PAM (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 3 | 8,141,508 - 8,312,081 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 3 | 8,142,061 - 8,290,477 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 3 | 9,543,047 - 9,693,485 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 3 | 8,029,782 - 8,180,284 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 3 | 8,029,980 - 8,180,292 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 3 | 7,970,219 - 8,120,392 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 3 | 7,988,856 - 8,139,107 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 3 | 8,148,827 - 8,299,174 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
PAM (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 5 | 102,754,783 - 103,031,105 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 5 | 102,753,981 - 103,029,730 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 5 | 102,090,487 - 102,366,809 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 5 | 102,229,426 - 102,393,316 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 5 | 102,229,425 - 102,393,315 | NCBI | | | | | Celera | 5 | 98,149,342 - 98,314,632 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | q21.1 | NCBI | | | | | HuRef | 5 | 97,382,969 - 97,548,060 (+) | NCBI | | HuRef | | | CHM1_1 | 5 | 101,633,901 - 101,799,441 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 5 | 103,262,795 - 103,539,139 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Pam (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 1 | 97,748,816 - 98,023,578 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 97,722,839 - 98,023,371 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 97,821,091 - 98,095,853 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 97,795,114 - 98,095,646 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 99,717,671 - 99,992,209 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 99,651,500 - 99,925,919 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 100,701,674 - 100,975,784 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | D | NCBI | | | | | cM Map | 1 | 47.76 | NCBI | | | | |
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Pam (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 9 | 105,445,812 - 105,719,287 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 9 | 97,998,581 - 98,271,966 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 9 | 98,122,916 - 98,271,965 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 9 | 106,535,688 - 106,685,815 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 9 | 111,663,678 - 111,813,798 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 9 | 110,007,065 - 110,157,189 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 9 | 111,028,543 - 111,177,588 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 9 | 111,028,575 - 111,177,602 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 9 | 110,584,141 - 110,737,487 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 9 | 96,893,071 - 97,047,523 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 9 | 97,102,550 - 97,257,003 (+) | NCBI | | | | | Celera | 9 | 95,564,414 - 95,713,546 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | q36 | NCBI | | | | |
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Pam (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955418 | 10,953,696 - 11,107,667 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955418 | 10,953,044 - 11,107,668 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
PAM (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 4 | 98,032,957 - 98,314,224 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 5 | 96,297,289 - 96,467,871 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 5 | 98,104,058 - 98,385,157 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 5 | 103,803,846 - 104,085,774 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 5 | 103,913,456 - 104,085,774 (+) | Ensembl | panpan1.1 | | panPan2 | |
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Pam (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024407213 | 163,307,429 - 163,485,516 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936523 | 1,493,450 - 1,750,524 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936523 | 1,492,795 - 1,786,942 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
PAM (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 2 | 108,255,930 - 108,536,880 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 2 | 108,255,923 - 108,536,192 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 2 | 112,397,471 - 112,553,945 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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PAM (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 23 | 6,316,428 - 6,482,959 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 23 | 6,316,428 - 6,486,751 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666036 | 7,849,169 - 8,133,685 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Pam (Heterocephalus glaber - naked mole-rat) |
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