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38198,095,613 - 98,095,673EPDNEW
RGD ID:6818212
Promoter ID:MM_KWN:1754
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:UC007CFQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36199,791,346 - 99,791,846 (-)MPROMDB
RGD ID:6818211
Promoter ID:MM_KWN:1756
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Lung,   MEF_B6
Transcripts:UC007CFR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36199,873,516 - 99,874,016 (-)MPROMDB


1 to 40 of 45 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000026335 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000058762 ENTREZGENE
  ENSMUST00000058762.15 UniProtKB/Swiss-Prot
  ENSMUST00000097625 ENTREZGENE
  ENSMUST00000161567 ENTREZGENE
Gene3D-CATH 2.120.10.30 UniProtKB/Swiss-Prot
  2.60.120.230 UniProtKB/Swiss-Prot
  2.60.120.310 UniProtKB/Swiss-Prot
InterPro 6-blade_b-propeller_TolB-like UniProtKB/Swiss-Prot
  Cu2_ascorb_mOase-like_C UniProtKB/Swiss-Prot
  Cu2_ascorb_mOase_CS-1 UniProtKB/Swiss-Prot
  Cu2_ascorb_mOase_CS-2 UniProtKB/Swiss-Prot
  Cu2_ascorb_mOase_N UniProtKB/Swiss-Prot
  Cu2_ascorb_mOase_N_sf UniProtKB/Swiss-Prot
  Cu2_monoox_C UniProtKB/Swiss-Prot
  NHL_repeat UniProtKB/Swiss-Prot
  PHM/PAL UniProtKB/Swiss-Prot
  PHM/PNGase_F_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:18484 UniProtKB/Swiss-Prot
MGD MGI:97475 ENTREZGENE
NCBI Gene 18484 ENTREZGENE
PANTHER PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE UniProtKB/Swiss-Prot
  PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE UniProtKB/Swiss-Prot
Pfam Cu2_monoox_C UniProtKB/Swiss-Prot
  Cu2_monooxygen UniProtKB/Swiss-Prot
  NHL UniProtKB/Swiss-Prot
PhenoGen Pam PhenoGen
PRINTS PAMONOXGNASE UniProtKB/Swiss-Prot
PROSITE CU2_MONOOXYGENASE_1 UniProtKB/Swiss-Prot
  CU2_MONOOXYGENASE_2 UniProtKB/Swiss-Prot
  NHL UniProtKB/Swiss-Prot
Superfamily-SCOP Calcium-dependent phosphotriesterase UniProtKB/Swiss-Prot
  SSF49742 UniProtKB/Swiss-Prot
UniProt A1L331_MOUSE UniProtKB/TrEMBL
  AMD_MOUSE UniProtKB/Swiss-Prot
  E9Q704 ENTREZGENE, UniProtKB/TrEMBL
  E9QL07 ENTREZGENE
  F6T0D3_MOUSE UniProtKB/TrEMBL
  F6TGI4_MOUSE UniProtKB/TrEMBL
  F7D4K4_MOUSE UniProtKB/TrEMBL
1 to 40 of 45 rows